Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008362

Physical Location & Seq

Genomic Coordinates Reverse (-)

13742308 .. 13744301

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTCTGTTCAAATGTTGAAGTGCTCCCTCTCTCCAATCCCGGTTTCCCAGTCGAATTTTCCCGGAAAATCCAGCTGGGTTTTCCCGGAATTTCAGTCCAGGAAAAGTTTAATCAGGTTGTCAGGATACAGAGGGTACGGATATCACTTGAGAAATAGGAGGCGGTTTGGGGTCTGCTGCAAAGCTCAAGAATCTGACAGCAAAAGCAATGGTGAAGAACCTCCGGAGTCGTTGTTTATGAAGGAATTAAGGAGGAGGGGTATGAATCCCACTTCTTTGCTTGAGGGAAAAGAGAGGACTGAGTATGGAATGAATGACGAGATGAGAAACGAAGATAGAGGTTTCTCGGCTAGAAATGCTGTCTCAACCGAAATTGAGAAAAGCCTAGCAAATCAAAGGGAGCGGTCCATGCTGTTGAACAGCGAAGGCCTTGAGGGGTTAATCCCTCGGGCCAGACTCTTGCTGACAATCGGAGGGACATTCTTCTTGGGGTTTTGGCCATTGATCCTCATAACTGTAGCACTCTTCTCTGCTCTCTACTTGTACTTTGGATCGACTTTTGTCCATGACGGAAGCAGTTTGCCGATGTCACCACCCCAATACATTGATCCGTATGAACTTCTGGAAGACGAAAGGATTTCTCAAATAGCACCACGTGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.25

Weight (kDa)

8.99

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50020
fragaria_vesca	FvH4_2g03130 FvH4_2g03130 FvH4_2g03130 FvH4_2g03130
malus_domestica	MD05G1106900.v1.1 MD10G1111900.v1.1
prunus_persica	Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1 Prupe.8G151000_v2.0.a1
pyrus_communis	pycom05g10380 pycom10g09670
rosa_chinensis	RchiOBHm_Chr6g0248001
rosa_laevigata	RLG00000015164
rosa_multiflora	Rmu_sc0010633.1_g000009 Rmu_sc0025757.1_g000004
rosa_roxburghii	Rroxscaffold_7G00213510
rosa_rugosa	Rorug05G0530100
rosa_samantha	Rh6AG045000 Rh6BG040100 Rh6CG038500 Rh6DG035500
rosa_wichuraiana	Rw6G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	406
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	166, 406
AclWI	GGATC	3 cut(s)	502, 562, 605
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	2 cut(s)	58, 92
AcvI	CACGTG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	140, 548
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	14, 22, 421
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	2 cut(s)	78, 188
AluI	AGCT	2 cut(s)	78, 188
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	3 cut(s)	502, 562, 605
Ama87I	CYCGRG	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	3 cut(s)	430, 453, 500
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	2 cut(s)	58, 92
AspS9I	GGNCC	2 cut(s)	408, 453
AsuC2I	CCSGG	3 cut(s)	44, 66, 89
AsuHPI	GGTGA	2 cut(s)	227, 585
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	502
BbrPI	CACGTG	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	122
BcnI	CCSGG	3 cut(s)	44, 66, 89
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	354, 389
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	4 cut(s)	44, 66, 89, 103
Bme18I	GGWCC	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	408, 453
BmrFI	CCNGG	4 cut(s)	44, 66, 89, 103
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	636
BpuEI	CTTGAG	4 cut(s)	172, 174, 305, 455
BpuMI	CCSGG	3 cut(s)	44, 66, 89
BsaAI	YACGTR	1 cut(s)	659
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 247, 251, 277
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	217
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	432, 455, 502
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	4 cut(s)	44, 66, 89, 227
BslFI	GGGAC	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	432, 455, 502
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	507, 554, 610
BspACI	CCGC	2 cut(s)	166, 406
BspANI	GGCC	3 cut(s)	432, 455, 502
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	226
BspPI	GGATC	3 cut(s)	502, 562, 605
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	3 cut(s)	507, 554, 610
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	659
BstDEI	CTNAG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	510, 557, 613
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	507, 554, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 412
BstNI	CCWGG	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	4 cut(s)	42, 64, 87, 101
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	636
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	432, 455, 502
Cfr13I	GGNCC	2 cut(s)	408, 453
Csp6I	GTAC	2 cut(s)	139, 547
CviAII	CATG	2 cut(s)	412, 569
CviJI	RGCY	7 cut(s)	78, 188, 353, 387, 432, 455, 502
CviKI_1	RGCY	7 cut(s)	78, 188, 353, 387, 432, 455, 502
CviQI	GTAC	2 cut(s)	139, 547
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	3 cut(s)	509, 556, 612
DpnII	GATC	3 cut(s)	507, 554, 610
DraIII	CACNNNGTG	1 cut(s)	659
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco147I	AGGCCT	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	408
Eco72I	CACGTG	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	146
FaeI	CATG	2 cut(s)	415, 572
FaiI	YATR	7 cut(s)	242, 266, 309, 413, 515, 570, 618
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	2 cut(s)	411, 568
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	354, 389
GluI	GCNGC	1 cut(s)	181
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	432, 455, 502
HapII	CCGG	4 cut(s)	44, 66, 89, 227
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	415, 572
HinfI	GANTC	4 cut(s)	194, 230, 268, 459
HpaII	CCGG	4 cut(s)	44, 66, 89, 227
HphI	GGTGA	2 cut(s)	227, 585
Hpy188I	TCNGA	2 cut(s)	199, 476
Hpy188III	TCNNGA	4 cut(s)	126, 191, 227, 626
HpyAV	CCTTC	2 cut(s)	238, 422
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 412
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	658
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	415, 572
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	507, 554, 610
LmnI	GCTCC	2 cut(s)	32, 403
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	354, 389
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	3 cut(s)	509, 556, 612
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	3 cut(s)	507, 554, 610
MboII	GAAGA	5 cut(s)	230, 347, 478, 520, 641
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	4 cut(s)	58, 92, 248, 375
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	239, 453
Mox20I	TGGCCA	1 cut(s)	502
MroI	TCCGGA	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	3 cut(s)	113, 251, 443
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	4 cut(s)	44, 66, 89, 227
MspR9I	CCNGG	4 cut(s)	44, 66, 89, 103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	359, 412
NciI	CCSGG	3 cut(s)	44, 66, 89
NdeII	GATC	3 cut(s)	507, 554, 610
NlaIII	CATG	2 cut(s)	415, 572
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	194, 268
PfoI	TCCNGGA	3 cut(s)	64, 87, 101
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	238, 453
PmaCI	CACGTG	1 cut(s)	659
PmlI	CACGTG	1 cut(s)	659
PpsI	GAGTC	2 cut(s)	238, 453
Ppu21I	YACGTR	1 cut(s)	659
PshAI	GACNNNNGTC	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	101
PspCI	CACGTG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	408, 453
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	2 cut(s)	140, 548
RsaNI	GTAC	2 cut(s)	139, 547
SaqAI	TTAA	3 cut(s)	113, 251, 443
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	507, 554, 610
Sau96I	GGNCC	2 cut(s)	408, 453
SchI	GAGTC	2 cut(s)	239, 453
ScrFI	CCNGG	4 cut(s)	44, 66, 89, 103
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	6 cut(s)	80, 122, 190, 226, 346, 661
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	408
SmlI	CTYRAG	4 cut(s)	151, 189, 284, 434
SmoI	CTYRAG	4 cut(s)	151, 189, 284, 434
Sse9I	AATT	4 cut(s)	58, 92, 248, 375
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	2 cut(s)	166, 406
SspMI	CTAG	2 cut(s)	354, 389
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	4 cut(s)	42, 64, 87, 101
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	2 cut(s)	56, 557
TasI	AATT	4 cut(s)	58, 92, 248, 375
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	194, 268
Tru1I	TTAA	3 cut(s)	113, 251, 443
Tru9I	TTAA	3 cut(s)	113, 251, 443
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	4 cut(s)	257, 281, 329, 633
TspGWI	ACGGA	3 cut(s)	156, 588, 603
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	2 cut(s)	58, 92
XspI	CTAG	2 cut(s)	354, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.