FvH4_2g03130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008362
Physical Location & Seq
Forward (+)
2425654 .. 2428132
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03130.t3

Sequence Viewer

Length: 636 bp
ATGGCTTCTCTTCAAATCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCTCAGTCATGTTTCACCGGAAAATCCAGGTGGGTCTTGTCGGAAATCAAGTTCTCCGGTTGTTATTACATGAGGAGGAGGAGGTTCAGGGTCTGCTGCAAAGCTCAGGAGGCTGACAACAAAAGCAATGGGGAGGAGCCACCAGAGTCATTGTTTATGAAGGAACTGAGGAGGAGGGGTATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACTGAGCATGGAATCAATGATGAGAGGGGCAAAGAAGATAGAGGTTTCTCATCTAGAAATGCTGTGTCAACTGAAGTGGAGAAAAGTCTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTCGAGGGGTTGATCCCTCGAGGAAGACTCTTGCTGACGCTTGGAGGGACATTCTTCCTCGCATTTTGGCCATTTATCGTCATAAGTGTAGCACTATTCGCTGCTCTCTACTTGTACTTTGGACCAACATTTATCCACGATGCAAACAACAGACTACCAATATCACCACCTCAATACATTGATCCGTATGAACTTCTGGAAGATGACAGGATTTCTCAAATAGCGCCTCGTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.08

Weight (kDa)

8.69

Isoelectric Point (pI)

65.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 2 cut(s) 398, 414
AclWI GGATC 3 cut(s) 366, 403, 572
AcoI YGGCCR 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 512
AgsI TTSAA 3 cut(s) 14, 22, 385
AjnI CCWGG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwI GGATC 3 cut(s) 366, 403, 572
AlwNI CAGNNNCTG 1 cut(s) 141
Ama87I CYCGRG 2 cut(s) 398, 414
AoxI GGCC 2 cut(s) 394, 464
ApeKI GCWGC 2 cut(s) 144, 497
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 55, 552
AvaI CYCGRG 2 cut(s) 398, 414
AvaII GGWCC 1 cut(s) 518
BalI TGGCCA 1 cut(s) 466
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 131, 484
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 623
BisI GCNGC 2 cut(s) 145, 498
BlsI GCNGC 2 cut(s) 146, 499
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 2 cut(s) 398, 414
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 408, 440
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 269
BsaWI WCCGGW 2 cut(s) 65, 104
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 211, 241
Bse3DI GCAATG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 4 cut(s) 65, 167, 206, 258
BseRI GAGGAG 6 cut(s) 136, 139, 142, 197, 232, 235
BseXI GCAGC 2 cut(s) 131, 484
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 2 cut(s) 396, 466
BsiHKCI CYCGRG 2 cut(s) 398, 414
BsiSI CCGG 2 cut(s) 66, 105
BslFI GGGAC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 2 cut(s) 396, 466
BsoBI CYCGRG 2 cut(s) 398, 414
Bsp143I GATC 3 cut(s) 371, 408, 577
BspANI GGCC 2 cut(s) 396, 466
BspCNI CTCAG 4 cut(s) 64, 166, 207, 259
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 3 cut(s) 366, 403, 572
BsrDI GCAATG 1 cut(s) 181
BssMI GATC 3 cut(s) 371, 408, 577
BssSI CACGAG 1 cut(s) 624
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 4 cut(s) 51, 153, 215, 267
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 3 cut(s) 374, 411, 580
BstMBI GATC 3 cut(s) 371, 408, 577
BstMWI GCNNNNNNNGC 3 cut(s) 158, 376, 494
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 131, 484
BstV2I GAAGAC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 396, 466
BtsIMutI CAGTG 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 511
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 4 cut(s) 57, 118, 272, 376
CviJI RGCY 8 cut(s) 5, 42, 152, 161, 187, 356, 396, 466
CviKI_1 RGCY 8 cut(s) 5, 42, 152, 161, 187, 356, 396, 466
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 4 cut(s) 51, 153, 215, 267
DpnI GATC 3 cut(s) 373, 410, 579
DpnII GATC 3 cut(s) 371, 408, 577
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco147I AGGCCT 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 2 cut(s) 398, 414
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 4 cut(s) 60, 121, 275, 379
FaiI YATR 8 cut(s) 58, 119, 206, 230, 273, 377, 479, 585
FaqI GGGAC 1 cut(s) 457
FatI CATG 4 cut(s) 56, 117, 271, 375
Fnu4HI GCNGC 2 cut(s) 145, 498
Fsp4HI GCNGC 2 cut(s) 145, 498
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 621
GluI GCNGC 2 cut(s) 145, 498
GsaI CCCAGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 623
HaeIII GGCC 2 cut(s) 396, 466
HapII CCGG 2 cut(s) 66, 105
HgaI GACGC 1 cut(s) 442
HhaI GCGC 1 cut(s) 622
Hin1II CATG 4 cut(s) 60, 121, 275, 379
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 4 cut(s) 194, 232, 276, 423
HpaII CCGG 2 cut(s) 66, 105
HphI GGTGA 2 cut(s) 55, 552
Hpy166II GTNNAC 2 cut(s) 27, 333
Hpy188I TCNGA 2 cut(s) 91, 237
Hpy188III TCNNGA 3 cut(s) 155, 318, 593
Hpy8I GTNNAC 2 cut(s) 27, 333
HpyAV CCTTC 2 cut(s) 202, 386
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 3 cut(s) 147, 379, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 376, 494
HpyF3I CTNAG 4 cut(s) 51, 153, 215, 267
Hsp92II CATG 4 cut(s) 60, 121, 275, 379
HspAI GCGC 1 cut(s) 620
Kzo9I GATC 3 cut(s) 371, 408, 577
LmnI GCTCC 2 cut(s) 184, 367
Lsp1109I GCAGC 2 cut(s) 131, 484
LweI GCATC 1 cut(s) 526
MaeI CTAG 1 cut(s) 318
MalI GATC 3 cut(s) 373, 410, 579
MboI GATC 3 cut(s) 371, 408, 577
MboII GAAGA 5 cut(s) 10, 311, 432, 442, 608
MlsI TGGCCA 1 cut(s) 466
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 3 cut(s) 203, 241, 417
MmeI TCCRAC 2 cut(s) 69, 260
Mox20I TGGCCA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 466
Msp20I TGGCCA 1 cut(s) 466
MspI CCGG 2 cut(s) 66, 105
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 158, 376, 494
NdeII GATC 3 cut(s) 371, 408, 577
NlaIII CATG 4 cut(s) 60, 121, 275, 379
NlaIV GGNNCC 1 cut(s) 186
PaeR7I CTCGAG 2 cut(s) 398, 414
PceI AGGCCT 1 cut(s) 396
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 2 cut(s) 146, 499
PleI GAGTC 3 cut(s) 202, 240, 417
PpsI GAGTC 3 cut(s) 202, 240, 417
Psp6I CCWGG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 518
PspXI VCTCGAGB 2 cut(s) 398, 414
PstNI CAGNNNCTG 1 cut(s) 141
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SatI GCNGC 2 cut(s) 145, 498
Sau3AI GATC 3 cut(s) 371, 408, 577
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 3 cut(s) 203, 241, 417
ScrFI CCNGG 1 cut(s) 76
SetI ASST 5 cut(s) 80, 134, 154, 310, 568
SfaNI GCATC 1 cut(s) 526
Sfr274I CTCGAG 2 cut(s) 398, 414
SinI GGWCC 1 cut(s) 518
SlaI CTCGAG 2 cut(s) 398, 414
SmlI CTYRAG 3 cut(s) 248, 398, 414
SmoI CTYRAG 3 cut(s) 248, 398, 414
SseBI AGGCCT 1 cut(s) 396
SspMI CTAG 1 cut(s) 318
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 2 cut(s) 399, 415
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 1 cut(s) 276
TscAI CASTG 1 cut(s) 394
TseI GCWGC 2 cut(s) 144, 497
TspDTI ATGAA 2 cut(s) 221, 600
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 317
XhoI CTCGAG 2 cut(s) 398, 414
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.