RchiOBHm_Chr6g0248001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008362
Physical Location & Seq
Forward (+)
4044701 .. 4047368
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22233

Sequence Viewer

Length: 741 bp
ATGGCTTCTCTTCAAATCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCCCAGTCAAGTTTCACCGGAAAATCCAGGTGGGTCTTGTCGGAAATTCAGTCCAGGAATAACAGTATCATCAGGCTCTCTGGTTATTATTACTTGAGGAGGAGGAGGTTCAGGGTCTGCTGCAAAGCTCAAGAATCAGATAACAAAAGCAATGGCAAGCTCTTCAATTTCGCTATTTGGTTTCGTTTCTGGGTTGTTTTTTATTTTGATGGTGTTTCAGTTAAAGACTCTTTCTTTATGAGGGAAGAACCGCCCGAGTCATTGTTTATGAAGGAATTGAGGAGGAGGGGTATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACCGAGCGTGGAATCAATGATGAGAGGGGCAAAGGAGATAGAGGTTTCTCAAATAGAAATGCGGTCTCAACTGAAGTGGAGAAAAGCCTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTCGAGGGGTTGATCCCTCGAGGAAGACTCTTGCTGACGCTTGGAGGGACATTCTTCTTGGCATTTTGGCCATTTATGGTCATAAGTGTAGCACTATTCTCTGCTCTCTATTTCTACTTTGGACCAACATTTATCCATGATGCAAACAACAGAATATCACCACCTCAATACATTGATCCGTATGAACTTCTGGAAGATGATAGGATTTCTCAAATAGCCCCTCGTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

28.54

Weight (kDa)

9.62

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 2 cut(s) 509, 525
AciI CCGC 2 cut(s) 299, 437
AclWI GGATC 3 cut(s) 477, 514, 677
AcoI YGGCCR 1 cut(s) 575
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 468
AgsI TTSAA 4 cut(s) 14, 22, 214, 496
AjnI CCWGG 3 cut(s) 74, 101, 462
AluBI AGCT 2 cut(s) 176, 208
AluI AGCT 2 cut(s) 176, 208
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 3 cut(s) 477, 514, 677
AlwNI CAGNNNCTG 1 cut(s) 165
Ama87I CYCGRG 3 cut(s) 302, 509, 525
AoxI GGCC 2 cut(s) 505, 575
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 375, 629
AsuHPI GGTGA 2 cut(s) 55, 657
AvaI CYCGRG 3 cut(s) 302, 509, 525
AvaII GGWCC 2 cut(s) 375, 629
BalI TGGCCA 1 cut(s) 577
BauI CACGAG 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 3 cut(s) 76, 103, 464
BcoDI GTCTC 1 cut(s) 445
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 3 cut(s) 76, 103, 464
Bme18I GGWCC 2 cut(s) 375, 629
BmeT110I CYCGRG 3 cut(s) 302, 509, 525
BmgT120I GGNCC 2 cut(s) 375, 629
BmrFI CCNGG 3 cut(s) 76, 103, 464
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 538
BplI GAGNNNNNCTC 2 cut(s) 519, 551
BpuEI CTTGAG 3 cut(s) 162, 163, 380
BsaI GGTCTC 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 322, 352
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 3 cut(s) 76, 103, 464
BseMI GCAATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 5 cut(s) 160, 163, 166, 343, 346
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 2 cut(s) 507, 577
BsiHKCI CYCGRG 3 cut(s) 302, 509, 525
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 568
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 2 cut(s) 507, 577
Bso31I GGTCTC 1 cut(s) 445
BsoBI CYCGRG 3 cut(s) 302, 509, 525
Bsp143I GATC 3 cut(s) 482, 519, 682
BspACI CCGC 2 cut(s) 299, 437
BspANI GGCC 2 cut(s) 507, 577
BspPI GGATC 3 cut(s) 477, 514, 677
BspQI GCTCTTC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 52
BssMI GATC 3 cut(s) 482, 519, 682
BssSI CACGAG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 3 cut(s) 76, 103, 464
Bst4CI ACNGT 2 cut(s) 113, 500
Bst6I CTCTTC 2 cut(s) 15, 215
BstC8I GCNNGC 1 cut(s) 206
BstKTI GATC 3 cut(s) 485, 522, 685
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 3 cut(s) 482, 519, 682
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 3 cut(s) 76, 103, 464
BstSCI CCNGG 3 cut(s) 74, 101, 462
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 538
BsuRI GGCC 2 cut(s) 507, 577
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 375, 629
CseI GACGC 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 2 cut(s) 487, 644
DpnI GATC 3 cut(s) 484, 521, 684
DpnII GATC 3 cut(s) 482, 519, 682
EaeI YGGCCR 1 cut(s) 575
Eam1104I CTCTTC 2 cut(s) 15, 215
EarI CTCTTC 2 cut(s) 15, 215
Eco147I AGGCCT 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 375, 629
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 3 cut(s) 302, 509, 525
EcoRII CCWGG 3 cut(s) 74, 101, 462
FaeI CATG 2 cut(s) 490, 647
FaiI YATR 8 cut(s) 287, 317, 341, 488, 584, 590, 645, 690
FaqI GGGAC 1 cut(s) 568
FatI CATG 2 cut(s) 486, 643
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 2 cut(s) 507, 577
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 553
Hin1II CATG 2 cut(s) 490, 647
HinfI GANTC 6 cut(s) 182, 275, 305, 343, 387, 534
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 55, 657
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 91, 187, 348
Hpy188III TCNNGA 2 cut(s) 179, 698
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 313, 497
HpyCH4III ACNGT 2 cut(s) 113, 500
HpyCH4V TGCA 3 cut(s) 171, 490, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
Hsp92II CATG 2 cut(s) 490, 647
Kzo9I GATC 3 cut(s) 482, 519, 682
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 637
MalI GATC 3 cut(s) 484, 521, 684
MboI GATC 3 cut(s) 482, 519, 682
MboII GAAGA 6 cut(s) 10, 202, 305, 543, 553, 713
MlsI TGGCCA 1 cut(s) 577
MluCI AATT 3 cut(s) 93, 214, 323
MluNI TGGCCA 1 cut(s) 577
MlyI GAGTC 4 cut(s) 269, 314, 352, 528
MmeI TCCRAC 2 cut(s) 69, 371
Mox20I TGGCCA 1 cut(s) 577
MscI TGGCCA 1 cut(s) 577
MseI TTAA 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 577
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 3 cut(s) 76, 103, 464
MvaI CCWGG 3 cut(s) 76, 103, 464
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeII GATC 3 cut(s) 482, 519, 682
NlaIII CATG 2 cut(s) 490, 647
PaeR7I CTCGAG 2 cut(s) 509, 525
PceI AGGCCT 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 182, 387
PfoI TCCNGGA 1 cut(s) 101
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 4 cut(s) 269, 313, 351, 528
PpsI GAGTC 4 cut(s) 269, 313, 351, 528
Psp6I CCWGG 3 cut(s) 74, 101, 462
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 3 cut(s) 74, 101, 462
PspPI GGNCC 2 cut(s) 375, 629
PspXI VCTCGAGB 2 cut(s) 509, 525
PstNI CAGNNNCTG 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 3 cut(s) 482, 519, 682
Sau96I GGNCC 2 cut(s) 375, 629
SchI GAGTC 4 cut(s) 269, 314, 352, 528
ScrFI CCNGG 3 cut(s) 76, 103, 464
SetI ASST 6 cut(s) 80, 158, 178, 210, 421, 673
SfaNI GCATC 1 cut(s) 637
Sfr274I CTCGAG 2 cut(s) 509, 525
SinI GGWCC 2 cut(s) 375, 629
SlaI CTCGAG 2 cut(s) 509, 525
SmlI CTYRAG 5 cut(s) 142, 177, 359, 509, 525
SmoI CTYRAG 5 cut(s) 142, 177, 359, 509, 525
Sse9I AATT 3 cut(s) 93, 214, 323
SseBI AGGCCT 1 cut(s) 507
SsiI CCGC 2 cut(s) 299, 437
StuI AGGCCT 1 cut(s) 507
StyD4I CCNGG 3 cut(s) 74, 101, 462
TaaI ACNGT 2 cut(s) 113, 500
TaqI TCGA 2 cut(s) 510, 526
TaqII GACCGA 1 cut(s) 392
TasI AATT 3 cut(s) 93, 214, 323
TfiI GAWTC 2 cut(s) 182, 387
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 505
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 332, 705
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 375, 629
XapI RAATTY 1 cut(s) 93
XhoI CTCGAG 2 cut(s) 509, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.