Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

18989751 .. 18992149

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCTAATCCAGCTTGTTCGAATCTCTTCAACAATGGATGTGACCATAATAGCTTCAACTATTCCACTTCTCTCTCTTACATTTACAACTCTCACGGTAGCTACTATTACTCTAATACCACAAACCCTAATTACATTAATCATACTCATACCACTTCCACTTCCCCTAACTCACCCCCACTAAGAGAAGCTCTTCCTCTTCTTAGCTTAAGCCCCATAAGGCACCAAGAACAACAAGACCAACACTATTTCATGGACACCCATCAAATTAGCTCTTCAAACTTTCTTGATGATCCTCTTGTGACTGTGGATCTTCATCTAGGGTTACCAAACTACGGTGTTGGTGAGAGCATTAGGAGCAATATTGCTCCTGATGCAACCACGGACGAGCAAGATCAAGATCATGACCGAGGAGTAGAAGTCACAGTTGAGTCCCACCTTGATGATGATGATGATCATCATGGAGATCTACACAGAGGTCATCACTATTGGATTCCTACTCCTTCTCAGATTTTGATTGGTCCTACACAGTTCACTTGTCCTCTTTGCTTCAAGACATTCAACAGATACAACAACATGCAGATGCACATGTGGGGACACGGCTCACAATACAGAAAGGGACCAGAATCCTTAAGAGGAACCCAACCAACAGGAATGCTAAGACTACCATGTTTCTGCTGTGCACCCGGTTGCAAGAACAACATTGACCACCCACGAGCCAAGCCTCTTAAGGACTTTCGAACCCTCCAAACACATTACAAACGTAAACATGGGTCTAAACCATTTGCTTGTCGTATGTGTGGTAAGGCCTTTGCAGTGAAAGGAGATTGGAGAACGCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCTCTTGTGGCTCGGATTTTAAGCACAAGAGGTCGCTTAAGGACCATGTCAAGGCCTTTGGAAATGGTCATGTTCCTTGTGGGATTGATAGTTTTGGAGGAGATCATGAGGACTACTATGATGCTGCTTCTGATATCGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

337

Amino Acids

38.24

Weight (kDa)

6.47

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	224 - 258	1.3e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	261 - 285	6.2e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AclWI	GGATC	2 cut(s)	287, 318
AfiI	CCNNNNNNNGG	2 cut(s)	335, 919
AflII	CTTAAG	4 cut(s)	208, 631, 728, 905
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	5 cut(s)	31, 58, 279, 553, 562
AluBI	AGCT	7 cut(s)	14, 54, 102, 191, 207, 273, 859
AluI	AGCT	7 cut(s)	14, 54, 102, 191, 207, 273, 859
Alw21I	GWGCWC	1 cut(s)	685
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	2 cut(s)	287, 318
AoxI	GGCC	2 cut(s)	807, 921
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	1 cut(s)	992
AseI	ATTAAT	1 cut(s)	138
Asp700I	GAANNNNTTC	2 cut(s)	26, 192
AspS9I	GGNCC	3 cut(s)	521, 620, 910
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	2 cut(s)	165, 356
AsuII	TTCGAA	2 cut(s)	20, 739
AvaII	GGWCC	3 cut(s)	521, 620, 910
BaeGI	GKGCMC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	1 cut(s)	979
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	616
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	320
BfrI	CTTAAG	4 cut(s)	208, 631, 728, 905
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	1 cut(s)	993
BlsI	GCNGC	1 cut(s)	994
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	3 cut(s)	521, 620, 910
BmgT120I	GGNCC	3 cut(s)	521, 620, 910
BmiI	GGNNCC	3 cut(s)	224, 621, 640
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	3 cut(s)	364, 573, 979
Bpu14I	TTCGAA	2 cut(s)	20, 739
BpuMI	CCSGG	1 cut(s)	687
BsaBI	GATNNNNATC	4 cut(s)	315, 399, 453, 456
BsaJI	CCNNGG	2 cut(s)	381, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 919
Bse8I	GATNNNNATC	4 cut(s)	315, 399, 453, 456
BseDI	CCNNGG	2 cut(s)	381, 409
BseGI	GGATG	1 cut(s)	44
BseJI	GATNNNNATC	4 cut(s)	315, 399, 453, 456
BseLI	CCNNNNNNNGG	2 cut(s)	335, 919
BseMII	CTCAG	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	426, 981
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	1 cut(s)	979
BshFI	GGCC	2 cut(s)	809, 923
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	3 cut(s)	418, 609, 633
BslI	CCNNNNNNNGG	2 cut(s)	335, 919
BsmFI	GGGAC	3 cut(s)	418, 609, 633
BsmI	GAATGC	1 cut(s)	660
BsnI	GGCC	2 cut(s)	809, 923
Bsp119I	TTCGAA	2 cut(s)	20, 739
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
BspANI	GGCC	2 cut(s)	809, 923
BspCNI	CTCAG	1 cut(s)	520
BspHI	TCATGA	2 cut(s)	403, 973
BspLI	GGNNCC	3 cut(s)	224, 621, 640
BspPI	GGATC	2 cut(s)	287, 318
BspQI	GCTCTTC	2 cut(s)	198, 280
BspT104I	TTCGAA	2 cut(s)	20, 739
BspT107I	GGYRCC	1 cut(s)	222
BspTI	CTTAAG	4 cut(s)	208, 631, 728, 905
BssECI	CCNNGG	2 cut(s)	381, 409
BssMI	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
BssSI	CACGAG	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	714
Bst4CI	ACNGT	5 cut(s)	98, 307, 338, 427, 531
Bst6I	CTCTTC	4 cut(s)	32, 198, 204, 280
BstAFI	CTTAAG	4 cut(s)	208, 631, 728, 905
BstBI	TTCGAA	2 cut(s)	20, 739
BstDEI	CTNAG	4 cut(s)	182, 203, 507, 659
BstDSI	CCRYGG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	7 cut(s)	295, 313, 397, 403, 457, 469, 973
BstMBI	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 374, 876
BstNSI	RCATGY	2 cut(s)	580, 592
BstPI	GGTNACC	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	685
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	1 cut(s)	979
BstX2I	RGATCY	2 cut(s)	310, 466
BstYI	RGATCY	2 cut(s)	310, 466
BsuRI	GGCC	2 cut(s)	809, 923
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	822
CciI	TCATGA	2 cut(s)	403, 973
Cfr13I	GGNCC	3 cut(s)	521, 620, 910
DdeI	CTNAG	4 cut(s)	182, 203, 507, 659
DpnI	GATC	7 cut(s)	294, 312, 396, 402, 456, 468, 972
DpnII	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
Eam1104I	CTCTTC	4 cut(s)	32, 198, 204, 280
EarI	CTCTTC	4 cut(s)	32, 198, 204, 280
Eco147I	AGGCCT	2 cut(s)	809, 923
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	3 cut(s)	521, 620, 910
Eco91I	GGTNACC	1 cut(s)	324
EcoO65I	GGTNACC	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	1003
FaqI	GGGAC	3 cut(s)	418, 609, 633
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	993
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	993
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	1 cut(s)	993
HaeIII	GGCC	2 cut(s)	809, 923
HapII	CCGG	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	4 cut(s)	22, 431, 493, 626
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	2 cut(s)	165, 356
Hpy166II	GTNNAC	3 cut(s)	534, 683, 767
Hpy188I	TCNGA	3 cut(s)	510, 883, 1000
Hpy188III	TCNNGA	6 cut(s)	287, 371, 398, 404, 553, 974
Hpy8I	GTNNAC	3 cut(s)	534, 683, 767
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	5 cut(s)	98, 307, 338, 427, 531
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	6 cut(s)	377, 580, 586, 683, 693, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 374, 876
HpyF3I	CTNAG	4 cut(s)	182, 203, 507, 659
HpySE526I	ACGT	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
LguI	GCTCTTC	2 cut(s)	198, 280
LmnI	GCTCC	2 cut(s)	357, 373
LpnPI	CCDG	5 cut(s)	24, 384, 636, 636, 700
Lsp1109I	GCAGC	1 cut(s)	979
LweI	GCATC	3 cut(s)	364, 573, 979
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	4 cut(s)	41, 301, 324, 421
MalI	GATC	7 cut(s)	294, 312, 396, 402, 456, 468, 972
MboI	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
MboII	GAAGA	6 cut(s)	19, 185, 191, 267, 305, 856
MflI	RGATCY	2 cut(s)	310, 466
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	3 cut(s)	130, 267, 847
MlyI	GAGTC	1 cut(s)	440
MroXI	GAANNNNTTC	2 cut(s)	26, 192
MseI	TTAA	6 cut(s)	138, 209, 632, 729, 888, 906
MslI	CAYNNNNRTG	2 cut(s)	441, 581
MspCI	CTTAAG	4 cut(s)	208, 631, 728, 905
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	660
MwoI	GCNNNNNNNGC	3 cut(s)	357, 374, 876
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
NlaIV	GGNNCC	3 cut(s)	224, 621, 640
NmuCI	GTSAC	3 cut(s)	41, 301, 421
NspI	RCATGY	2 cut(s)	580, 592
NspV	TTCGAA	2 cut(s)	20, 739
PagI	TCATGA	2 cut(s)	403, 973
PceI	AGGCCT	2 cut(s)	809, 923
PciI	ACATGT	1 cut(s)	588
PciSI	GCTCTTC	2 cut(s)	198, 280
PctI	GAATGC	1 cut(s)	660
PdmI	GAANNNNTTC	2 cut(s)	26, 192
PfeI	GAWTC	3 cut(s)	22, 493, 626
PflFI	GACNNNGTC	1 cut(s)	914
PkrI	GCNGC	1 cut(s)	994
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	588
PshBI	ATTAAT	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	224, 621, 640
PspPI	GGNCC	3 cut(s)	521, 620, 910
PsuI	RGATCY	2 cut(s)	310, 466
PsyI	GACNNNGTC	1 cut(s)	914
RseI	CAYNNNNRTG	2 cut(s)	441, 581
SapI	GCTCTTC	2 cut(s)	198, 280
SaqAI	TTAA	6 cut(s)	138, 209, 632, 729, 888, 906
SatI	GCNGC	1 cut(s)	993
Sau3AI	GATC	7 cut(s)	292, 310, 394, 400, 454, 466, 970
Sau96I	GGNCC	3 cut(s)	521, 620, 910
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	3 cut(s)	364, 573, 979
SfuI	TTCGAA	2 cut(s)	20, 739
SinI	GGWCC	3 cut(s)	521, 620, 910
SmiMI	CAYNNNNRTG	2 cut(s)	441, 581
SmlI	CTYRAG	4 cut(s)	208, 631, 728, 905
SmoI	CTYRAG	4 cut(s)	208, 631, 728, 905
Sse9I	AATT	3 cut(s)	130, 267, 847
SseBI	AGGCCT	2 cut(s)	809, 923
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	2 cut(s)	809, 923
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	5 cut(s)	98, 307, 338, 427, 531
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	3 cut(s)	20, 739, 1005
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	3 cut(s)	130, 267, 847
TfiI	GAWTC	3 cut(s)	22, 493, 626
Tru1I	TTAA	6 cut(s)	138, 209, 632, 729, 888, 906
Tru9I	TTAA	6 cut(s)	138, 209, 632, 729, 888, 906
TscAI	CASTG	1 cut(s)	822
TseFI	GTSAC	3 cut(s)	41, 301, 421
TseI	GCWGC	1 cut(s)	992
Tsp45I	GTSAC	3 cut(s)	41, 301, 421
TspDTI	ATGAA	2 cut(s)	241, 305
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	822
Tth111I	GACNNNGTC	1 cut(s)	914
Vha464I	CTTAAG	4 cut(s)	208, 631, 728, 905
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	3 cut(s)	521, 620, 910
VspI	ATTAAT	1 cut(s)	138
XceI	RCATGY	2 cut(s)	580, 592
XmnI	GAANNNNTTC	2 cut(s)	26, 192
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.