Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009061.1

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Forward (+)

1877 .. 7117

Gene Structure 5241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgacagatccctacccatctaattacttcaatggttggttcaatctcaacttctctccccccacaccttctcttgcctataattttcatcatcatcatcaagctcctttctcaaattataacatgattaacaacaatagcaatagctttttcagtagccatcaccaatcttcatcatcacctccctctcctcctttgaaagaagcccttcctctactcagcttaagccctaaaagagatcatcaagatgaattagctgaggatcatgatcagcatgctgatgataatgatgatgatgaagaggaaactgttactgtggctttgcatttagggctaccaaaccctacctctgctgctgatttaatctcaaggctctcctcctcagagatctcatctgcagatagagaagatgcagtcactactcctaatgcttcttcacctggattgaaaggagattttgaggctgctttcaatcttataggtgcacttctgagtttttctgggaattttgaggcggcttttatgggcttcaaattcgctagtgatgagctcttgaagtatggggatgggtctaagtttgctttgctaattgagtttcagagtttgggattacaggtcagatgttttacctcttcaaaattggaaaatgttgctctctggaattttaatgaggttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

226

Amino Acids

24.86

Weight (kDa)

4.6

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	2 cut(s)	2, 270
AcsI	RAATTY	3 cut(s)	505, 533, 661
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	8 cut(s)	31, 43, 199, 448, 472, 532, 556, 636
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	5 cut(s)	104, 147, 222, 257, 550
AluI	AGCT	5 cut(s)	104, 147, 222, 257, 550
Alw21I	GWGCWC	2 cut(s)	487, 552
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	2, 270
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	353, 464
ApoI	RAATTY	3 cut(s)	505, 533, 661
Asp700I	GAANNNNTTC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	155, 171, 429
BaeGI	GKGCMC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	487, 552
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	340, 451
BccI	CCATC	3 cut(s)	25, 168, 560
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	3 cut(s)	354, 465, 516
BlsI	GCNGC	3 cut(s)	355, 466, 517
Bme1390I	CCNGG	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	4 cut(s)	232, 249, 396, 482
BseRI	GAGGAG	3 cut(s)	180, 367, 370
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	340, 451
BsiHKAI	GWGCWC	2 cut(s)	487, 552
Bsp1286I	GDGCHC	2 cut(s)	487, 552
Bsp143I	GATC	5 cut(s)	7, 238, 262, 268, 387
BspACI	CCGC	1 cut(s)	515
BspCNI	CTCAG	4 cut(s)	231, 250, 395, 483
BspHI	TCATGA	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	2, 270
BspTI	CTTAAG	1 cut(s)	223
BssMI	GATC	5 cut(s)	7, 238, 262, 268, 387
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	310, 316
Bst6I	CTCTTC	2 cut(s)	294, 637
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	5 cut(s)	218, 258, 382, 491, 573
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	5 cut(s)	10, 241, 265, 271, 390
BstMBI	GATC	5 cut(s)	7, 238, 262, 268, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	340, 451
BstX2I	RGATCY	2 cut(s)	7, 387
BstYI	RGATCY	2 cut(s)	7, 387
BtsCI	GGATG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	265
CviAII	CATG	3 cut(s)	124, 266, 275
DdeI	CTNAG	5 cut(s)	218, 258, 382, 491, 573
DpnI	GATC	5 cut(s)	9, 240, 264, 270, 389
DpnII	GATC	5 cut(s)	7, 238, 262, 268, 387
Eam1104I	CTCTTC	2 cut(s)	294, 637
EarI	CTCTTC	2 cut(s)	294, 637
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	3 cut(s)	127, 269, 278
FaiI	YATR	8 cut(s)	81, 120, 125, 267, 276, 479, 524, 561
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	3 cut(s)	123, 265, 274
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	354, 465, 516
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	3 cut(s)	354, 465, 516
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	3 cut(s)	354, 465, 516
Hin1II	CATG	3 cut(s)	127, 269, 278
HphI	GGTGA	3 cut(s)	155, 171, 429
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	4 cut(s)	385, 492, 600, 620
Hpy188III	TCNNGA	4 cut(s)	245, 266, 553, 658
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	78, 218
HpyCH4III	ACNGT	2 cut(s)	310, 316
HpyCH4V	TGCA	4 cut(s)	325, 398, 413, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	5 cut(s)	218, 258, 382, 491, 573
Hsp92II	CATG	3 cut(s)	127, 269, 278
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	7, 238, 262, 268, 387
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	426, 453, 486, 599, 643
Lsp1109I	GCAGC	2 cut(s)	340, 451
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	310, 415
MalI	GATC	5 cut(s)	9, 240, 264, 270, 389
MboI	GATC	5 cut(s)	7, 238, 262, 268, 387
MboII	GAAGA	5 cut(s)	162, 311, 419, 426, 624
MflI	RGATCY	2 cut(s)	7, 387
MhlI	GDGCHC	2 cut(s)	487, 552
MluCI	AATT	9 cut(s)	22, 82, 115, 251, 505, 533, 588, 638, 661
MmeI	TCCRAC	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	4 cut(s)	129, 224, 362, 666
MslI	CAYNNNNRTG	2 cut(s)	246, 279
MspCI	CTTAAG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	5 cut(s)	7, 238, 262, 268, 387
NlaIII	CATG	3 cut(s)	127, 269, 278
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	355, 466, 517
PsiI	TTATAA	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	2 cut(s)	7, 387
RseI	CAYNNNNRTG	2 cut(s)	246, 279
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	129, 224, 362, 666
SatI	GCNGC	3 cut(s)	354, 465, 516
Sau3AI	GATC	5 cut(s)	7, 238, 262, 268, 387
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	2 cut(s)	487, 552
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	2 cut(s)	246, 279
SmlI	CTYRAG	2 cut(s)	223, 367
SmoI	CTYRAG	2 cut(s)	223, 367
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	9 cut(s)	22, 82, 115, 251, 505, 533, 588, 638, 661
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	310, 316
TasI	AATT	9 cut(s)	22, 82, 115, 251, 505, 533, 588, 638, 661
TauI	GCSGC	1 cut(s)	518
Tru1I	TTAA	4 cut(s)	129, 224, 362, 666
Tru9I	TTAA	4 cut(s)	129, 224, 362, 666
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	353, 464
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	77, 162, 264, 312
Vha464I	CTTAAG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	483
XapI	RAATTY	3 cut(s)	505, 533, 661
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.