Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

1616043 .. 1616585

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTTCTCCTTTTTGAGTTGGTGATTTTGTTCAATAGGTCTCCACTCTCCACCTTATCATTACCTTTTGGTTCTTTCTCTCTCTTTCTTCTGTGCGTACACTGTATAGTGTATACTATATTAACCCAATCCCAGCAAAACCAATCCATTCTCTCTCACCATATCATGACAGATCCCTACCCTAATTACTTCAATAATGGTTGGTTTAATATCAACCCTCTCCACCACTTCTCTTCCACCTCCACACCTTCCTCTGTTAATCCATATAATTATCACCCTCCTAATTATGGAGATTACCACAATTTCTGCTCATCAAACAACTCGATCAACAATATTAACAATACCCTTTTCACTAATCACCACCACCAATCTTCATCACCTCCCTCTCCTCCTCTAAGAGAAGCCCTTCCACTCCTCAGCCAAAGCCCTTCAAGAAGTCACCACCACGAAGACATGCAAGAATCAGCTGCTGCTGATGACCATCAAAGCTTCTTGAGCTCTTCTAGGTCTGATGATATTGTTGATCGATCAAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

181

Amino Acids

20.55

Weight (kDa)

6.36

Isoelectric Point (pI)

80.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	34, 193, 432
AluBI	AGCT	3 cut(s)	467, 489, 498
AluI	AGCT	3 cut(s)	467, 489, 498
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	467, 470
Asp700I	GAANNNNTTC	1 cut(s)	405
AsuHPI	GGTGA	6 cut(s)	34, 149, 266, 350, 369, 431
BanII	GRGCYC	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	454, 457
BccI	CCATC	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	2 cut(s)	468, 471
BlsI	GCNGC	2 cut(s)	469, 472
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	514
Bsa29I	ATCGAT	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	526
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	430
BseRI	GAGGAG	3 cut(s)	378, 381, 404
BseXI	GCAGC	2 cut(s)	454, 457
BseYI	CCCAGC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	172, 324, 523, 527
BspCNI	CTCAG	1 cut(s)	429
BspDI	ATCGAT	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	165
BspPI	GGATC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	45
BssMI	GATC	4 cut(s)	172, 324, 523, 527
BssNAI	GTATAC	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	238, 505
BstDEI	CTNAG	2 cut(s)	395, 416
BstKTI	GATC	4 cut(s)	175, 327, 526, 530
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	172, 324, 523, 527
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	454, 457
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	526
BsuTUI	ATCGAT	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	165
ClaI	ATCGAT	1 cut(s)	526
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	166, 454
CviJI	RGCY	6 cut(s)	404, 420, 426, 467, 489, 498
CviKI_1	RGCY	6 cut(s)	404, 420, 426, 467, 489, 498
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	395, 416
DpnI	GATC	4 cut(s)	174, 326, 525, 529
DpnII	GATC	4 cut(s)	172, 324, 523, 527
Eam1104I	CTCTTC	2 cut(s)	238, 505
EarI	CTCTTC	2 cut(s)	238, 505
Ecl136II	GAGCTC	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	500
FaeI	CATG	2 cut(s)	169, 457
FaiI	YATR	9 cut(s)	107, 114, 119, 162, 167, 265, 267, 288, 455
FatI	CATG	2 cut(s)	165, 453
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	468, 471
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	2 cut(s)	468, 471
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	2 cut(s)	468, 471
GsaI	CCCAGC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	169, 457
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	1 cut(s)	461
HphI	GGTGA	6 cut(s)	34, 149, 266, 350, 369, 431
Hpy166II	GTNNAC	2 cut(s)	100, 114
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	4 cut(s)	166, 432, 493, 531
Hpy8I	GTNNAC	2 cut(s)	100, 114
HpyAV	CCTTC	3 cut(s)	258, 416, 438
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	2 cut(s)	395, 416
Hsp92II	CATG	2 cut(s)	169, 457
Kzo9I	GATC	4 cut(s)	172, 324, 523, 527
LguI	GCTCTTC	1 cut(s)	505
LpnPI	CCDG	1 cut(s)	146
Lsp1109I	GCAGC	2 cut(s)	454, 457
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	4 cut(s)	174, 326, 525, 529
MboI	GATC	4 cut(s)	172, 324, 523, 527
MboII	GAAGA	5 cut(s)	80, 225, 363, 461, 492
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	4 cut(s)	184, 268, 283, 301
MnlI	CCTC	9 cut(s)	228, 250, 262, 288, 390, 394, 399, 402, 425
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	4 cut(s)	122, 207, 258, 336
MspA1I	CMGCKG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	4 cut(s)	172, 324, 523, 527
NlaIII	CATG	2 cut(s)	169, 457
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	469, 472
Psp124BI	GAGCTC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	500
SapI	GCTCTTC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	122, 207, 258, 336
SatI	GCNGC	2 cut(s)	468, 471
Sau3AI	GATC	4 cut(s)	172, 324, 523, 527
SduI	GDGCHC	1 cut(s)	500
SgeI	CNNG	9 cut(s)	145, 178, 334, 444, 458, 466, 470, 505, 516
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	4 cut(s)	184, 268, 283, 301
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	323, 526
TasI	AATT	4 cut(s)	184, 268, 283, 301
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	4 cut(s)	122, 207, 258, 336
Tru9I	TTAA	4 cut(s)	122, 207, 258, 336
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	2 cut(s)	467, 470
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	107
XceI	RCATGY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.