Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

2025648 .. 2028561

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1024400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACAGATCCCTACCCTAATTACTTCAATAATGGTTGGTTTAATATCAACCATGTCCACCACTTCTCTTCCACCTCCACACCTTCCTCTGTTAATCCATATAATTATCACCCTCCTAATTATGGAGATTACCACAATTTCTGCTCATCAAACAACTTGATCAACAATATTAACAATACCCTTTTCACTAATCACCACCACCAATCTTCATCACCTCCCTCTCCTCCTCTAAGAGAAGCCCTTCCACTCCTCAGCCAAAGCCCTTCAAGAAATCACCACCACGAAGACATGCAAGAATCAGCTGCTGCTGATGACCATCAAAGCTTCTTGAGCTCTTCTAGGTCTGATGATATTGTTGATCATCAAGAAGAAGATGATGAAACTGTTACTGTGGCTTTACATTTAGGGCTTCCAAGCAGAACTCTATCTTCAGCTGATTTAATCTCCAGGCTCTCTTCCCCAGAAATCCCATCAGATAAAGAAGCAGATGTGACTGTTGCTTCAGCTGGTTTTGCATCAAACAGGCTCAACAAAGGACAGTACTGGATCCCTACTCCTGCTCAAATTTTAATTGGTCCAACCCAGTTCTCATGCCCTCTTTGCTTCAAGACCTTCAATAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGGAAAGGGCCAGAATCTCTAAGGGGAACACAACCAACAGCCATGCTTAGACTGCCTTGCTATTGCTGTGCGCCAGGTTGCAGAAACAACATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTACAAACCCATTACAAGAGAAAGCATGGGATCAAACCCTTCATGTGTAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGTGATTGGCGAACCCATGAAAAAAATTGTGGCAAACTTTGGTATTGCACTTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTCAAAGATCATATCAAGGCATTTGGACAAGGCCATGCAGCTTATGGAATTGACTGTTTTGAAGAGGAAGATGATGTAGCTTCTGAAATTGAGGAAAATGACTCCTCCTCCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

358

Amino Acids

40.43

Weight (kDa)

6.77

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	242 - 276	4e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	279 - 303	7.1e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	2, 541, 554, 664, 836
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	3 cut(s)	414, 486, 775
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	122, 769
AgsI	TTSAA	6 cut(s)	28, 267, 607, 616, 943, 1019
AjnI	CCWGG	2 cut(s)	446, 739
AluBI	AGCT	7 cut(s)	302, 324, 333, 434, 506, 998, 1037
AluI	AGCT	7 cut(s)	302, 324, 333, 434, 506, 998, 1037
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	960
AlwI	GGATC	5 cut(s)	2, 541, 554, 664, 836
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	674, 988
ApeKI	GCWGC	3 cut(s)	302, 305, 995
ApoI	RAATTY	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	2 cut(s)	575, 674
AsuHPI	GGTGA	5 cut(s)	101, 185, 204, 266, 890
AvaII	GGWCC	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	289, 292, 1007
BccI	CCATC	3 cut(s)	324, 478, 771
BciT130I	CCWGG	2 cut(s)	448, 741
BclI	TGATCA	2 cut(s)	159, 358
BcoDI	GTCTC	1 cut(s)	960
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	3 cut(s)	303, 306, 996
BlsI	GCNGC	3 cut(s)	304, 307, 997
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	448, 741
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	575, 674
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	2 cut(s)	448, 741
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	524, 627
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	1 cut(s)	767
BsaXI	ACNNNNNCTCC	1 cut(s)	1049
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 769
Bse1I	ACTGG	2 cut(s)	548, 583
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	448, 741
BseDI	CCNNGG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	122, 769
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	548, 583
BseRI	GAGGAG	5 cut(s)	213, 216, 239, 1051, 1054
BseXI	GCAGC	3 cut(s)	289, 292, 1007
BshFI	GGCC	2 cut(s)	676, 990
BsiHKAI	GWGCWC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	122, 769
BsmAI	GTCTC	1 cut(s)	960
BsnI	GGCC	2 cut(s)	676, 990
Bso31I	GGTCTC	1 cut(s)	960
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
BspANI	GGCC	2 cut(s)	676, 990
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	548
BspPI	GGATC	5 cut(s)	2, 541, 554, 664, 836
BspQI	GCTCTTC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	960
BsrI	ACTGG	2 cut(s)	548, 583
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	448, 741
Bst4CI	ACNGT	5 cut(s)	385, 391, 496, 540, 1013
Bst6I	CTCTTC	4 cut(s)	73, 340, 460, 1014
BstDEI	CTNAG	4 cut(s)	230, 251, 686, 713
BstF5I	GGATG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	7 cut(s)	10, 162, 361, 549, 659, 831, 967
BstMAI	GTCTC	1 cut(s)	960
BstMBI	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
BstMWI	GCNNNNNNNGC	5 cut(s)	330, 512, 600, 718, 930
BstNI	CCWGG	2 cut(s)	448, 741
BstNSI	RCATGY	2 cut(s)	292, 634
BstSCI	CCNGG	2 cut(s)	446, 739
BstV1I	GCAGC	3 cut(s)	289, 292, 1007
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	3 cut(s)	7, 546, 656
BstYI	RGATCY	3 cut(s)	7, 546, 656
BsuRI	GGCC	2 cut(s)	676, 990
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	1 cut(s)	876
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	2 cut(s)	575, 674
Csp6I	GTAC	1 cut(s)	541
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	230, 251, 686, 713
DpnI	GATC	7 cut(s)	9, 161, 360, 548, 658, 830, 966
DpnII	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
Eam1104I	CTCTTC	4 cut(s)	73, 340, 460, 1014
EarI	CTCTTC	4 cut(s)	73, 340, 460, 1014
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	960
Eco47I	GGWCC	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	333
Eco57I	CTGAAG	3 cut(s)	414, 486, 775
EcoICRI	GAGCTC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	446, 739
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	767
FauNDI	CATATG	1 cut(s)	642
FbaI	TGATCA	2 cut(s)	159, 358
Fnu4HI	GCNGC	3 cut(s)	303, 306, 996
FokI	GGATG	1 cut(s)	750
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	303, 306, 996
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	3 cut(s)	303, 306, 996
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	676, 990
HhaI	GCGC	1 cut(s)	739
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	3 cut(s)	296, 680, 1058
HphI	GGTGA	5 cut(s)	101, 185, 204, 266, 890
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	5 cut(s)	346, 475, 794, 937, 1042
Hpy188III	TCNNGA	4 cut(s)	267, 328, 365, 607
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	93, 251, 273, 622, 847
HpyCH4III	ACNGT	5 cut(s)	385, 391, 496, 540, 1013
HpyCH4V	TGCA	8 cut(s)	292, 515, 634, 640, 747, 869, 924, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	330, 512, 600, 718, 930
HpyF3I	CTNAG	4 cut(s)	230, 251, 686, 713
HspAI	GCGC	1 cut(s)	737
Ksp22I	TGATCA	2 cut(s)	159, 358
Kzo9I	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
LguI	GCTCTTC	1 cut(s)	340
Lsp1109I	GCAGC	3 cut(s)	289, 292, 1007
LweI	GCATC	2 cut(s)	524, 627
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	385, 490
MalI	GATC	7 cut(s)	9, 161, 360, 548, 658, 830, 966
MboI	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
MflI	RGATCY	3 cut(s)	7, 546, 656
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	1 cut(s)	602
Mph1103I	ATGCAT	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	5 cut(s)	42, 93, 171, 440, 569
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	3 cut(s)	302, 434, 506
MspR9I	CCNGG	2 cut(s)	448, 741
MvaI	CCWGG	2 cut(s)	448, 741
MwoI	GCNNNNNNNGC	5 cut(s)	330, 512, 600, 718, 930
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
NlaIV	GGNNCC	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	2 cut(s)	292, 634
PciSI	GCTCTTC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	296, 680
PkrI	GCNGC	3 cut(s)	304, 307, 997
PleI	GAGTC	1 cut(s)	1052
PpsI	GAGTC	1 cut(s)	1052
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	446, 739
PspGI	CCWGG	2 cut(s)	446, 739
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	2 cut(s)	575, 674
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	3 cut(s)	7, 546, 656
PvuII	CAGCTG	3 cut(s)	302, 434, 506
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	5 cut(s)	42, 93, 171, 440, 569
SatI	GCNGC	3 cut(s)	303, 306, 996
Sau3AI	GATC	7 cut(s)	7, 159, 358, 546, 656, 828, 964
Sau96I	GGNCC	2 cut(s)	575, 674
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	2 cut(s)	448, 741
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	2 cut(s)	524, 627
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	446, 739
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	5 cut(s)	385, 391, 496, 540, 1013
TasI	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	296, 680
Tru1I	TTAA	5 cut(s)	42, 93, 171, 440, 569
Tru9I	TTAA	5 cut(s)	42, 93, 171, 440, 569
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	302, 305, 995
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	4 cut(s)	198, 393, 829, 909
TspRI	CASTG	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	2 cut(s)	292, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.