Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Forward (+)

35958383 .. 35961274

Gene Structure 2892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACAGATCCTTACTACCCGTCCAATTACTTCAATGGTTGGTTCAATCTCAACTTCTCTCCACCCGCACCTTCCCTTGCCTATACTCTTCATCATCATCAAGCTCCTTTCTCAAATTATAACATGATCAATAACAACAGCCATAGCTTTTTCAGTACCCATCCCCAGTCTTCATCATCAGTTTCATCATCACCTCCCTCTCCTCCTTTGAAAGAAGCCCTTCCTCTACTCAGCCAAAGCCCTACTAGAGATCATCCAGATGAAATATTAGCTGAGGATCATGATCACCATGCTGATGATAATGATGAAGATGAAGATAATGAGGAAACTGTTACTGTGGCTTTGCATTTAGGGCTTCCAAACCCTAGCTCTGCTGCTGATTTAATCTCAAGGCTCTCCTCCTCAGAGATCTCATCTGCAGATAGAGAAGATGCAGCTGCTACTCCTAATGCTTCTTCACTTGGGTATGTCTCAAACAGACTCAACAAGGGCCAGTATTGGATCCCAACTCCTTCTCAAATTTTAATTGGTCCAACTCAATTTTCTTGCCCCCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGAGTCTCTAAGGGGAACCCAACCGACAGCCATGCTTAGACTCCCTTGCTATTGCTGTGCACCAGGTTGCAGGAACAACATTGACCATCCTAGGTCAAAGCCTCTCAAAGACTTCAGAACCCTCCAAACCCATTACAAGAGAAAACATGGGATCAAGCCTTTCATGTGTAGGAAATGTGGCAAAGCGTTTGCAGTGAGAGGTGACTGGAGAACCCATGAGAAGAACTGCGGCAAGCTTTGGTACTGCACTTGTGGCTCGGATTTCAAGCACAAGAGGTCTCTCAAGGATCATATCAAGGCTTTTGGACAAGGACATGCAGCTTATGGCATTGATTGTTTTGAAGAAGAAGAAGATGATGATGCGGCCTCTGAAATTGAAGAAAATGACTCTTGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

344

Amino Acids

38.64

Weight (kDa)

6.19

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	227 - 261	1.1e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	264 - 288	6.8e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AciI	CCGC	3 cut(s)	66, 861, 995
AclWI	GGATC	7 cut(s)	2, 285, 496, 509, 619, 791, 927
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	730
AfaI	GTAC	2 cut(s)	157, 875
AgsI	TTSAA	8 cut(s)	34, 46, 211, 562, 571, 898, 974, 1010
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	7 cut(s)	104, 147, 272, 369, 437, 868, 953
AluI	AGCT	7 cut(s)	104, 147, 272, 369, 437, 868, 953
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	3 cut(s)	475, 642, 915
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	7 cut(s)	2, 285, 496, 509, 619, 791, 927
AoxI	GGCC	2 cut(s)	490, 996
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	4 cut(s)	374, 434, 437, 950
ApoI	RAATTY	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	219
AspA2I	CCTAGG	1 cut(s)	722
AspS9I	GGNCC	3 cut(s)	490, 530, 629
AsuHPI	GGTGA	3 cut(s)	183, 278, 845
AvaII	GGWCC	2 cut(s)	530, 629
AvrII	CCTAGG	1 cut(s)	722
BaeGI	GKGCMC	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	694
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	361, 424, 446, 962
BccI	CCATC	2 cut(s)	168, 726
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	2 cut(s)	126, 283
BcoDI	GTCTC	3 cut(s)	475, 642, 915
BfaI	CTAG	3 cut(s)	246, 366, 723
BfmI	CTRYAG	1 cut(s)	417
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	6 cut(s)	375, 435, 438, 862, 951, 996
BlnI	CCTAGG	1 cut(s)	722
BlsI	GCNGC	6 cut(s)	376, 436, 439, 863, 952, 997
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	2 cut(s)	530, 629
BmgT120I	GGNCC	3 cut(s)	490, 530, 629
BmiI	GGNNCC	2 cut(s)	503, 649
BmrFI	CCNGG	1 cut(s)	696
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	421, 582, 982
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	859
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	373, 899
BsaBI	GATNNNNATC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	915
BsaJI	CCNNGG	1 cut(s)	722
Bse1I	ACTGG	3 cut(s)	166, 493, 842
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	3 cut(s)	160, 253, 718
BseJI	GATNNNNATC	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	244, 264, 417
BseNI	ACTGG	3 cut(s)	166, 493, 842
BseRI	GAGGAG	3 cut(s)	192, 388, 391
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	4 cut(s)	361, 424, 446, 962
BsgI	GTGCAG	1 cut(s)	862
BshFI	GGCC	2 cut(s)	492, 998
BsiHKAI	GWGCWC	1 cut(s)	694
BsmAI	GTCTC	3 cut(s)	475, 642, 915
BsnI	GGCC	2 cut(s)	492, 998
Bso31I	GGTCTC	1 cut(s)	915
Bsp1286I	GDGCHC	1 cut(s)	694
BspACI	CCGC	3 cut(s)	66, 861, 995
BspANI	GGCC	2 cut(s)	492, 998
BspCNI	CTCAG	3 cut(s)	243, 265, 416
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	503, 649
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	7 cut(s)	2, 285, 496, 509, 619, 791, 927
BspTNI	GGTCTC	1 cut(s)	915
BsrI	ACTGG	3 cut(s)	166, 493, 842
BssECI	CCNNGG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	331, 337
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	866
BstDEI	CTNAG	5 cut(s)	230, 273, 403, 641, 668
BstF5I	GGATG	3 cut(s)	160, 253, 718
BstMAI	GTCTC	3 cut(s)	475, 642, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 555, 885
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	2 cut(s)	589, 950
BstPAI	GACNNNNGTC	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	361, 424, 446, 962
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	4 cut(s)	7, 408, 501, 611
BstYI	RGATCY	4 cut(s)	7, 408, 501, 611
BsuRI	GGCC	2 cut(s)	492, 998
BtsCI	GGATG	3 cut(s)	160, 253, 718
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	1 cut(s)	831
Cac8I	GCNNGC	1 cut(s)	866
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	490, 530, 629
CsiI	ACCWGGT	1 cut(s)	694
Csp6I	GTAC	2 cut(s)	156, 874
CviQI	GTAC	2 cut(s)	156, 874
DdeI	CTNAG	5 cut(s)	230, 273, 403, 641, 668
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	915
Eco47I	GGWCC	2 cut(s)	530, 629
Eco57I	CTGAAG	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	722
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FauI	CCCGC	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	2 cut(s)	126, 283
Fnu4HI	GCNGC	6 cut(s)	375, 435, 438, 862, 951, 996
FokI	GGATG	3 cut(s)	147, 240, 705
Fsp4HI	GCNGC	6 cut(s)	375, 435, 438, 862, 951, 996
FspBI	CTAG	3 cut(s)	246, 366, 723
GluI	GCNGC	6 cut(s)	375, 435, 438, 862, 951, 996
GsuI	CTGGAG	1 cut(s)	859
HaeIII	GGCC	2 cut(s)	492, 998
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	4 cut(s)	480, 635, 672, 1019
HphI	GGTGA	3 cut(s)	183, 278, 845
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	4 cut(s)	406, 749, 892, 1003
Hpy188III	TCNNGA	3 cut(s)	257, 281, 562
Hpy8I	GTNNAC	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	81, 230, 522, 577
HpyCH4III	ACNGT	2 cut(s)	331, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 555, 885
HpyF3I	CTNAG	5 cut(s)	230, 273, 403, 641, 668
Ksp22I	TGATCA	2 cut(s)	126, 283
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	179, 270, 506, 645, 681, 688, 708, 823
Lsp1109I	GCAGC	4 cut(s)	361, 424, 446, 962
LweI	GCATC	3 cut(s)	421, 582, 982
MabI	ACCWGGT	1 cut(s)	694
MaeI	CTAG	3 cut(s)	246, 366, 723
MaeIII	GTNAC	2 cut(s)	331, 833
MflI	RGATCY	4 cut(s)	7, 408, 501, 611
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	6 cut(s)	25, 115, 519, 525, 539, 1005
MlyI	GAGTC	4 cut(s)	474, 644, 666, 1013
MmeI	TCCRAC	1 cut(s)	557
Mph1103I	ATGCAT	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	2 cut(s)	383, 524
MslI	CAYNNNNRTG	3 cut(s)	258, 294, 590
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	3 cut(s)	352, 555, 885
NdeI	CATATG	1 cut(s)	597
NlaIV	GGNNCC	2 cut(s)	503, 649
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	2 cut(s)	589, 950
PagI	TCATGA	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	6 cut(s)	376, 436, 439, 863, 952, 997
PleI	GAGTC	4 cut(s)	474, 643, 666, 1013
PpsI	GAGTC	4 cut(s)	474, 643, 666, 1013
PshAI	GACNNNNGTC	1 cut(s)	634
PsiI	TTATAA	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	503, 649
PspPI	GGNCC	3 cut(s)	490, 530, 629
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	4 cut(s)	7, 408, 501, 611
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	157, 875
RsaNI	GTAC	2 cut(s)	156, 874
RseI	CAYNNNNRTG	3 cut(s)	258, 294, 590
SaqAI	TTAA	2 cut(s)	383, 524
SatI	GCNGC	6 cut(s)	375, 435, 438, 862, 951, 996
Sau96I	GGNCC	3 cut(s)	490, 530, 629
SchI	GAGTC	4 cut(s)	474, 644, 666, 1013
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	694
SexAI	ACCWGGT	1 cut(s)	694
SfaNI	GCATC	3 cut(s)	421, 582, 982
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	530, 629
SmiMI	CAYNNNNRTG	3 cut(s)	258, 294, 590
SmlI	CTYRAG	2 cut(s)	388, 914
SmoI	CTYRAG	2 cut(s)	388, 914
Sse9I	AATT	6 cut(s)	25, 115, 519, 525, 539, 1005
SsiI	CCGC	3 cut(s)	66, 861, 995
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	3 cut(s)	246, 366, 723
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	2 cut(s)	331, 337
TasI	AATT	6 cut(s)	25, 115, 519, 525, 539, 1005
TauI	GCSGC	2 cut(s)	864, 998
Tru1I	TTAA	2 cut(s)	383, 524
Tru9I	TTAA	2 cut(s)	383, 524
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	4 cut(s)	374, 434, 437, 950
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	7 cut(s)	80, 162, 174, 276, 321, 327, 784
TspRI	CASTG	1 cut(s)	831
VneI	GTGCAC	1 cut(s)	690
VpaK11BI	GGWCC	2 cut(s)	530, 629
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	2 cut(s)	589, 950
XmaJI	CCTAGG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	246, 366, 723
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.