Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Forward (+)

82916977 .. 82919941

Gene Structure 2965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACAGATCCCTACCCATCTAATTACTTCAATGGTTGGTTCAATCTCAACTTCTCTCCCCCCACACCTTCTCTTGCCTATAATTTTCATCATCATCATCAAGCTCCTTTCTCAAATTATAACATGATTAACAACAATAGCAATAGCTTTTTCAGTAGCCATCACCAATCTTCATCATCACCTCCCTCTCCTCCTTTGAAAGAAGCCCTTCCTCTACTCAGCTTAAGCCCTAAAAGAGATCATCAAGATGAATTAGCTGAGGATCATGATCAGCATGCTGATGATAATGATGATGATGAAGAGGAAACTGTTACTGTGGCTTTGCATTTAGGGCTACCAAACCCTACCTCTGCTGCTGATTTAATCTCAAGGCTCTCCTCCTCAGAGATCTCATCTGCAGATAGAGAAGATGCAGTCACTACTCCTAATGCTTCTTCACCTGGGTATGTCTCAAACAGACTCAACAAGGGCCAGTATTGGATCCCAACACCTTCTCAAATTTTAATTGGTCCAACCCAGTTCTCTTGCCCCCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCAGAGTCCCTAAGAGGAACCCAACCAACAGCCATGCTTAGACTCCCTTGCTATTGCTGTGCACCAGGTTGCAGGAACAACATTGACCATCCTAGGTCAAAGCCTCTCAAAGACTTCAGAACCCTCCAAACCCATTACAAGAGAAAACATGGGATCAAGCCTTTCATGTGTAGGAAATGTGGCAAGGCTTTTGCGGTGAGAGGTGATTGGAGAACCCATGAGAAGAATTGCGGCAAGCTTTGGTACTGCACTTGTGGCTCGGATTTCAAGCACAAGAGCTTATGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

299

Amino Acids

34.02

Weight (kDa)

8.44

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	220 - 254	8.8e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	257 - 281	5.7e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AciI	CCGC	2 cut(s)	803, 840
AclWI	GGATC	6 cut(s)	2, 270, 475, 488, 598, 770
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	709
AfaI	GTAC	1 cut(s)	854
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	6 cut(s)	31, 43, 199, 541, 550, 877
AjnI	CCWGG	2 cut(s)	439, 673
AluBI	AGCT	6 cut(s)	104, 147, 222, 257, 847, 888
AluI	AGCT	6 cut(s)	104, 147, 222, 257, 847, 888
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	6 cut(s)	2, 270, 475, 488, 598, 770
AoxI	GGCC	2 cut(s)	469, 608
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	207
AspA2I	CCTAGG	1 cut(s)	701
AspS9I	GGNCC	3 cut(s)	469, 509, 608
AsuHPI	GGTGA	5 cut(s)	155, 171, 429, 817, 824
AvaII	GGWCC	1 cut(s)	509
AvrII	CCTAGG	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	673
BamHI	GGATCC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	673
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	25, 168, 705
BciT130I	CCWGG	2 cut(s)	441, 675
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	2 cut(s)	354, 841
BlnI	CCTAGG	1 cut(s)	701
BlsI	GCNGC	2 cut(s)	355, 842
Bme1390I	CCNGG	2 cut(s)	441, 675
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	3 cut(s)	469, 509, 608
BmiI	GGNNCC	2 cut(s)	482, 628
BmrFI	CCNGG	2 cut(s)	441, 675
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	2 cut(s)	400, 561
BmuI	ACTGGG	1 cut(s)	511
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	440, 701
Bse1I	ACTGG	2 cut(s)	472, 517
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	441, 675
BseDI	CCNNGG	2 cut(s)	440, 701
BseGI	GGATG	1 cut(s)	697
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	232, 249, 396
BseNI	ACTGG	2 cut(s)	472, 517
BseRI	GAGGAG	3 cut(s)	180, 367, 370
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	841
BshFI	GGCC	2 cut(s)	471, 610
BsiHKAI	GWGCWC	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	601
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	471, 610
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
BspACI	CCGC	2 cut(s)	803, 840
BspANI	GGCC	2 cut(s)	471, 610
BspCNI	CTCAG	3 cut(s)	231, 250, 395
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	482, 628
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	6 cut(s)	2, 270, 475, 488, 598, 770
BspTI	CTTAAG	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	472, 517
BssECI	CCNNGG	2 cut(s)	440, 701
BssMI	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	2 cut(s)	441, 675
Bst4CI	ACNGT	2 cut(s)	310, 316
Bst6I	CTCTTC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	276, 845
BstDEI	CTNAG	5 cut(s)	218, 258, 382, 620, 647
BstF5I	GGATG	1 cut(s)	697
BstKTI	GATC	8 cut(s)	10, 241, 265, 271, 390, 483, 593, 765
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 534, 864
BstNI	CCWGG	2 cut(s)	441, 675
BstNSI	RCATGY	2 cut(s)	278, 568
BstSCI	CCNGG	2 cut(s)	439, 673
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	4 cut(s)	7, 387, 480, 590
BstYI	RGATCY	4 cut(s)	7, 387, 480, 590
BsuRI	GGCC	2 cut(s)	471, 610
BtsCI	GGATG	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	276, 845
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	469, 509, 608
CsiI	ACCWGGT	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	853
CviAII	CATG	9 cut(s)	124, 266, 275, 565, 587, 643, 758, 775, 827
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	5 cut(s)	218, 258, 382, 620, 647
DpnI	GATC	8 cut(s)	9, 240, 264, 270, 389, 482, 592, 764
DpnII	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	439, 673
EcoT14I	CCWWGG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	9 cut(s)	127, 269, 278, 568, 590, 646, 761, 778, 830
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	9 cut(s)	123, 265, 274, 564, 586, 642, 757, 774, 826
FauNDI	CATATG	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	354, 841
FokI	GGATG	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	354, 841
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	2 cut(s)	354, 841
HaeIII	GGCC	2 cut(s)	471, 610
Hin1II	CATG	9 cut(s)	127, 269, 278, 568, 590, 646, 761, 778, 830
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	3 cut(s)	459, 614, 651
HphI	GGTGA	5 cut(s)	155, 171, 429, 817, 824
Hpy166II	GTNNAC	1 cut(s)	671
Hpy188I	TCNGA	3 cut(s)	385, 728, 871
Hpy188III	TCNNGA	3 cut(s)	245, 266, 541
Hpy8I	GTNNAC	1 cut(s)	671
HpyAV	CCTTC	4 cut(s)	78, 218, 501, 556
HpyCH4III	ACNGT	2 cut(s)	310, 316
HpyCH4V	TGCA	8 cut(s)	325, 398, 413, 568, 574, 671, 681, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 534, 864
HpyF3I	CTNAG	5 cut(s)	218, 258, 382, 620, 647
Hsp92II	CATG	9 cut(s)	127, 269, 278, 568, 590, 646, 761, 778, 830
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	426, 453, 485, 530, 624, 660, 667, 687
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	2 cut(s)	400, 561
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	310, 415
MalI	GATC	8 cut(s)	9, 240, 264, 270, 389, 482, 592, 764
MboI	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
MboII	GAAGA	5 cut(s)	162, 311, 419, 426, 844
MflI	RGATCY	4 cut(s)	7, 387, 480, 590
MhlI	GDGCHC	1 cut(s)	673
MluCI	AATT	7 cut(s)	22, 82, 115, 251, 498, 504, 835
MlyI	GAGTC	3 cut(s)	453, 623, 645
MmeI	TCCRAC	1 cut(s)	536
Mph1103I	ATGCAT	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	4 cut(s)	129, 224, 362, 503
MslI	CAYNNNNRTG	3 cut(s)	246, 279, 569
MspCI	CTTAAG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	441, 675
MvaI	CCWGG	2 cut(s)	441, 675
MwoI	GCNNNNNNNGC	3 cut(s)	331, 534, 864
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
NlaIII	CATG	9 cut(s)	127, 269, 278, 568, 590, 646, 761, 778, 830
NlaIV	GGNNCC	2 cut(s)	482, 628
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	2 cut(s)	278, 568
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	355, 842
PleI	GAGTC	3 cut(s)	453, 622, 645
PpsI	GAGTC	3 cut(s)	453, 622, 645
PsiI	TTATAA	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	439, 673
PspGI	CCWGG	2 cut(s)	439, 673
PspN4I	GGNNCC	2 cut(s)	482, 628
PspPI	GGNCC	3 cut(s)	469, 509, 608
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	4 cut(s)	7, 387, 480, 590
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	3 cut(s)	246, 279, 569
SaqAI	TTAA	4 cut(s)	129, 224, 362, 503
SatI	GCNGC	2 cut(s)	354, 841
Sau3AI	GATC	8 cut(s)	7, 238, 262, 268, 387, 480, 590, 762
Sau96I	GGNCC	3 cut(s)	469, 509, 608
SchI	GAGTC	3 cut(s)	453, 623, 645
ScrFI	CCNGG	2 cut(s)	441, 675
SduI	GDGCHC	1 cut(s)	673
SexAI	ACCWGGT	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	400, 561
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	3 cut(s)	246, 279, 569
SmlI	CTYRAG	2 cut(s)	223, 367
SmoI	CTYRAG	2 cut(s)	223, 367
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	7 cut(s)	22, 82, 115, 251, 498, 504, 835
SsiI	CCGC	2 cut(s)	803, 840
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	439, 673
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	2 cut(s)	310, 316
TasI	AATT	7 cut(s)	22, 82, 115, 251, 498, 504, 835
TauI	GCSGC	1 cut(s)	843
Tru1I	TTAA	4 cut(s)	129, 224, 362, 503
Tru9I	TTAA	4 cut(s)	129, 224, 362, 503
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	5 cut(s)	77, 162, 264, 312, 763
Vha464I	CTTAAG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	669
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	278, 568
XmaJI	CCTAGG	1 cut(s)	701
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.