Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

2590820 .. 2593396

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1029500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGACAGATCCCTACCCTAATTACTTCAATAATGGTTGGTTTAGTATCAACCCTCACCACCACTTCTCTTCCACCTCCACACCTTCCTCTATTAATCCATATAATTATCACCCTCCTAATTATGGAGATTACTACAATTTCTGCTCATCAAACAACTTGATCAACAATATTAACAATACCCTTTTCACTAATCACCACCACCAATGTTCATCACCTCCCTCTCCTCCTCTACGAGAAGCCCTTCCCCTCCTCAGCCAAAGCCCTTCAAGAAGTCAGCACCATGAAGAAATGCAAGAATCAGCTGCTGATGATGATCATCAGAACTTCTTGATCTCTTCTAGGTCTGATGATATTGTTGATCATGAAGAAGAAGATGATGAAAATGTTACTGTGGCTTTACATTTAGGGCTTCCAAGCAGAGCCCTATCTTCAGCTGATTTAATCTCCAGGCTTCCTTCCCCAGAAATCTCATCAGATAAAGAAGCAGATGTTACTGTTGCTTCAGCCGGGTATGCACCAAACAGGCTCAACAAAGGACAGTACTGGATCCCTACTCCTGCTCAAATTTTAATTGGTCCAACCCAGTTCTCATGCCCTCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCAGAATCTCTAAGGGGAACACAACCAACAGCCATGCTTAGACTGCCTTGCTATTGCTGTGCCCCAGGCTGCAGAAACAATATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTACAAACCCACTACAAGAGAAAACATGGGATCAAACCCTTCATGTGTAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGTGATTGGAGAACTCATGAAAAAAATTGTGGGAAGCTTTGGTATTGCACTTGTGGGTCTGATTTCAAGCACAAGAGGTCCCTCAAAGATCATATCAAGGCATTTGGACAAGGTCATGCAGCTTATGGAATTGACTGTTTTGAAGAGGAAGATGATGCAGCTTCTGAAATTGAGGAAAACGACTCCTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

357

Amino Acids

40.49

Weight (kDa)

6.5

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	242 - 276	4e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	279 - 303	7.1e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	2, 541, 554, 664, 836
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	3 cut(s)	414, 486, 775
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	122, 769
AgsI	TTSAA	6 cut(s)	28, 267, 607, 616, 943, 1019
AjnI	CCWGG	2 cut(s)	446, 739
AluBI	AGCT	5 cut(s)	302, 434, 913, 998, 1037
AluI	AGCT	5 cut(s)	302, 434, 913, 998, 1037
AlwI	GGATC	5 cut(s)	2, 541, 554, 664, 836
AlwNI	CAGNNNCTG	2 cut(s)	305, 1040
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	4 cut(s)	302, 744, 995, 1034
ApoI	RAATTY	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	575, 674, 954
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	5 cut(s)	47, 101, 185, 204, 890
AvaII	GGWCC	2 cut(s)	575, 954
BaeGI	GKGCMC	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	424
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	4 cut(s)	289, 731, 1007, 1046
BccI	CCATC	1 cut(s)	771
BciT130I	CCWGG	2 cut(s)	448, 741
BclI	TGATCA	3 cut(s)	159, 313, 358
BcnI	CCSGG	1 cut(s)	508
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	745
BisI	GCNGC	4 cut(s)	303, 745, 996, 1035
BlsI	GCNGC	4 cut(s)	304, 746, 997, 1036
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	3 cut(s)	448, 508, 741
Bme18I	GGWCC	2 cut(s)	575, 954
BmgT120I	GGNCC	3 cut(s)	575, 674, 954
BmiI	GGNNCC	2 cut(s)	548, 956
BmrFI	CCNGG	3 cut(s)	448, 508, 741
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	627, 1021
BmuI	ACTGGG	1 cut(s)	577
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	508
BsaBI	GATNNNNATC	2 cut(s)	312, 315
BsaJI	CCNNGG	2 cut(s)	739, 767
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 769
Bse1I	ACTGG	2 cut(s)	548, 583
Bse8I	GATNNNNATC	2 cut(s)	312, 315
BseBI	CCWGG	2 cut(s)	448, 741
BseDI	CCNNGG	2 cut(s)	739, 767
BseGI	GGATG	1 cut(s)	763
BseJI	GATNNNNATC	2 cut(s)	312, 315
BseLI	CCNNNNNNNGG	2 cut(s)	122, 769
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	548, 583
BseRI	GAGGAG	3 cut(s)	213, 216, 239
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	4 cut(s)	289, 731, 1007, 1046
BshFI	GGCC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	2 cut(s)	122, 769
BsmFI	GGGAC	1 cut(s)	940
BsnI	GGCC	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	424, 739
Bsp143I	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	1 cut(s)	264
BspHI	TCATGA	2 cut(s)	361, 892
BspLI	GGNNCC	2 cut(s)	548, 956
BspMAI	CTGCAG	1 cut(s)	749
BspPI	GGATC	5 cut(s)	2, 541, 554, 664, 836
BsrI	ACTGG	2 cut(s)	548, 583
BssECI	CCNNGG	2 cut(s)	739, 767
BssMI	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	448, 741
Bst4CI	ACNGT	4 cut(s)	391, 496, 540, 1013
Bst6I	CTCTTC	3 cut(s)	73, 340, 1014
BstDEI	CTNAG	3 cut(s)	251, 686, 713
BstF5I	GGATG	1 cut(s)	763
BstKTI	GATC	9 cut(s)	10, 162, 316, 333, 361, 549, 659, 831, 967
BstMBI	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 600, 718
BstNI	CCWGG	2 cut(s)	448, 741
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	3 cut(s)	446, 506, 739
BstSFI	CTRYAG	1 cut(s)	745
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	4 cut(s)	289, 731, 1007, 1046
BstX2I	RGATCY	3 cut(s)	7, 546, 656
BstYI	RGATCY	3 cut(s)	7, 546, 656
BsuRI	GGCC	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	763
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	1 cut(s)	876
CaiI	CAGNNNCTG	2 cut(s)	305, 1040
CciI	TCATGA	2 cut(s)	361, 892
Cfr13I	GGNCC	3 cut(s)	575, 674, 954
Csp6I	GTAC	1 cut(s)	541
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	251, 686, 713
DpnI	GATC	9 cut(s)	9, 161, 315, 332, 360, 548, 658, 830, 966
DpnII	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
Eam1104I	CTCTTC	3 cut(s)	73, 340, 1014
EarI	CTCTTC	3 cut(s)	73, 340, 1014
Eco130I	CCWWGG	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	575, 954
Eco57I	CTGAAG	3 cut(s)	414, 486, 775
EcoO109I	RGGNCCY	1 cut(s)	954
EcoRII	CCWGG	2 cut(s)	446, 739
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	767
FaqI	GGGAC	1 cut(s)	940
FauNDI	CATATG	1 cut(s)	642
FbaI	TGATCA	3 cut(s)	159, 313, 358
Fnu4HI	GCNGC	4 cut(s)	303, 745, 996, 1035
FokI	GGATG	1 cut(s)	750
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	4 cut(s)	303, 745, 996, 1035
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	4 cut(s)	303, 745, 996, 1035
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	3 cut(s)	296, 680, 1058
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	5 cut(s)	47, 101, 185, 204, 890
Hpy188I	TCNGA	6 cut(s)	321, 346, 475, 794, 937, 1042
Hpy188III	TCNNGA	5 cut(s)	267, 328, 362, 607, 893
HpyAV	CCTTC	6 cut(s)	93, 251, 273, 465, 622, 847
HpyCH4III	ACNGT	4 cut(s)	391, 496, 540, 1013
HpyCH4V	TGCA	9 cut(s)	292, 515, 634, 640, 747, 869, 924, 995, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 600, 718
HpyF3I	CTNAG	3 cut(s)	251, 686, 713
Ksp22I	TGATCA	3 cut(s)	159, 313, 358
Kzo9I	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
Lsp1109I	GCAGC	4 cut(s)	289, 731, 1007, 1046
LweI	GCATC	2 cut(s)	627, 1021
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	385, 490
MalI	GATC	9 cut(s)	9, 161, 315, 332, 360, 548, 658, 830, 966
MboI	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
MboII	GAAGA	9 cut(s)	60, 296, 327, 377, 380, 383, 420, 1031, 1037
MflI	RGATCY	3 cut(s)	7, 546, 656
MhlI	GDGCHC	2 cut(s)	424, 739
MluCI	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	1 cut(s)	602
Mph1103I	ATGCAT	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	4 cut(s)	93, 171, 440, 569
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	302, 434
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	3 cut(s)	448, 508, 741
MvaI	CCWGG	2 cut(s)	448, 741
MwoI	GCNNNNNNNGC	3 cut(s)	512, 600, 718
NciI	CCSGG	1 cut(s)	508
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
NlaIV	GGNNCC	2 cut(s)	548, 956
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	1 cut(s)	634
PagI	TCATGA	2 cut(s)	361, 892
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	296, 680
PflFI	GACNNNGTC	1 cut(s)	987
PkrI	GCNGC	4 cut(s)	304, 746, 997, 1036
PleI	GAGTC	1 cut(s)	1052
PpsI	GAGTC	1 cut(s)	1052
PpuMI	RGGWCCY	1 cut(s)	954
PshBI	ATTAAT	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	446, 739
PspGI	CCWGG	2 cut(s)	446, 739
PspN4I	GGNNCC	2 cut(s)	548, 956
PspPI	GGNCC	3 cut(s)	575, 674, 954
PspPPI	RGGWCCY	1 cut(s)	954
PstI	CTGCAG	1 cut(s)	749
PstNI	CAGNNNCTG	2 cut(s)	305, 1040
PsuI	RGATCY	3 cut(s)	7, 546, 656
PsyI	GACNNNGTC	1 cut(s)	987
PvuII	CAGCTG	2 cut(s)	302, 434
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	4 cut(s)	93, 171, 440, 569
SatI	GCNGC	4 cut(s)	303, 745, 996, 1035
Sau3AI	GATC	9 cut(s)	7, 159, 313, 330, 358, 546, 656, 828, 964
Sau96I	GGNCC	3 cut(s)	575, 674, 954
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	3 cut(s)	448, 508, 741
SduI	GDGCHC	2 cut(s)	424, 739
SfaNI	GCATC	2 cut(s)	627, 1021
SfcI	CTRYAG	1 cut(s)	745
SinI	GGWCC	2 cut(s)	575, 954
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
SspI	AATATT	2 cut(s)	169, 757
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	446, 506, 739
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	4 cut(s)	391, 496, 540, 1013
TasI	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	296, 680
Tru1I	TTAA	4 cut(s)	93, 171, 440, 569
Tru9I	TTAA	4 cut(s)	93, 171, 440, 569
TscAI	CASTG	1 cut(s)	876
TseI	GCWGC	4 cut(s)	302, 744, 995, 1034
TspDTI	ATGAA	6 cut(s)	198, 297, 378, 393, 829, 909
TspRI	CASTG	1 cut(s)	876
Tth111I	GACNNNGTC	1 cut(s)	987
VpaK11BI	GGWCC	2 cut(s)	575, 954
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.