Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8441611.1

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Forward (+)

422 .. 997

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8441611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgacagatccctacccatctaattacttcaatggttggttcaatctcaacttctctccccccacaccttctcttgcctataattttcatcatcatcatcaagctcctttctcaaattataacatgattaacaacaatagcaatagctttttcagtagccatcaccaatcttcatcatcacctccctctcctcctttgaaagaagcccttcctctactcagcttaagccctaaaagagatcatcaagatgaattagctgaggatcatgatcagcatgctgatgataatgatgatgatgaagaggaaactgttactgtggctttgcatttagggctaccaaaccctacctctgctgctgatttaatctcaaggctctcctcctcagagatctcatctgcagatagagaagatgcagtcactactcctaatgcttcttcacctgggtatgtctcaaacagactcaacaagggccagtattggatcccaacaccttctcaaattttaattggtccaacccagttctcttgccccctttgcttcaagaccttcaacagatacaataacatgcaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

5.02

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	559
AclWI	GGATC	4 cut(s)	2, 270, 475, 488
AcsI	RAATTY	1 cut(s)	498
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	31, 43, 199, 541, 550
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	4 cut(s)	104, 147, 222, 257
AluI	AGCT	4 cut(s)	104, 147, 222, 257
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	4 cut(s)	2, 270, 475, 488
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	469, 509
AsuHPI	GGTGA	3 cut(s)	155, 171, 429
AvaII	GGWCC	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	25, 168
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	469, 509
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	511
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	472, 517
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	440
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	232, 249, 396
BseNI	ACTGG	2 cut(s)	472, 517
BseRI	GAGGAG	3 cut(s)	180, 367, 370
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	471
Bsp143I	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	3 cut(s)	231, 250, 395
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	482
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	4 cut(s)	2, 270, 475, 488
BspTI	CTTAAG	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	472, 517
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	310, 316
Bst6I	CTCTTC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	218, 258, 382
BstKTI	GATC	6 cut(s)	10, 241, 265, 271, 390, 483
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 534
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	2 cut(s)	278, 568
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	3 cut(s)	7, 387, 480
BstYI	RGATCY	3 cut(s)	7, 387, 480
BsuRI	GGCC	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	469, 509
CviAII	CATG	4 cut(s)	124, 266, 275, 565
DdeI	CTNAG	3 cut(s)	218, 258, 382
DpnI	GATC	6 cut(s)	9, 240, 264, 270, 389, 482
DpnII	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	439
FaeI	CATG	4 cut(s)	127, 269, 278, 568
FaiI	YATR	8 cut(s)	81, 120, 125, 267, 276, 447, 566, 574
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	4 cut(s)	123, 265, 274, 564
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	127, 269, 278, 568
HinfI	GANTC	1 cut(s)	459
HphI	GGTGA	3 cut(s)	155, 171, 429
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	3 cut(s)	245, 266, 541
HpyAV	CCTTC	4 cut(s)	78, 218, 501, 556
HpyCH4III	ACNGT	2 cut(s)	310, 316
HpyCH4V	TGCA	4 cut(s)	325, 398, 413, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 534
HpyF3I	CTNAG	3 cut(s)	218, 258, 382
Hsp92II	CATG	4 cut(s)	127, 269, 278, 568
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	426, 453, 485, 530, 554
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	310, 415
MalI	GATC	6 cut(s)	9, 240, 264, 270, 389, 482
MboI	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
MboII	GAAGA	4 cut(s)	162, 311, 419, 426
MflI	RGATCY	3 cut(s)	7, 387, 480
MluCI	AATT	6 cut(s)	22, 82, 115, 251, 498, 504
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	9 cut(s)	192, 196, 201, 222, 253, 295, 358, 388, 391
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	4 cut(s)	129, 224, 362, 503
MslI	CAYNNNNRTG	2 cut(s)	246, 279
MspCI	CTTAAG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	331, 534
NdeII	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
NlaIII	CATG	4 cut(s)	127, 269, 278, 568
NlaIV	GGNNCC	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	278, 568
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	469, 509
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	7, 387, 480
RseI	CAYNNNNRTG	2 cut(s)	246, 279
SaqAI	TTAA	4 cut(s)	129, 224, 362, 503
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	6 cut(s)	7, 238, 262, 268, 387, 480
Sau96I	GGNCC	2 cut(s)	469, 509
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	441
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	246, 279
SmlI	CTYRAG	2 cut(s)	223, 367
SmoI	CTYRAG	2 cut(s)	223, 367
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	6 cut(s)	22, 82, 115, 251, 498, 504
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	310, 316
TasI	AATT	6 cut(s)	22, 82, 115, 251, 498, 504
Tru1I	TTAA	4 cut(s)	129, 224, 362, 503
Tru9I	TTAA	4 cut(s)	129, 224, 362, 503
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	77, 162, 264, 312
Vha464I	CTTAAG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	278, 568
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.