Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

1905931 .. 1908706

Gene Structure 2776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACAGATCCCTACTCTAATTACTTCAATAATGGCTGGTTCAATCTCAACCCTCTCCACCACCTCTCCTCCCCCCCCACACCTTCTTCTATTAATCCATATAATTTCCATGCTCCTCCTAATTATAGAGACTGCAACAATTTTTGCTCATCAAATAACTTGATGGTGCACAATCAAAGCTTTTTCATTAATCACCACCAGTCTTCTTCTTCATCATCATCACCTCCCTCACCTCCTCTAAGAGAAGCCCTTCCCCTCCTCAGCCTAAGCCCTTCAAGACACCATCATCCTCATGAAGACTTGCAAGAACCCTCTTTCAATGCCATGGAAGCTGATCATCAAAACAACAACAACAACAGTAGAAAAGACTCAGCTGATCAACAAAGCTTGGTCGTCTCCAGCTCTGCTGATATTGTTGATCAAGATGAAAATGATGAAACTGTTACTGTGGCTTTACATTTAGGGCTTCCAAGCAGGACCCTATCAACTGATTTGATCTCTAGGCTCTCTTCCCCAGAAATCTCATCAGATAAAGAAGTAGTAGATGTGACTGTTGCTTCAGCTGGGTATGCCCCAAACAGACTCAACAAGGGTCAGTATTGGATCCCTACTCCTACTCAGATTTTAATTGGTCCAACCCAGTTCTCATGCCCTCTTTGCTTCAAGACGTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCAGAGTCTCTAAGAGGAACACAGCCAACAGCCATGCTTAGACTGCCTTGCTATTGCTGTGCACCAGGTTGCAGAAACAACATTGACCATCCAAGGTCAAAGCCTCTCAAAGACTTCAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGGATCAAGCCTTTCATGTGTAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGTGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCACTTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTCAAAGATCATATCAAGGCATTTGGACATGGCCATGCAGCTTATGGCATTGACTGTTTTGAAGAAGATGATGATGCAGCCTCTGAAATTGAGGAAAATTACTCTTCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

376

Amino Acids

42.39

Weight (kDa)

7.31

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	2, 598, 611, 721, 893
AcoI	YGGCCR	1 cut(s)	1045
AcuI	CTGAAG	2 cut(s)	543, 832
AgsI	TTSAA	8 cut(s)	28, 43, 276, 319, 664, 673, 1000, 1076
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	8 cut(s)	180, 332, 374, 387, 402, 563, 970, 1055
AluI	AGCT	8 cut(s)	180, 332, 374, 387, 402, 563, 970, 1055
Alw21I	GWGCWC	2 cut(s)	171, 796
Alw26I	GTCTC	4 cut(s)	123, 400, 744, 1017
Alw44I	GTGCAC	2 cut(s)	167, 792
AlwI	GGATC	5 cut(s)	2, 598, 611, 721, 893
AlwNI	CAGNNNCTG	1 cut(s)	1097
AoxI	GGCC	2 cut(s)	731, 1045
ApaLI	GTGCAC	2 cut(s)	167, 792
ApeKI	GCWGC	2 cut(s)	1052, 1091
AseI	ATTAAT	2 cut(s)	93, 189
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	3 cut(s)	477, 632, 731
AsuHPI	GGTGA	4 cut(s)	185, 213, 222, 947
AvaII	GGWCC	2 cut(s)	477, 632
BaeGI	GKGCMC	2 cut(s)	171, 796
BalI	TGGCCA	1 cut(s)	1047
BamHI	GGATCC	1 cut(s)	603
BbsI	GAAGAC	2 cut(s)	195, 303
Bbv12I	GWGCWC	2 cut(s)	171, 796
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	1064, 1103
BccI	CCATC	3 cut(s)	157, 291, 828
BciT130I	CCWGG	1 cut(s)	798
BclI	TGATCA	3 cut(s)	334, 376, 418
BcoDI	GTCTC	4 cut(s)	123, 400, 744, 1017
BfaI	CTAG	1 cut(s)	501
BisI	GCNGC	2 cut(s)	1053, 1092
BlsI	GCNGC	2 cut(s)	1054, 1093
Bme1390I	CCNGG	1 cut(s)	798
Bme18I	GGWCC	2 cut(s)	477, 632
BmgT120I	GGNCC	3 cut(s)	477, 632, 731
BmiI	GGNNCC	2 cut(s)	479, 605
BmrFI	CCNGG	1 cut(s)	798
BmrI	ACTGGG	2 cut(s)	634, 1117
BmsI	GCATC	2 cut(s)	684, 1078
BmuI	ACTGGG	2 cut(s)	634, 1117
BpiI	GAAGAC	2 cut(s)	195, 303
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	2 cut(s)	260, 266
BsaI	GGTCTC	1 cut(s)	1017
BsaJI	CCNNGG	2 cut(s)	324, 824
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 53, 80, 83
Bse1I	ACTGG	3 cut(s)	199, 640, 1123
BseBI	CCWGG	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	324, 824
BseGI	GGATG	2 cut(s)	286, 820
BseMII	CTCAG	3 cut(s)	274, 384, 632
BseNI	ACTGG	3 cut(s)	199, 640, 1123
BseRI	GAGGAG	4 cut(s)	58, 105, 225, 248
BseSI	GKGCMC	2 cut(s)	171, 796
BseXI	GCAGC	2 cut(s)	1064, 1103
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	2 cut(s)	733, 1047
BsiHKAI	GWGCWC	2 cut(s)	171, 796
BsmAI	GTCTC	4 cut(s)	123, 400, 744, 1017
BsmBI	CGTCTC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	733, 1047
Bso31I	GGTCTC	1 cut(s)	1017
Bsp1286I	GDGCHC	2 cut(s)	171, 796
Bsp143I	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
Bsp19I	CCATGG	1 cut(s)	324
BspANI	GGCC	2 cut(s)	733, 1047
BspCNI	CTCAG	3 cut(s)	273, 383, 631
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	479, 605
BspPI	GGATC	5 cut(s)	2, 598, 611, 721, 893
BspTNI	GGTCTC	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	199, 640, 1123
BssECI	CCNNGG	2 cut(s)	324, 824
BssMI	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
BssT1I	CCWWGG	2 cut(s)	324, 824
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	5 cut(s)	359, 442, 448, 553, 1070
Bst6I	CTCTTC	2 cut(s)	514, 1123
BstC8I	GCNNGC	1 cut(s)	968
BstDEI	CTNAG	7 cut(s)	239, 260, 266, 370, 618, 743, 770
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	286, 820
BstKTI	GATC	9 cut(s)	10, 337, 379, 421, 498, 606, 716, 888, 1024
BstMAI	GTCTC	4 cut(s)	123, 400, 744, 1017
BstMBI	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 569, 657, 775, 987
BstNI	CCWGG	1 cut(s)	798
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	796
BstSLI	GKGCMC	2 cut(s)	171, 796
BstV1I	GCAGC	2 cut(s)	1064, 1103
BstV2I	GAAGAC	2 cut(s)	195, 303
BstX2I	RGATCY	3 cut(s)	7, 603, 713
BstYI	RGATCY	3 cut(s)	7, 603, 713
BsuRI	GGCC	2 cut(s)	733, 1047
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	286, 820
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	1 cut(s)	933
Cac8I	GCNNGC	1 cut(s)	968
CaiI	CAGNNNCTG	1 cut(s)	1097
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	477, 632, 731
CsiI	ACCWGGT	1 cut(s)	796
DdeI	CTNAG	7 cut(s)	239, 260, 266, 370, 618, 743, 770
DpnI	GATC	9 cut(s)	9, 336, 378, 420, 497, 605, 715, 887, 1023
DpnII	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	514, 1123
EarI	CTCTTC	2 cut(s)	514, 1123
Eco130I	CCWWGG	2 cut(s)	324, 824
Eco31I	GGTCTC	1 cut(s)	1017
Eco47I	GGWCC	2 cut(s)	477, 632
Eco57I	CTGAAG	2 cut(s)	543, 832
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	796
EcoT14I	CCWWGG	2 cut(s)	324, 824
EcoT22I	ATGCAT	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	324, 824
Esp3I	CGTCTC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	699
FbaI	TGATCA	3 cut(s)	334, 376, 418
Fnu4HI	GCNGC	2 cut(s)	1053, 1092
FokI	GGATG	2 cut(s)	273, 807
Fsp4HI	GCNGC	2 cut(s)	1053, 1092
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	1053, 1092
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	733, 1047
HindIII	AAGCTT	3 cut(s)	178, 385, 968
HinfI	GANTC	3 cut(s)	368, 582, 737
HphI	GGTGA	4 cut(s)	185, 213, 222, 947
Hpy166II	GTNNAC	2 cut(s)	169, 794
Hpy188I	TCNGA	5 cut(s)	529, 621, 851, 994, 1099
Hpy188III	TCNNGA	4 cut(s)	276, 293, 422, 664
Hpy8I	GTNNAC	2 cut(s)	169, 794
HpyAV	CCTTC	3 cut(s)	93, 260, 282
HpyCH4III	ACNGT	5 cut(s)	359, 442, 448, 553, 1070
HpyCH4IV	ACGT	1 cut(s)	668
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 569, 657, 775, 987
HpyF3I	CTNAG	7 cut(s)	239, 260, 266, 370, 618, 743, 770
HpySE526I	ACGT	1 cut(s)	668
Ksp22I	TGATCA	3 cut(s)	334, 376, 418
Kzo9I	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	2 cut(s)	1064, 1103
LweI	GCATC	2 cut(s)	684, 1078
MabI	ACCWGGT	1 cut(s)	796
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	2 cut(s)	442, 547
MalI	GATC	9 cut(s)	9, 336, 378, 420, 497, 605, 715, 887, 1023
MboI	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
MflI	RGATCY	3 cut(s)	7, 603, 713
MhlI	GDGCHC	2 cut(s)	171, 796
MlsI	TGGCCA	1 cut(s)	1047
MluCI	AATT	8 cut(s)	19, 103, 121, 139, 627, 958, 1101, 1111
MluNI	TGGCCA	1 cut(s)	1047
MlyI	GAGTC	3 cut(s)	362, 576, 746
MmeI	TCCRAC	1 cut(s)	659
Mox20I	TGGCCA	1 cut(s)	1047
Mph1103I	ATGCAT	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	1047
MseI	TTAA	3 cut(s)	93, 189, 626
MslI	CAYNNNNRTG	3 cut(s)	291, 692, 1047
Msp20I	TGGCCA	1 cut(s)	1047
MspA1I	CMGCKG	2 cut(s)	374, 563
MspR9I	CCNGG	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	798
MwoI	GCNNNNNNNGC	5 cut(s)	329, 569, 657, 775, 987
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	699
NdeII	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
NlaIV	GGNNCC	2 cut(s)	479, 605
NmuCI	GTSAC	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	699
NspI	RCATGY	1 cut(s)	691
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	1054, 1093
PleI	GAGTC	3 cut(s)	362, 576, 745
PpsI	GAGTC	3 cut(s)	362, 576, 745
PpuMI	RGGWCCY	1 cut(s)	477
PshBI	ATTAAT	2 cut(s)	93, 189
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	796
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	2 cut(s)	479, 605
PspPI	GGNCC	3 cut(s)	477, 632, 731
PspPPI	RGGWCCY	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	1097
PsuI	RGATCY	3 cut(s)	7, 603, 713
PvuII	CAGCTG	2 cut(s)	374, 563
RseI	CAYNNNNRTG	3 cut(s)	291, 692, 1047
SaqAI	TTAA	3 cut(s)	93, 189, 626
SatI	GCNGC	2 cut(s)	1053, 1092
Sau3AI	GATC	9 cut(s)	7, 334, 376, 418, 495, 603, 713, 885, 1021
Sau96I	GGNCC	3 cut(s)	477, 632, 731
SchI	GAGTC	3 cut(s)	362, 576, 746
ScrFI	CCNGG	1 cut(s)	798
SduI	GDGCHC	2 cut(s)	171, 796
SexAI	ACCWGGT	1 cut(s)	796
SfaNI	GCATC	2 cut(s)	684, 1078
SinI	GGWCC	2 cut(s)	477, 632
SmiMI	CAYNNNNRTG	3 cut(s)	291, 692, 1047
Sse9I	AATT	8 cut(s)	19, 103, 121, 139, 627, 958, 1101, 1111
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	796
StyI	CCWWGG	2 cut(s)	324, 824
TaaI	ACNGT	5 cut(s)	359, 442, 448, 553, 1070
TaiI	ACGT	1 cut(s)	671
TasI	AATT	8 cut(s)	19, 103, 121, 139, 627, 958, 1101, 1111
Tru1I	TTAA	3 cut(s)	93, 189, 626
Tru9I	TTAA	3 cut(s)	93, 189, 626
TscAI	CASTG	1 cut(s)	933
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	1052, 1091
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	6 cut(s)	175, 201, 309, 441, 450, 886
TspRI	CASTG	1 cut(s)	933
VneI	GTGCAC	2 cut(s)	167, 792
VpaK11BI	GGWCC	2 cut(s)	477, 632
VspI	ATTAAT	2 cut(s)	93, 189
XceI	RCATGY	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1055
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.