Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

6806100 .. 6808621

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACAGATCCCTACCCATCTAATTACTTCAATGGTTGGTTGAATCTCAACTTCTCTCCCCCCACACCTTCTCTTGCCTATAATTTTCATCATCATCATCACCAAGCTCCTTTCTCAAATTATAACATGATTAACAACAATAGCAATAGCTTTTTCAGTAGCCATCACCAATCTTCATCATCACCTCCCTCTCCTCCTTTGAAAGAAGCCCTTCCTCTACTCAGCTTAAGCCCTGAAAGAGATCATCAAGATGAATTAGCTGAGGATCATGATCAGCATGCTGATGATAATGATGATGATGAAGAGGAAACTGTTACTGTGGCTTTGCATTTAGGGCTACCAAACCCTAGCTCTGCTGCTGATTTAATCTCAAGGCTCTCCTCCTCAGAGATCTCATCTGCAGATAGAGAAGATGGAGTCACTACTCCTAATGCTTCTTCACCTGGGTATGTCTCAAACAGACTCAACAAGGGCCAGTATTGGATCCCAACACCTTCTCAAATTTTAATTGGTCCAACCCAGTTCTCTTGTCCCCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCAGAGTCCCTAAGAGGAACCCAACCAACCGCCATGCTTAGACTCCCTTGCTATTGCTGTGCACCAGGTTGCAGGAACAACATTGACCATCCTAGGTCAAAGCCTCTCAAAGACTTCAGAACCCTCCAAACCCATTACAAGAGAAAACATGGGATCAAGCCTTTCATGTGTAGGAAATGTGGCAAGGCGTTTGCTGTGAGAGGTGATTGGAGAACCCATGAGAAGAATTGCGGCAAGCTTTGGTACTGCACTTGTGGCTCGGATTTCAAGCACAAGAGGTCTCTCAAGGATCATATCAAGGCTTTTGGACAAGGCCATGCAGCTTATGGCATTGATTGTTTTGAAGAAGAAGAAGAAGATGATGATGCAGCCTCTGAAATTGAGGAAAATGACTCTTGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

338

Amino Acids

38.26

Weight (kDa)

6.11

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	221 - 255	1e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	258 - 282	6.6e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
AciI	CCGC	2 cut(s)	642, 843
AclWI	GGATC	7 cut(s)	2, 273, 478, 491, 601, 773, 909
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	712
AfaI	GTAC	1 cut(s)	857
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	31, 43, 202, 544, 553, 880, 956
AjnI	CCWGG	2 cut(s)	442, 676
AluBI	AGCT	7 cut(s)	107, 150, 225, 260, 351, 850, 935
AluI	AGCT	7 cut(s)	107, 150, 225, 260, 351, 850, 935
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	2 cut(s)	457, 897
Alw44I	GTGCAC	1 cut(s)	672
AlwI	GGATC	7 cut(s)	2, 273, 478, 491, 601, 773, 909
AlwNI	CAGNNNCTG	1 cut(s)	986
AoxI	GGCC	3 cut(s)	472, 611, 925
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	3 cut(s)	356, 932, 980
ApoI	RAATTY	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	210
AspA2I	CCTAGG	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	472, 512, 611
AsuHPI	GGTGA	5 cut(s)	92, 158, 174, 432, 827
AvaII	GGWCC	1 cut(s)	512
AvrII	CCTAGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	676
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	343, 944, 992
BccI	CCATC	4 cut(s)	25, 171, 407, 708
BciT130I	CCWGG	2 cut(s)	444, 678
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	457, 897
BfaI	CTAG	2 cut(s)	348, 705
BfmI	CTRYAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	226
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	4 cut(s)	357, 844, 933, 981
BlnI	CCTAGG	1 cut(s)	704
BlsI	GCNGC	4 cut(s)	358, 845, 934, 982
Bme1390I	CCNGG	2 cut(s)	444, 678
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	472, 512, 611
BmiI	GGNNCC	2 cut(s)	485, 631
BmrFI	CCNGG	2 cut(s)	444, 678
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	564, 967
BmuI	ACTGGG	1 cut(s)	514
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	355, 881
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	443, 704
Bse1I	ACTGG	2 cut(s)	475, 520
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	444, 678
BseDI	CCNNGG	2 cut(s)	443, 704
BseGI	GGATG	1 cut(s)	700
BseJI	GATNNNNATC	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	235, 252, 399
BseNI	ACTGG	2 cut(s)	475, 520
BseRI	GAGGAG	3 cut(s)	183, 370, 373
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	3 cut(s)	343, 944, 992
BsgI	GTGCAG	1 cut(s)	844
BshFI	GGCC	3 cut(s)	474, 613, 927
BsiHKAI	GWGCWC	1 cut(s)	676
BslFI	GGGAC	2 cut(s)	516, 604
BsmAI	GTCTC	2 cut(s)	457, 897
BsmFI	GGGAC	2 cut(s)	516, 604
BsnI	GGCC	3 cut(s)	474, 613, 927
Bso31I	GGTCTC	1 cut(s)	897
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
BspACI	CCGC	2 cut(s)	642, 843
BspANI	GGCC	3 cut(s)	474, 613, 927
BspCNI	CTCAG	3 cut(s)	234, 253, 398
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	485, 631
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	7 cut(s)	2, 273, 478, 491, 601, 773, 909
BspTI	CTTAAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	897
BsrI	ACTGG	2 cut(s)	475, 520
BssECI	CCNNGG	2 cut(s)	443, 704
BssMI	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
BssT1I	CCWWGG	1 cut(s)	704
Bst2UI	CCWGG	2 cut(s)	444, 678
Bst4CI	ACNGT	2 cut(s)	313, 319
Bst6I	CTCTTC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	279, 848
BstDEI	CTNAG	5 cut(s)	221, 261, 385, 623, 650
BstF5I	GGATG	1 cut(s)	700
BstKTI	GATC	9 cut(s)	10, 244, 268, 274, 393, 486, 596, 768, 904
BstMAI	GTCTC	2 cut(s)	457, 897
BstMBI	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 867
BstNI	CCWGG	2 cut(s)	444, 678
BstNSI	RCATGY	2 cut(s)	281, 571
BstSCI	CCNGG	2 cut(s)	442, 676
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	676
BstV1I	GCAGC	3 cut(s)	343, 944, 992
BstX2I	RGATCY	4 cut(s)	7, 390, 483, 593
BstYI	RGATCY	4 cut(s)	7, 390, 483, 593
BsuRI	GGCC	3 cut(s)	474, 613, 927
BtsCI	GGATG	1 cut(s)	700
Cac8I	GCNNGC	2 cut(s)	279, 848
CaiI	CAGNNNCTG	1 cut(s)	986
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	472, 512, 611
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	856
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	5 cut(s)	221, 261, 385, 623, 650
DpnI	GATC	9 cut(s)	9, 243, 267, 273, 392, 485, 595, 767, 903
DpnII	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	704
Eco31I	GGTCTC	1 cut(s)	897
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	442, 676
EcoT14I	CCWWGG	1 cut(s)	704
EcoT22I	ATGCAT	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	704
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	2 cut(s)	516, 604
FauNDI	CATATG	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	357, 844, 933, 981
FokI	GGATG	1 cut(s)	687
Fsp4HI	GCNGC	4 cut(s)	357, 844, 933, 981
FspBI	CTAG	2 cut(s)	348, 705
GluI	GCNGC	4 cut(s)	357, 844, 933, 981
HaeIII	GGCC	3 cut(s)	474, 613, 927
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	6 cut(s)	43, 417, 462, 617, 654, 1004
HphI	GGTGA	5 cut(s)	92, 158, 174, 432, 827
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	4 cut(s)	388, 731, 874, 988
Hpy188III	TCNNGA	3 cut(s)	248, 269, 544
Hpy8I	GTNNAC	1 cut(s)	674
HpyAV	CCTTC	4 cut(s)	78, 221, 504, 559
HpyCH4III	ACNGT	2 cut(s)	313, 319
HpyCH4V	TGCA	9 cut(s)	328, 401, 571, 577, 674, 684, 861, 932, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 867
HpyF3I	CTNAG	5 cut(s)	221, 261, 385, 623, 650
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	246, 429, 456, 488, 533, 627, 663, 670, 690
Lsp1109I	GCAGC	3 cut(s)	343, 944, 992
LweI	GCATC	2 cut(s)	564, 967
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	2 cut(s)	348, 705
MaeIII	GTNAC	2 cut(s)	313, 418
MalI	GATC	9 cut(s)	9, 243, 267, 273, 392, 485, 595, 767, 903
MboI	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
MflI	RGATCY	4 cut(s)	7, 390, 483, 593
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	8 cut(s)	22, 82, 118, 254, 501, 507, 838, 990
MlyI	GAGTC	5 cut(s)	426, 456, 626, 648, 998
MmeI	TCCRAC	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	4 cut(s)	132, 227, 365, 506
MslI	CAYNNNNRTG	3 cut(s)	249, 282, 572
MspCI	CTTAAG	1 cut(s)	226
MspR9I	CCNGG	2 cut(s)	444, 678
MvaI	CCWGG	2 cut(s)	444, 678
MwoI	GCNNNNNNNGC	2 cut(s)	334, 867
NdeI	CATATG	1 cut(s)	579
NdeII	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
NlaIV	GGNNCC	2 cut(s)	485, 631
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	2 cut(s)	281, 571
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	358, 845, 934, 982
PleI	GAGTC	5 cut(s)	425, 456, 625, 648, 998
PpsI	GAGTC	5 cut(s)	425, 456, 625, 648, 998
PsiI	TTATAA	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	442, 676
PspGI	CCWGG	2 cut(s)	442, 676
PspN4I	GGNNCC	2 cut(s)	485, 631
PspPI	GGNCC	3 cut(s)	472, 512, 611
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	986
PsuI	RGATCY	4 cut(s)	7, 390, 483, 593
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
RseI	CAYNNNNRTG	3 cut(s)	249, 282, 572
SaqAI	TTAA	4 cut(s)	132, 227, 365, 506
SatI	GCNGC	4 cut(s)	357, 844, 933, 981
Sau3AI	GATC	9 cut(s)	7, 241, 265, 271, 390, 483, 593, 765, 901
Sau96I	GGNCC	3 cut(s)	472, 512, 611
SchI	GAGTC	5 cut(s)	426, 456, 626, 648, 998
ScrFI	CCNGG	2 cut(s)	444, 678
SduI	GDGCHC	1 cut(s)	676
SexAI	ACCWGGT	1 cut(s)	676
SfaNI	GCATC	2 cut(s)	564, 967
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	3 cut(s)	249, 282, 572
SmlI	CTYRAG	3 cut(s)	226, 370, 896
SmoI	CTYRAG	3 cut(s)	226, 370, 896
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	8 cut(s)	22, 82, 118, 254, 501, 507, 838, 990
SsiI	CCGC	2 cut(s)	642, 843
SspMI	CTAG	2 cut(s)	348, 705
StyD4I	CCNGG	2 cut(s)	442, 676
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	2 cut(s)	313, 319
TasI	AATT	8 cut(s)	22, 82, 118, 254, 501, 507, 838, 990
TauI	GCSGC	1 cut(s)	846
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	4 cut(s)	132, 227, 365, 506
Tru9I	TTAA	4 cut(s)	132, 227, 365, 506
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	3 cut(s)	356, 932, 980
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	5 cut(s)	77, 165, 267, 315, 766
Vha464I	CTTAAG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	672
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	2 cut(s)	281, 571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	935
XmaJI	CCTAGG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	2 cut(s)	348, 705
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.