Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011686

Physical Location & Seq

Genomic Coordinates Reverse (-)

1997162 .. 1999782

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGACAGATCCCTACCCTAATTACTTCAATAATGGTTGGTTTAGTATCAACCCTCACCACCACTTCTCTTCCACCTCCACACCTTCCTCTATTAATCCATATAATTATCACCCTCCTAATTATGGAGATTACTACAATTTCTGCTCATCAAACAACTTGATCAACCGAATATTAACAATACCCTTTTCACTAATCACCACCACCAATGTTCATCACCTCCCTCTCCTCCTCTACGAGAAGCCCTTCCCCTCCTCAGCCAAAGCCCTTCAAGAAGTCACCACCATGAAGACATGCAAGAATCAGCTGCTGATGATGATCGATCATAACTTCTTGATCTCTTCTAGGTCTGATGATATTGTTCATGAAGAAGAAGATGATGAAAATGTTACTGTGGCTTTACATTTAGGGCTTCCAAGCAGAACCCTATCTTCAGCTGATTTAATCTCCAGGCTTCCATCCCCAGAAATCTCATCAGATAAAGAAGCAGATGTTACAGTTGCTTCAGCTGGTTATGCATCAAACAGGCTCAACAAAGGACAGTACTGGATCCCTACTCCTGCTCAAATTTTAATTGGTCCAACCCAGTTCTCATGCCCTCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCAGAATCTCTAAGGGGAACACAACCAACAGCCATGCTTAGACTGCCTTGCTATTGCTGTGCCCCTGGCTGCAGAAACAACATTGAACATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTACAAACCCCCTACAACAGAAAACATGGGATCAAACCCTTCATGTGTAGAAAATGTGGCAAGGCTTTTGCAGTGAGAGGTGATTGGAGAACTCATGAAAAAAATTGTGGGAAGCTTTGGTATTGCACTTGTGGGTCTGATTTCAAGCACAAGAGGTCCCTCAAAGATCATATCAAGGCATTTGGACAAGGCCATGCAGCTTATGGAATTGACTGTTTTGAAGAGGAAGATGATGCAGCTTCTGAAATTGAGGAAAATGACTCCTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140110 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

357

Amino Acids

40.57

Weight (kDa)

7.91

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	242 - 276	9.4e-16	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	279 - 303	7.1e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51220
fragaria_vesca	FvH4_3g43040
malus_domestica	MD03G1024400.v1.1 MD11G1029500.v1.1
prunus_persica	Prupe.6G023800_v2.0.a1
pyrus_communis	pycom03g02120 pycom11g02300
rosa_chinensis	RchiOBHm_Chr5g0077101
rosa_laevigata	RLG00000036664
rosa_multiflora	Rmu_co8441611.1_g000001 Rmu_sc0009061.1_g000001 Rmu_sc0033891.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005010
rosa_rugosa	Rorug05G0451600
rosa_samantha	Rh5AG505900 Rh5BG527800 Rh5CG552100 Rh5DG540100
rosa_wichuraiana	Rw5G047060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	2, 541, 554, 664, 836
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	3 cut(s)	414, 486, 775
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	7 cut(s)	28, 269, 607, 616, 761, 943, 1019
AjnI	CCWGG	2 cut(s)	446, 739
AluBI	AGCT	6 cut(s)	304, 434, 506, 913, 998, 1037
AluI	AGCT	6 cut(s)	304, 434, 506, 913, 998, 1037
AlwI	GGATC	5 cut(s)	2, 541, 554, 664, 836
AlwNI	CAGNNNCTG	2 cut(s)	307, 1040
AoxI	GGCC	2 cut(s)	674, 988
ApeKI	GCWGC	4 cut(s)	304, 744, 995, 1034
ApoI	RAATTY	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	575, 674, 954
AsuHPI	GGTGA	6 cut(s)	47, 101, 187, 206, 268, 890
AvaII	GGWCC	2 cut(s)	575, 954
BaeGI	GKGCMC	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	291, 731, 1007, 1046
BccI	CCATC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	448, 741
BclI	TGATCA	1 cut(s)	159
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	745
BisI	GCNGC	4 cut(s)	305, 745, 996, 1035
BlsI	GCNGC	4 cut(s)	306, 746, 997, 1036
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	448, 741
Bme18I	GGWCC	2 cut(s)	575, 954
BmgT120I	GGNCC	3 cut(s)	575, 674, 954
BmiI	GGNNCC	2 cut(s)	548, 956
BmrFI	CCNGG	2 cut(s)	448, 741
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	524, 627, 1021
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	739, 767
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	548, 583
Bse8I	GATNNNNATC	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	448, 741
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	739, 767
BseGI	GGATG	2 cut(s)	455, 763
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	548, 583
BseRI	GAGGAG	3 cut(s)	215, 218, 241
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	4 cut(s)	291, 731, 1007, 1046
BshFI	GGCC	2 cut(s)	676, 990
BshVI	ATCGAT	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	940
BsnI	GGCC	2 cut(s)	676, 990
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
BspANI	GGCC	2 cut(s)	676, 990
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	2 cut(s)	361, 892
BspLI	GGNNCC	2 cut(s)	548, 956
BspMAI	CTGCAG	1 cut(s)	749
BspPI	GGATC	5 cut(s)	2, 541, 554, 664, 836
BsrI	ACTGG	2 cut(s)	548, 583
BssECI	CCNNGG	2 cut(s)	739, 767
BssMI	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	448, 741
Bst4CI	ACNGT	4 cut(s)	391, 496, 540, 1013
Bst6I	CTCTTC	3 cut(s)	73, 343, 1014
BstDEI	CTNAG	3 cut(s)	253, 686, 713
BstF5I	GGATG	2 cut(s)	455, 763
BstKTI	GATC	9 cut(s)	10, 162, 318, 322, 336, 549, 659, 831, 967
BstMBI	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 600, 718
BstNI	CCWGG	2 cut(s)	448, 741
BstNSI	RCATGY	2 cut(s)	294, 634
BstSCI	CCNGG	2 cut(s)	446, 739
BstSFI	CTRYAG	1 cut(s)	745
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	4 cut(s)	291, 731, 1007, 1046
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	3 cut(s)	7, 546, 656
BstYI	RGATCY	3 cut(s)	7, 546, 656
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	676, 990
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	455, 763
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	1 cut(s)	876
CaiI	CAGNNNCTG	2 cut(s)	307, 1040
CciI	TCATGA	2 cut(s)	361, 892
Cfr13I	GGNCC	3 cut(s)	575, 674, 954
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	541
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	253, 686, 713
DpnI	GATC	9 cut(s)	9, 161, 317, 321, 335, 548, 658, 830, 966
DpnII	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
Eam1104I	CTCTTC	3 cut(s)	73, 343, 1014
EarI	CTCTTC	3 cut(s)	73, 343, 1014
Eco130I	CCWWGG	1 cut(s)	767
Eco47I	GGWCC	2 cut(s)	575, 954
Eco57I	CTGAAG	3 cut(s)	414, 486, 775
EcoO109I	RGGNCCY	1 cut(s)	954
EcoRII	CCWGG	2 cut(s)	446, 739
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	2 cut(s)	517, 642
ErhI	CCWWGG	1 cut(s)	767
FaqI	GGGAC	1 cut(s)	940
FauNDI	CATATG	1 cut(s)	642
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	305, 745, 996, 1035
FokI	GGATG	2 cut(s)	442, 750
Fsp4HI	GCNGC	4 cut(s)	305, 745, 996, 1035
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	4 cut(s)	305, 745, 996, 1035
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	676, 990
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	3 cut(s)	298, 680, 1058
HphI	GGTGA	6 cut(s)	47, 101, 187, 206, 268, 890
Hpy188I	TCNGA	5 cut(s)	349, 475, 794, 937, 1042
Hpy188III	TCNNGA	5 cut(s)	269, 331, 362, 607, 893
HpyAV	CCTTC	5 cut(s)	93, 253, 275, 622, 847
HpyCH4III	ACNGT	4 cut(s)	391, 496, 540, 1013
HpyCH4V	TGCA	9 cut(s)	294, 515, 634, 640, 747, 869, 924, 995, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 600, 718
HpyF3I	CTNAG	3 cut(s)	253, 686, 713
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
Lsp1109I	GCAGC	4 cut(s)	291, 731, 1007, 1046
LweI	GCATC	3 cut(s)	524, 627, 1021
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	274, 385, 490
MalI	GATC	9 cut(s)	9, 161, 317, 321, 335, 548, 658, 830, 966
MboI	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
MboII	GAAGA	9 cut(s)	60, 298, 330, 377, 380, 383, 420, 1031, 1037
MflI	RGATCY	3 cut(s)	7, 546, 656
MhlI	GDGCHC	1 cut(s)	739
MluCI	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	1 cut(s)	602
Mph1103I	ATGCAT	2 cut(s)	517, 642
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	4 cut(s)	93, 173, 440, 569
MslI	CAYNNNNRTG	2 cut(s)	281, 635
MspA1I	CMGCKG	3 cut(s)	304, 434, 506
MspR9I	CCNGG	2 cut(s)	448, 741
MvaI	CCWGG	2 cut(s)	448, 741
MwoI	GCNNNNNNNGC	3 cut(s)	512, 600, 718
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
NlaIV	GGNNCC	2 cut(s)	548, 956
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	2 cut(s)	517, 642
NspI	RCATGY	2 cut(s)	294, 634
PagI	TCATGA	2 cut(s)	361, 892
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	298, 680
PkrI	GCNGC	4 cut(s)	306, 746, 997, 1036
PleI	GAGTC	1 cut(s)	1052
PpsI	GAGTC	1 cut(s)	1052
PpuMI	RGGWCCY	1 cut(s)	954
PshBI	ATTAAT	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	446, 739
PspGI	CCWGG	2 cut(s)	446, 739
PspN4I	GGNNCC	2 cut(s)	548, 956
PspPI	GGNCC	3 cut(s)	575, 674, 954
PspPPI	RGGWCCY	1 cut(s)	954
PstI	CTGCAG	1 cut(s)	749
PstNI	CAGNNNCTG	2 cut(s)	307, 1040
PsuI	RGATCY	3 cut(s)	7, 546, 656
PvuII	CAGCTG	3 cut(s)	304, 434, 506
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	281, 635
SaqAI	TTAA	4 cut(s)	93, 173, 440, 569
SatI	GCNGC	4 cut(s)	305, 745, 996, 1035
Sau3AI	GATC	9 cut(s)	7, 159, 315, 319, 333, 546, 656, 828, 964
Sau96I	GGNCC	3 cut(s)	575, 674, 954
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	2 cut(s)	448, 741
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	524, 627, 1021
SfcI	CTRYAG	1 cut(s)	745
SinI	GGWCC	2 cut(s)	575, 954
SmiMI	CAYNNNNRTG	2 cut(s)	281, 635
Sse9I	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	446, 739
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	4 cut(s)	391, 496, 540, 1013
TaqI	TCGA	1 cut(s)	318
TasI	AATT	9 cut(s)	19, 103, 118, 136, 564, 570, 901, 1005, 1044
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	298, 680
Tru1I	TTAA	4 cut(s)	93, 173, 440, 569
Tru9I	TTAA	4 cut(s)	93, 173, 440, 569
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	304, 744, 995, 1034
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	7 cut(s)	200, 299, 350, 378, 393, 829, 909
TspRI	CASTG	1 cut(s)	876
VpaK11BI	GGWCC	2 cut(s)	575, 954
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	2 cut(s)	294, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	2 cut(s)	517, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.