AT1G51540

CONTAINS InterPro DOMAIN s Galactose oxidase kelch, beta-propeller (InterPro IPR011043), Kelch repeat type 1 (InterPro IPR006652), Kelch repeat type 2 (InterPro IPR011498), Kelch related (InterPro IPR013089), Kelch-type beta propeller (InterPro IPR015915)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
19115557 .. 19117534
1978 bp
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UTR
Exon/CDS
Intron
AT1G51540.1

Sequence Viewer

Length: 1248 bp
ATGGTAAGGAAGCAGAAGTACGGGAAGGTAGTGTTGGTTTCTTGCATCGCGCTTCTAGCAACCGGACTCATTGCCGACTTTCTCTGGGCTACTTCTCATCGATTCTCCTCCGCCGCAATCTCCGCCGGATTATCTCTACCTTCTTCACTTACCACCGTAATCGTTCCTGGCCAGGAGAAAGATACAAAGAAGAAGAAGGATAGTGTGAAGGAAAGGAAACTGTCTAATACGTTTCAAGATTTGCCTGCTCCTGAATTGAAATGGGAGAAGATGGCAGCTTCACCTGTACCTCGTCTAGACGGAGCTGCAATTCAGATTAGGGATCTTCTTTATGTATTTGCTGGATATGGAACCATTGATCTTGTGCATTCACATGTCGATATCTACAATTTCACTGATAACTCGTGGGGAGGAAGATTCAATATGCCAAAAGATATGGCGCATTCTCATTTAGGGATGGTAACGGATGGGCGATACATTTATATTGTTACTGGTCAGTTTGGTCCACAATGCAGAGGTCCTACAGCTAAAACATTTGTGCTTGATACTGATACAAATACATGGAAGGACTTTGTTCCTTTACCAGTTCCTAGGTATGCACCAGCTACTCAGCTTTGGAGAGGAAGACTTCATGTGATGGGTGGAAGCAAAGAGAATCGATTTACACCAGGACTTGAACATTGGAGCATCGCAGTGAAAGATGGCAAATCTTTGGAAAATGAGTGGAGAAGTGAAATCCCGATCCCTCGTGGAGGACCTCACAGGGCATGTGTAGTAGTTGATGACCGACTATTTGTAATTGGTGGTCAAGAAGGTGATTTCATGGCTAAACCTGGATCTCCAATCTTCAAATGCTCACGCCGTATGGAGGTGGTATTCAGTGATGTCTACATGTTGGATGAGGAAATGAAATGGAAAGTTATGCCGCCGATGCCAAAACCGGACTCCCATATCGAATTTGCTTGGAAAGTCGTTAATAACTCCATTGTAATCGTTGGAGGCACAACAGAGAAACATCCTGAAACCAAAAAGATGGTTCTCGTTGGTGAAATCTTCCAGTTCAACTTAAATACACTGAAATGGTATGTGATTGGGAAATTACCATACCGTGTGAAGACAACGCTGGCTGGGTATTGGGATGGACAGTTATACTTCACCTCAGGACAAAGAGACAAAGGTCCAGATGATCCCGCCCCGAGGAAGGTCATGGCAGAGATGTGGAGAACCAAATTGATACTCAACCCATGA

Protein Analysis

415

Amino Acids

46.75

Weight (kDa)

9.35

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 72 - 191 2e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 86 - 274 4.4e-07 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 88 - 270 4.2e-06 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 147 - 334 1.8e-15 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 148 - 236 6.8e-08 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 50
AciI CCGC 5 cut(s) 111, 114, 123, 926, 1191
AclWI GGATC 4 cut(s) 330, 736, 844, 1181
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 956
AfaI GTAC 2 cut(s) 20, 288
AfiI CCNNNNNNNGG 4 cut(s) 752, 868, 1197, 1201
AflIII ACRYGT 2 cut(s) 373, 891
AgsI TTSAA 6 cut(s) 236, 259, 421, 677, 850, 1063
AjnI CCWGG 4 cut(s) 166, 171, 667, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 278, 305, 527, 605, 613
AluI AGCT 5 cut(s) 278, 305, 527, 605, 613
Alw26I GTCTC 1 cut(s) 1164
AlwI GGATC 4 cut(s) 330, 736, 844, 1181
Ama87I CYCGRG 1 cut(s) 1195
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 275, 305
ApoI RAATTY 1 cut(s) 956
ArsI GACNNNNNNTTYG 2 cut(s) 776, 808
AspA2I CCTAGG 1 cut(s) 590
AspLEI GCGC 2 cut(s) 52, 442
AspS9I GGNCC 4 cut(s) 503, 518, 755, 1178
AsuHPI GGTGA 4 cut(s) 273, 827, 1058, 1147
AvaI CYCGRG 1 cut(s) 1195
AvaII GGWCC 4 cut(s) 503, 518, 755, 1178
AvrII CCTAGG 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 1159
BalI TGGCCA 1 cut(s) 171
BarI GAAGNNNNNNTAC 1 cut(s) 34
BauI CACGAG 2 cut(s) 403, 747
BbsI GAAGAC 2 cut(s) 631, 1121
BbvI GCAGC 2 cut(s) 287, 292
BccI CCATC 7 cut(s) 265, 451, 461, 631, 695, 1027, 1133
BceAI ACGGC 1 cut(s) 846
BciT130I CCWGG 4 cut(s) 168, 173, 669, 834
BcoDI GTCTC 1 cut(s) 1164
BfaI CTAG 3 cut(s) 56, 296, 591
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 4 cut(s) 114, 276, 306, 926
BlnI CCTAGG 1 cut(s) 590
BlsI GCNGC 4 cut(s) 115, 277, 307, 927
Bme1390I CCNGG 4 cut(s) 168, 173, 669, 834
Bme18I GGWCC 4 cut(s) 503, 518, 755, 1178
BmeT110I CYCGRG 1 cut(s) 1195
BmgT120I GGNCC 4 cut(s) 503, 518, 755, 1178
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 4 cut(s) 168, 173, 669, 834
BmsI GCATC 3 cut(s) 54, 696, 921
BoxI GACNNNNGTC 1 cut(s) 1176
BpiI GAAGAC 2 cut(s) 631, 1121
Bsa29I ATCGAT 2 cut(s) 100, 658
BsaJI CCNNGG 2 cut(s) 590, 1196
BsaWI WCCGGW 2 cut(s) 62, 940
Bsc4I CCNNNNNNNGG 4 cut(s) 752, 868, 1197, 1201
Bse1I ACTGG 3 cut(s) 496, 584, 1057
Bse21I CCTNAGG 1 cut(s) 1159
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 4 cut(s) 168, 173, 669, 834
BseCI ATCGAT 2 cut(s) 100, 658
BseDI CCNNGG 2 cut(s) 590, 1196
BseGI GGATG 5 cut(s) 462, 472, 904, 1015, 1144
BseLI CCNNNNNNNGG 4 cut(s) 752, 868, 1197, 1201
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 623, 1173
BseNI ACTGG 3 cut(s) 496, 584, 1057
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 287, 292
BseYI CCCAGC 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 171
BshVI ATCGAT 2 cut(s) 100, 658
BsiHKCI CYCGRG 1 cut(s) 1195
BsiSI CCGG 3 cut(s) 63, 126, 941
BslI CCNNNNNNNGG 4 cut(s) 752, 868, 1197, 1201
BsmAI GTCTC 1 cut(s) 1164
BsmI GAATGC 2 cut(s) 367, 442
BsnI GGCC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 1195
Bsp143I GATC 5 cut(s) 322, 358, 741, 836, 1186
BspACI CCGC 5 cut(s) 111, 114, 123, 926, 1191
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 622, 1172
BspDI ATCGAT 2 cut(s) 100, 658
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 4 cut(s) 330, 736, 844, 1181
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 3 cut(s) 496, 584, 1057
BssECI CCNNGG 2 cut(s) 590, 1196
BssMI GATC 5 cut(s) 322, 358, 741, 836, 1186
BssSI CACGAG 2 cut(s) 403, 747
BssT1I CCWWGG 1 cut(s) 590
Bst2BI CACGAG 2 cut(s) 403, 747
Bst2UI CCWGG 4 cut(s) 168, 173, 669, 834
Bst4CI ACNGT 4 cut(s) 157, 222, 1109, 1146
BstC8I GCNNGC 2 cut(s) 246, 1125
BstDEI CTNAG 2 cut(s) 609, 1159
BstENI CCTNNNNNAGG 1 cut(s) 750
BstF5I GGATG 5 cut(s) 462, 472, 904, 1015, 1144
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 2 cut(s) 52, 442
BstKTI GATC 5 cut(s) 325, 361, 744, 839, 1189
BstMAI GTCTC 1 cut(s) 1164
BstMBI GATC 5 cut(s) 322, 358, 741, 836, 1186
BstMWI GCNNNNNNNGC 3 cut(s) 56, 122, 931
BstNI CCWGG 4 cut(s) 168, 173, 669, 834
BstNSI RCATGY 3 cut(s) 377, 771, 895
BstPAI GACNNNNGTC 1 cut(s) 1176
BstSCI CCNGG 4 cut(s) 166, 171, 667, 832
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 287, 292
BstV2I GAAGAC 2 cut(s) 631, 1121
BstX2I RGATCY 2 cut(s) 322, 836
BstXI CCANNNNNNTGG 1 cut(s) 1033
BstYI RGATCY 2 cut(s) 322, 836
Bsu15I ATCGAT 2 cut(s) 100, 658
Bsu36I CCTNAGG 1 cut(s) 1159
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 2 cut(s) 100, 658
BtgZI GCGATG 2 cut(s) 31, 673
BtsCI GGATG 5 cut(s) 462, 472, 904, 1015, 1144
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 4 cut(s) 393, 699, 886, 1073
Cac8I GCNNGC 2 cut(s) 246, 1125
CfoI GCGC 2 cut(s) 52, 442
Cfr13I GGNCC 4 cut(s) 503, 518, 755, 1178
ClaI ATCGAT 2 cut(s) 100, 658
Csp6I GTAC 2 cut(s) 19, 287
CviAII CATG 8 cut(s) 374, 561, 632, 768, 823, 892, 1207, 1245
CviJI RGCY 9 cut(s) 89, 171, 278, 305, 527, 605, 613, 827, 1127
CviKI_1 RGCY 9 cut(s) 89, 171, 278, 305, 527, 605, 613, 827, 1127
CviQI GTAC 2 cut(s) 19, 287
DdeI CTNAG 2 cut(s) 609, 1159
DpnI GATC 5 cut(s) 324, 360, 743, 838, 1188
DpnII GATC 5 cut(s) 322, 358, 741, 836, 1186
EaeI YGGCCR 1 cut(s) 169
EciI GGCGGA 2 cut(s) 100, 112
Eco130I CCWWGG 1 cut(s) 590
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 4 cut(s) 503, 518, 755, 1178
Eco81I CCTNAGG 1 cut(s) 1159
Eco88I CYCGRG 1 cut(s) 1195
EcoNI CCTNNNNNAGG 1 cut(s) 750
EcoO109I RGGNCCY 2 cut(s) 518, 755
EcoRII CCWGG 4 cut(s) 166, 171, 667, 832
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 8 cut(s) 377, 564, 635, 771, 826, 895, 1210, 1248
FatI CATG 8 cut(s) 373, 560, 631, 767, 822, 891, 1206, 1244
FauI CCCGC 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 4 cut(s) 114, 276, 306, 926
FokI GGATG 5 cut(s) 469, 479, 911, 1002, 1151
Fsp4HI GCNGC 4 cut(s) 114, 276, 306, 926
FspBI CTAG 3 cut(s) 56, 296, 591
GlaI GCGC 2 cut(s) 51, 441
GluI GCNGC 4 cut(s) 114, 276, 306, 926
GsaI CCCAGC 1 cut(s) 1131
HaeIII GGCC 1 cut(s) 171
HapII CCGG 3 cut(s) 63, 126, 941
HhaI GCGC 2 cut(s) 52, 442
Hin1II CATG 8 cut(s) 377, 564, 635, 771, 826, 895, 1210, 1248
Hin6I GCGC 2 cut(s) 50, 440
HinP1I GCGC 2 cut(s) 50, 440
HinfI GANTC 5 cut(s) 66, 102, 417, 655, 944
HpaII CCGG 3 cut(s) 63, 126, 941
HphI GGTGA 4 cut(s) 273, 827, 1058, 1147
Hpy166II GTNNAC 2 cut(s) 506, 889
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 8 cut(s) 236, 251, 296, 739, 809, 1019, 1161, 1181
Hpy8I GTNNAC 2 cut(s) 506, 889
HpyAV CCTTC 7 cut(s) 19, 150, 190, 202, 559, 806, 1195
HpyCH4III ACNGT 4 cut(s) 157, 222, 1109, 1146
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 45, 308, 367, 513, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 122, 931
HpyF3I CTNAG 2 cut(s) 609, 1159
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 8 cut(s) 377, 564, 635, 771, 826, 895, 1210, 1248
HspAI GCGC 2 cut(s) 50, 440
Kzo9I GATC 5 cut(s) 322, 358, 741, 836, 1186
LmnI GCTCC 3 cut(s) 253, 302, 684
Lsp1109I GCAGC 2 cut(s) 287, 292
LweI GCATC 3 cut(s) 54, 696, 921
MaeI CTAG 3 cut(s) 56, 296, 591
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 460, 487
MalI GATC 5 cut(s) 324, 360, 743, 838, 1188
MboI GATC 5 cut(s) 322, 358, 741, 836, 1186
MflI RGATCY 2 cut(s) 322, 836
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 7 cut(s) 254, 309, 388, 798, 956, 1097, 1229
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 2 cut(s) 60, 938
MmeI TCCRAC 2 cut(s) 876, 976
Mox20I TGGCCA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 171
MseI TTAA 2 cut(s) 975, 1067
MslI CAYNNNNRTG 3 cut(s) 372, 692, 1078
Msp20I TGGCCA 1 cut(s) 171
MspI CCGG 3 cut(s) 63, 126, 941
MspR9I CCNGG 4 cut(s) 168, 173, 669, 834
Mva1269I GAATGC 2 cut(s) 367, 442
MvaI CCWGG 4 cut(s) 168, 173, 669, 834
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 56, 122, 931
NdeII GATC 5 cut(s) 322, 358, 741, 836, 1186
NlaIII CATG 8 cut(s) 377, 564, 635, 771, 826, 895, 1210, 1248
NlaIV GGNNCC 1 cut(s) 352
NspI RCATGY 3 cut(s) 377, 771, 895
PciI ACATGT 2 cut(s) 373, 891
PctI GAATGC 2 cut(s) 367, 442
PfeI GAWTC 3 cut(s) 102, 417, 655
PkrI GCNGC 4 cut(s) 115, 277, 307, 927
PleI GAGTC 2 cut(s) 60, 938
PpsI GAGTC 2 cut(s) 60, 938
PpuMI RGGWCCY 2 cut(s) 518, 755
PscI ACATGT 2 cut(s) 373, 891
PshAI GACNNNNGTC 1 cut(s) 1176
Psp5II RGGWCCY 2 cut(s) 518, 755
Psp6I CCWGG 4 cut(s) 166, 171, 667, 832
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 4 cut(s) 166, 171, 667, 832
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 4 cut(s) 503, 518, 755, 1178
PspPPI RGGWCCY 2 cut(s) 518, 755
PsuI RGATCY 2 cut(s) 322, 836
RsaI GTAC 2 cut(s) 20, 288
RsaNI GTAC 2 cut(s) 19, 287
RseI CAYNNNNRTG 3 cut(s) 372, 692, 1078
SaqAI TTAA 2 cut(s) 975, 1067
SatI GCNGC 4 cut(s) 114, 276, 306, 926
Sau3AI GATC 5 cut(s) 322, 358, 741, 836, 1186
Sau96I GGNCC 4 cut(s) 503, 518, 755, 1178
SchI GAGTC 2 cut(s) 60, 938
ScrFI CCNGG 4 cut(s) 168, 173, 669, 834
SfaNI GCATC 3 cut(s) 54, 696, 921
SfcI CTRYAG 1 cut(s) 522
SinI GGWCC 4 cut(s) 503, 518, 755, 1178
SmiMI CAYNNNNRTG 3 cut(s) 372, 692, 1078
Sse9I AATT 7 cut(s) 254, 309, 388, 798, 956, 1097, 1229
SsiI CCGC 5 cut(s) 111, 114, 123, 926, 1191
SspMI CTAG 3 cut(s) 56, 296, 591
StyD4I CCNGG 4 cut(s) 166, 171, 667, 832
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 4 cut(s) 157, 222, 1109, 1146
TaiI ACGT 1 cut(s) 233
TaqI TCGA 4 cut(s) 100, 378, 658, 954
TaqII GACCGA 1 cut(s) 801
TasI AATT 7 cut(s) 254, 309, 388, 798, 956, 1097, 1229
TauI GCSGC 2 cut(s) 116, 928
TfiI GAWTC 3 cut(s) 102, 417, 655
Tru1I TTAA 2 cut(s) 975, 1067
Tru9I TTAA 2 cut(s) 975, 1067
TscAI CASTG 4 cut(s) 400, 699, 886, 1080
TseI GCWGC 2 cut(s) 275, 305
TspDTI ATGAA 3 cut(s) 620, 811, 923
TspGWI ACGGA 2 cut(s) 315, 479
TspRI CASTG 4 cut(s) 400, 699, 886, 1080
VpaK11BI GGWCC 4 cut(s) 503, 518, 755, 1178
XagI CCTNNNNNAGG 1 cut(s) 750
XapI RAATTY 1 cut(s) 956
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 3 cut(s) 377, 771, 895
XmaJI CCTAGG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 3 cut(s) 56, 296, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.