RchiOBHm_Chr2g0149661

Kelch repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
67481819 .. 67487265
5447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51906

Sequence Viewer

Length: 1254 bp
ATGGTTAGAGCAGCTGGGAAGCACACATCGGCCCGTTTGGTCTTGATTTGCGTTGGCCTTCTGGGTATTGCTCTCATTGCTGATTTCCTCTGGGCTTCTTCTTCTTCTTCTCGTTTTGCTCTCATTGGCGCCAATTGGGCTCCTCCTGTTTCGCTCCTCACCCCCATAACCATACCCAACAAGGGAGTAGACAGTCAAAAGAACAATACAACTACCGGGAGGGTTTTGTCTGCAACTTTTGCTGATTTGCCTGCACCAGAACTAAAATGGGAAAAGATGGCTGCCGCACCTGTGCCTCGTTTGGATGGAGCTGCTATGCAGATTAAGAATCTTCTATACGTGTTTGCTGGATACGGTACAATTGATTATGTACATTCACATGTTGACATCTACAATTTCAGTGATAATACATGGGGAGGAAGATTTGATATGCCGAAAGAAATGGCACATTCTCATCTAGGAATGGTAACTGATGGAAGGTACATATACATTGTCAATGGACAGTATGGGCCACAGTGCAGAGGCCCCACATCTCATACATTCACCCTTGATACTGAGACAAAGAAGTGGCAGAATATGCCCCCATTACCAGTTCCAAGGTATGCACCAGCAACTCAACTTTGGAGAGGTAGACTCCATGTAATGGGCGGTAGCAAGGAAAATCGACATACACCTGCAGTAGACCATTGGAGTCTTGCTGTAAAAGATGGAAAAGCATTAGAAAAGGAATGGAGGACTGAAGTGCCTATTCCCAAGGGAGGACCTCATAGGGCTTCTATAGTTTATAATGATCGTCTTTATGTTATGGGTGGTCAAGAGGGTGATTTCATGGCAAAACCTGGATCACCTATTTTCAAGTGCTCTCGTAGGAATGAGGTTGTATATGGCGATGTTTACATGCTGGATGATGAAATGAAGTGGAAAGTGTTACCTCCTATGCCTAAGCCAGATTCCCATATTGAATTTGCTTGGGCTCTTGTTGACAATTCTGTTATTATTGTTGGAGGCACAACAGAGAAGCACCCTATAACTAAGAAGATGGTTTTGGTTGGAGAAATGTTCCAGTTTAACTTCGATACTCTGAACTGGTCAGTCATAGGGAAACTACCATTTCGAGTTAAAACCACGCTAGTAGGTTTCTGGAAAGGGTGGTTGTATTTCACATCAGGACAGCGGGACAAAGGACCAGAGGATCCAGCACCAAAGAAAGTGATTGGAGAACTATGGAGAACAAAGTTAAACCTGGGCTCGTGA

Protein Analysis

417

Amino Acids

46.54

Weight (kDa)

9.36

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 88 - 194 6.3e-08 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 107 - 276 1.8e-09 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 146 - 336 2.6e-15 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 150 - 278 1.9e-10 FKB95, Kelch-repeats domain
Beta-prop_FBX42 PF13415 153 - 275 1.5e-06 FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 208 - 366 1.2e-10 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42 PF13415 210 - 365 1.8e-08 FBX42, beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 643
AccI GTMKAC 3 cut(s) 189, 631, 681
AciI CCGC 3 cut(s) 285, 648, 1174
AclWI GGATC 3 cut(s) 850, 1187, 1200
AcsI RAATTY 1 cut(s) 962
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 358, 372, 482
AfiI CCNNNNNNNGG 3 cut(s) 182, 643, 758
AflIII ACRYGT 2 cut(s) 339, 379
AgsI TTSAA 2 cut(s) 856, 962
AjnI CCWGG 2 cut(s) 838, 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 1028, 1060
AluBI AGCT 2 cut(s) 14, 311
AluI AGCT 2 cut(s) 14, 311
Alw21I GWGCWC 1 cut(s) 863
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 3 cut(s) 850, 1187, 1200
AoxI GGCC 4 cut(s) 30, 55, 509, 523
ApeKI GCWGC 3 cut(s) 11, 281, 311
ApoI RAATTY 1 cut(s) 962
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 5 cut(s) 31, 509, 524, 761, 1184
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 4 cut(s) 151, 535, 833, 837
AvaII GGWCC 2 cut(s) 761, 1184
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 3 cut(s) 142, 976, 1250
BauI CACGAG 1 cut(s) 1249
Bbv12I GWGCWC 1 cut(s) 863
BbvI GCAGC 3 cut(s) 23, 268, 298
BccI CCATC 5 cut(s) 271, 299, 467, 701, 1033
BciT130I CCWGG 2 cut(s) 840, 1244
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 2 cut(s) 458, 1130
BfmI CTRYAG 2 cut(s) 675, 777
BfoI RGCGCY 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 682
BfuI GTATCC 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 4 cut(s) 12, 282, 285, 312
BlsI GCNGC 4 cut(s) 13, 283, 286, 313
Bme1390I CCNGG 3 cut(s) 217, 840, 1244
Bme18I GGWCC 2 cut(s) 761, 1184
BmgT120I GGNCC 5 cut(s) 31, 509, 524, 761, 1184
BmiI GGNNCC 4 cut(s) 130, 141, 526, 1194
BmrFI CCNGG 3 cut(s) 217, 840, 1244
BplI GAGNNNNNCTC 2 cut(s) 618, 650
Bpu10I CCTNAGC 1 cut(s) 942
BpuMI CCSGG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 596, 753, 1243
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 643, 758
Bse1I ACTGG 3 cut(s) 590, 1063, 1091
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 2 cut(s) 840, 1244
BseDI CCNNGG 3 cut(s) 596, 753, 1243
BseGI GGATG 2 cut(s) 310, 910
BseLI CCNNNNNNNGG 3 cut(s) 182, 643, 758
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 590, 1063, 1091
BseRI GAGGAG 2 cut(s) 132, 146
BseXI GCAGC 3 cut(s) 23, 268, 298
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 2 cut(s) 237, 538
BshFI GGCC 4 cut(s) 32, 57, 511, 525
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 863
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 1190
BslI CCNNNNNNNGG 3 cut(s) 182, 643, 758
BsmAI GTCTC 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 1190
BsnI GGCC 4 cut(s) 32, 57, 511, 525
Bsp1286I GDGCHC 4 cut(s) 142, 863, 976, 1250
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 3 cut(s) 790, 842, 1192
BspACI CCGC 3 cut(s) 285, 648, 1174
BspANI GGCC 4 cut(s) 32, 57, 511, 525
BspCNI CTCAG 1 cut(s) 547
BspLI GGNNCC 4 cut(s) 130, 141, 526, 1194
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 3 cut(s) 850, 1187, 1200
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 3 cut(s) 590, 1063, 1091
BssECI CCNNGG 3 cut(s) 596, 753, 1243
BssMI GATC 3 cut(s) 790, 842, 1192
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 1249
BssT1I CCWWGG 2 cut(s) 596, 753
Bst2BI CACGAG 1 cut(s) 1249
Bst2UI CCWGG 2 cut(s) 840, 1244
Bst4CI ACNGT 4 cut(s) 194, 356, 504, 516
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 2 cut(s) 239, 577
BstAUI TGTACA 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 555, 942, 1032
BstF5I GGATG 2 cut(s) 310, 910
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 3 cut(s) 793, 845, 1195
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 3 cut(s) 790, 842, 1192
BstMWI GCNNNNNNNGC 4 cut(s) 77, 137, 239, 577
BstNI CCWGG 2 cut(s) 840, 1244
BstNSI RCATGY 2 cut(s) 383, 901
BstSCI CCNGG 3 cut(s) 215, 838, 1242
BstSFI CTRYAG 2 cut(s) 675, 777
BstV1I GCAGC 3 cut(s) 23, 268, 298
BstX2I RGATCY 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1192
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 4 cut(s) 32, 57, 511, 525
BtgZI GCGATG 1 cut(s) 903
BtsCI GGATG 2 cut(s) 310, 910
BtsIMutI CAGTG 2 cut(s) 406, 521
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 5 cut(s) 31, 509, 524, 761, 1184
Csp6I GTAC 3 cut(s) 357, 371, 481
CviAII CATG 5 cut(s) 380, 411, 638, 829, 898
CviQI GTAC 3 cut(s) 357, 371, 481
DdeI CTNAG 3 cut(s) 555, 942, 1032
DinI GGCGCC 1 cut(s) 130
DpnI GATC 3 cut(s) 792, 844, 1194
DpnII GATC 3 cut(s) 790, 842, 1192
Eco130I CCWWGG 2 cut(s) 596, 753
Eco24I GRGCYC 3 cut(s) 142, 976, 1250
Eco47I GGWCC 2 cut(s) 761, 1184
Eco57I CTGAAG 1 cut(s) 759
EcoO109I RGGNCCY 2 cut(s) 524, 761
EcoRII CCWGG 2 cut(s) 838, 1242
EcoT14I CCWWGG 2 cut(s) 596, 753
EcoT38I GRGCYC 3 cut(s) 142, 976, 1250
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 596, 753
FaeI CATG 5 cut(s) 383, 414, 641, 832, 901
FaqI GGGAC 1 cut(s) 1190
FatI CATG 5 cut(s) 379, 410, 637, 828, 897
FauI CCCGC 1 cut(s) 1167
FblI GTMKAC 3 cut(s) 189, 631, 681
Fnu4HI GCNGC 4 cut(s) 12, 282, 285, 312
FokI GGATG 2 cut(s) 317, 917
FriOI GRGCYC 3 cut(s) 142, 976, 1250
Fsp4HI GCNGC 4 cut(s) 12, 282, 285, 312
FspBI CTAG 2 cut(s) 458, 1130
GlaI GCGC 1 cut(s) 130
GluI GCNGC 4 cut(s) 12, 282, 285, 312
GsaI CCCAGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 4 cut(s) 32, 57, 511, 525
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 5 cut(s) 383, 414, 641, 832, 901
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 2 cut(s) 385, 982
HindII GTYRAC 2 cut(s) 385, 982
HinfI GANTC 4 cut(s) 328, 633, 691, 950
HpaII CCGG 1 cut(s) 216
HphI GGTGA 4 cut(s) 151, 535, 833, 837
Hpy166II GTNNAC 6 cut(s) 190, 385, 632, 682, 895, 982
Hpy188I TCNGA 1 cut(s) 1083
Hpy188III TCNNGA 5 cut(s) 43, 815, 1141, 1167, 1251
Hpy8I GTNNAC 6 cut(s) 190, 385, 632, 682, 895, 982
HpyAV CCTTC 2 cut(s) 68, 471
HpyCH4III ACNGT 4 cut(s) 194, 356, 504, 516
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 6 cut(s) 233, 254, 319, 519, 605, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 137, 239, 577
HpyF3I CTNAG 3 cut(s) 555, 942, 1032
HpySE526I ACGT 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 5 cut(s) 383, 414, 641, 832, 901
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 3 cut(s) 790, 842, 1192
LmnI GCTCC 3 cut(s) 145, 159, 308
Lsp1109I GCAGC 3 cut(s) 23, 268, 298
MaeI CTAG 2 cut(s) 458, 1130
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 466, 927
MalI GATC 3 cut(s) 792, 844, 1194
MboI GATC 3 cut(s) 790, 842, 1192
MboII GAAGA 7 cut(s) 90, 93, 96, 99, 323, 432, 1048
MfeI CAATTG 2 cut(s) 133, 360
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 4 cut(s) 142, 863, 976, 1250
MluCI AATT 5 cut(s) 133, 360, 394, 962, 985
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 627, 700
MmeI TCCRAC 2 cut(s) 982, 1030
MseI TTAA 4 cut(s) 324, 1068, 1119, 1238
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 14, 1174
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 217, 840, 1244
MunI CAATTG 2 cut(s) 133, 360
MvaI CCWGG 2 cut(s) 840, 1244
MwoI GCNNNNNNNGC 4 cut(s) 77, 137, 239, 577
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 1 cut(s) 217
NdeII GATC 3 cut(s) 790, 842, 1192
NlaIII CATG 5 cut(s) 383, 414, 641, 832, 901
NlaIV GGNNCC 4 cut(s) 130, 141, 526, 1194
NspI RCATGY 2 cut(s) 383, 901
PaqCI CACCTGC 1 cut(s) 682
PciI ACATGT 1 cut(s) 379
PfeI GAWTC 2 cut(s) 328, 950
PflMI CCANNNNNTGG 1 cut(s) 643
PkrI GCNGC 4 cut(s) 13, 283, 286, 313
PleI GAGTC 2 cut(s) 627, 699
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 627, 699
Ppu21I YACGTR 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 761
PscI ACATGT 1 cut(s) 379
PsiI TTATAA 1 cut(s) 786
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 838, 1242
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 2 cut(s) 838, 1242
PspN4I GGNNCC 4 cut(s) 130, 141, 526, 1194
PspPI GGNCC 5 cut(s) 31, 509, 524, 761, 1184
PspPPI RGGWCCY 1 cut(s) 761
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 1 cut(s) 1192
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 3 cut(s) 358, 372, 482
RsaNI GTAC 3 cut(s) 357, 371, 481
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 4 cut(s) 324, 1068, 1119, 1238
SatI GCNGC 4 cut(s) 12, 282, 285, 312
Sau3AI GATC 3 cut(s) 790, 842, 1192
Sau96I GGNCC 5 cut(s) 31, 509, 524, 761, 1184
SchI GAGTC 2 cut(s) 627, 700
ScrFI CCNGG 3 cut(s) 217, 840, 1244
SduI GDGCHC 4 cut(s) 142, 863, 976, 1250
SfcI CTRYAG 2 cut(s) 675, 777
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 2 cut(s) 761, 1184
SmiMI CAYNNNNRTG 1 cut(s) 378
Sse9I AATT 5 cut(s) 133, 360, 394, 962, 985
SsiI CCGC 3 cut(s) 285, 648, 1174
SspDI GGCGCC 1 cut(s) 128
SspMI CTAG 2 cut(s) 458, 1130
StyD4I CCNGG 3 cut(s) 215, 838, 1242
StyI CCWWGG 2 cut(s) 596, 753
TaaI ACNGT 4 cut(s) 194, 356, 504, 516
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 664, 1074, 1114
TasI AATT 5 cut(s) 133, 360, 394, 962, 985
TatI WGTACW 1 cut(s) 370
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 2 cut(s) 328, 950
Tru1I TTAA 4 cut(s) 324, 1068, 1119, 1238
Tru9I TTAA 4 cut(s) 324, 1068, 1119, 1238
TscAI CASTG 2 cut(s) 406, 521
TseI GCWGC 3 cut(s) 11, 281, 311
TspDTI ATGAA 3 cut(s) 817, 924, 929
TspRI CASTG 2 cut(s) 406, 521
Van91I CCANNNNNTGG 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 761, 1184
XapI RAATTY 1 cut(s) 962
XceI RCATGY 2 cut(s) 383, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XmiI GTMKAC 3 cut(s) 189, 631, 681
XspI CTAG 2 cut(s) 458, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.