Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Reverse (-)

6140342 .. 6144384

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAATGTTTTCGTCTGTGAGTTGTTTAGATGGCGAGGAAGCGTCAATTACAAAAACGATACTGCTCCTGGAAGAGTTTTATCAGCAACCTTTGCTGATTTGCCTGGACCAGAATTAAAATGGGAAAGTATGGCTGAGGCACCCGTACCTCGTTTGGATGGAGCTGCTATACAGATAAAGAATCTTCTCTTCGTGTTTGCTGGATACGGCACCATTGATTATGTGAGAACATTGTTTTGCTCATTTACTAAATTCTTTTTTATTGTCCATTCGCATGTTGATATGTACAATTTCAGTGATAACAAATGGGGAGAAAGATTTGATATGCCAAAAGAAATGGCACATTCACATCTAGGAATGGTAACCGACGGAAGGTACATATACATTGTCACAGGACAGTATGGGCCACAGTGCAGAGGGCCCACAGCTCATACGTTTGTGCTTGATACTGAGACAAAGCAGTGGCGGGACATGCCTCCTCTGCCAGTTCCTAGGTATGCACCAGCAACGCAACTTTGGAAAGGTAGACTACATGTAATGGGTGGTAGTGGGGAGAACCGATATACACCTGAAGTGGACCATTGGAGTCTTGCTGTAAAAGATGGGAAAGTATTAGAAAAGGAATGGAGGACTGAAATTCCTATTCCCCGGGGAGGACCTCATAGGTCTGGTGATATCATGGCCAAACCCGGATCACCTATTTCCAAGTGCTCTCGTAGGAATGAGGTTGTATATAGTGATGTTTACATGATGGATGACGAAATGAAGTGGAAGGAGTTGCCTCCCATGCCTAAACCAGATTCCCATATTGAATTCGCTTGGACTGTTGTTAACAACTCTATTGTTATCGTTGGAGGCACAACTGAGAAGCACCCTGTAACTAAGAAGATGACTTTGGTTGGTGAAATATTCCAGTTCAACTTGAATACACCGGTATTTCCTTTCTTCTGTTATCGAAATCTCGGCAATTTTTCTAATTTGTTGCGATGCGTATTACCCCTGTGCTCCTCATGTCCTAAGGGCTTGGGCTCTAATGTTAAGTTTCTACTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

352

Amino Acids

39.95

Weight (kDa)

8.67

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	42 - 159	6.7e-06	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	44 - 200	1.8e-06	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	95 - 286	3.4e-15	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95	PF25210	113 - 188	5.5e-09	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	139, 209
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	1 cut(s)	700
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	3 cut(s)	251, 636, 812
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	147, 287, 377
AfiI	CCNNNNNNNGG	2 cut(s)	372, 653
AflIII	ACRYGT	1 cut(s)	532
AgeI	ACCGGT	1 cut(s)	931
AgsI	TTSAA	3 cut(s)	812, 919, 925
AjnI	CCWGG	2 cut(s)	67, 103
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	2 cut(s)	164, 428
AluI	AGCT	2 cut(s)	164, 428
Alw21I	GWGCWC	2 cut(s)	713, 1007
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	700
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	3 cut(s)	404, 419, 681
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	251, 636, 812
AsiGI	ACCGGT	1 cut(s)	931
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	491
AspS9I	GGNCC	6 cut(s)	107, 404, 419, 420, 577, 656
AsuC2I	CCSGG	3 cut(s)	649, 650, 690
AsuHPI	GGTGA	3 cut(s)	683, 687, 914
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	3 cut(s)	107, 577, 656
AvrII	CCTAGG	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	1017
BaeGI	GKGCMC	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	683
BanI	GGYRCC	2 cut(s)	139, 209
BanII	GRGCYC	2 cut(s)	423, 1031
Bbv12I	GWGCWC	2 cut(s)	713, 1007
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	4 cut(s)	24, 152, 596, 745
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	69, 105
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	3 cut(s)	649, 650, 690
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	353, 492
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	165
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	5 cut(s)	69, 105, 649, 650, 690
Bme18I	GGWCC	3 cut(s)	107, 577, 656
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	6 cut(s)	107, 404, 419, 420, 577, 656
BmiI	GGNNCC	3 cut(s)	141, 211, 421
BmrFI	CCNGG	5 cut(s)	69, 105, 649, 650, 690
BmsI	GCATC	1 cut(s)	977
Bpu10I	CCTNAGC	1 cut(s)	135
BpuMI	CCSGG	3 cut(s)	649, 650, 690
BsaJI	CCNNGG	4 cut(s)	491, 647, 648, 649
BsaWI	WCCGGW	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 653
Bse118I	RCCGGY	1 cut(s)	931
Bse1I	ACTGG	2 cut(s)	485, 913
Bse21I	CCTNAGG	1 cut(s)	1017
BseBI	CCWGG	2 cut(s)	69, 105
BseDI	CCNNGG	4 cut(s)	491, 647, 648, 649
BseGI	GGATG	2 cut(s)	163, 760
BseLI	CCNNNNNNNGG	2 cut(s)	372, 653
BseMII	CTCAG	3 cut(s)	126, 441, 855
BseNI	ACTGG	2 cut(s)	485, 913
BseRI	GAGGAG	2 cut(s)	468, 997
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	433
BshFI	GGCC	3 cut(s)	406, 421, 683
BshNI	GGYRCC	2 cut(s)	139, 209
BshTI	ACCGGT	1 cut(s)	931
BsiHKAI	GWGCWC	2 cut(s)	713, 1007
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	3 cut(s)	649, 690, 932
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	372, 653
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	3 cut(s)	406, 421, 683
BsoBI	CYCGRG	1 cut(s)	648
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	4 cut(s)	423, 713, 1007, 1031
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	692
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	3 cut(s)	406, 421, 683
BspCNI	CTCAG	3 cut(s)	127, 442, 856
BspLI	GGNNCC	3 cut(s)	141, 211, 421
BspPI	GGATC	1 cut(s)	700
BspT107I	GGYRCC	2 cut(s)	139, 209
BsrFI	RCCGGY	1 cut(s)	931
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	485, 913
BssAI	RCCGGY	1 cut(s)	931
BssECI	CCNNGG	4 cut(s)	491, 647, 648, 649
BssMI	GATC	1 cut(s)	692
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	69, 105
Bst4CI	ACNGT	3 cut(s)	399, 411, 826
Bst6I	CTCTTC	2 cut(s)	67, 194
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	285
BstDEI	CTNAG	5 cut(s)	135, 450, 864, 882, 1017
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	163, 760
BstKTI	GATC	1 cut(s)	695
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	1 cut(s)	692
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 472, 481, 787
BstNI	CCWGG	2 cut(s)	69, 105
BstNSI	RCATGY	3 cut(s)	278, 475, 536
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	5 cut(s)	67, 103, 647, 648, 688
BstSLI	GKGCMC	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	1017
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	406, 421, 683
BtgZI	GCGATG	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	163, 760
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	301, 416, 467
Cfr10I	RCCGGY	1 cut(s)	931
Cfr13I	GGNCC	6 cut(s)	107, 404, 419, 420, 577, 656
Cfr9I	CCCGGG	1 cut(s)	648
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	146, 286, 376
CspAI	ACCGGT	1 cut(s)	931
CviAII	CATG	7 cut(s)	275, 472, 533, 679, 748, 787, 1011
CviJI	RGCY	8 cut(s)	134, 164, 406, 421, 428, 683, 1023, 1029
CviKI_1	RGCY	8 cut(s)	134, 164, 406, 421, 428, 683, 1023, 1029
CviQI	GTAC	3 cut(s)	146, 286, 376
DdeI	CTNAG	5 cut(s)	135, 450, 864, 882, 1017
DpnI	GATC	1 cut(s)	694
DpnII	GATC	1 cut(s)	692
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	67, 194
EarI	CTCTTC	2 cut(s)	67, 194
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	2 cut(s)	423, 1031
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	3 cut(s)	107, 577, 656
Eco57I	CTGAAG	1 cut(s)	591
Eco81I	CCTNAGG	1 cut(s)	1017
Eco88I	CYCGRG	1 cut(s)	648
Eco91I	GGTNACC	1 cut(s)	361
EcoO109I	RGGNCCY	2 cut(s)	419, 656
EcoO65I	GGTNACC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	812
EcoRII	CCWGG	2 cut(s)	67, 103
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	2 cut(s)	423, 1031
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	7 cut(s)	278, 475, 536, 682, 751, 790, 1014
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	7 cut(s)	274, 471, 532, 678, 747, 786, 1010
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	170, 767
FriOI	GRGCYC	2 cut(s)	423, 1031
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	353, 492
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	406, 421, 683
HapII	CCGG	3 cut(s)	649, 690, 932
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	7 cut(s)	278, 475, 536, 682, 751, 790, 1014
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	3 cut(s)	181, 586, 800
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	3 cut(s)	649, 690, 932
HphI	GGTGA	3 cut(s)	683, 687, 914
Hpy166II	GTNNAC	4 cut(s)	527, 577, 745, 832
Hpy188I	TCNGA	1 cut(s)	1055
Hpy8I	GTNNAC	4 cut(s)	527, 577, 745, 832
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	366, 766
HpyCH4III	ACNGT	3 cut(s)	399, 411, 826
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	414, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 472, 481, 787
HpyF3I	CTNAG	5 cut(s)	135, 450, 864, 882, 1017
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	7 cut(s)	278, 475, 536, 682, 751, 790, 1014
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	1 cut(s)	692
LmnI	GCTCC	3 cut(s)	70, 161, 1010
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	977
MaeI	CTAG	2 cut(s)	353, 492
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	361, 388, 877
MalI	GATC	1 cut(s)	694
MboI	GATC	1 cut(s)	692
MboII	GAAGA	6 cut(s)	84, 176, 181, 898, 937, 1042
MhlI	GDGCHC	4 cut(s)	423, 713, 1007, 1031
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	8 cut(s)	46, 113, 251, 289, 636, 812, 967, 976
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	832
Mox20I	TGGCCA	1 cut(s)	683
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	3 cut(s)	116, 831, 1038
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	683
MspI	CCGG	3 cut(s)	649, 690, 932
MspR9I	CCNGG	5 cut(s)	69, 105, 649, 650, 690
MvaI	CCWGG	2 cut(s)	69, 105
MwoI	GCNNNNNNNGC	4 cut(s)	92, 472, 481, 787
NciI	CCSGG	3 cut(s)	649, 650, 690
NdeII	GATC	1 cut(s)	692
NlaIII	CATG	7 cut(s)	278, 475, 536, 682, 751, 790, 1014
NlaIV	GGNNCC	3 cut(s)	141, 211, 421
NmeAIII	GCCGAG	1 cut(s)	942
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	3 cut(s)	278, 475, 536
PciI	ACATGT	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	181, 800
PfoI	TCCNGGA	1 cut(s)	67
PinAI	ACCGGT	1 cut(s)	931
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	67, 103
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	67, 103
PspN4I	GGNNCC	3 cut(s)	141, 211, 421
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	6 cut(s)	107, 404, 419, 420, 577, 656
PspPPI	RGGWCCY	1 cut(s)	656
RsaI	GTAC	3 cut(s)	147, 287, 377
RsaNI	GTAC	3 cut(s)	146, 286, 376
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	116, 831, 1038
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	692
Sau96I	GGNCC	6 cut(s)	107, 404, 419, 420, 577, 656
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	5 cut(s)	69, 105, 649, 650, 690
SduI	GDGCHC	4 cut(s)	423, 713, 1007, 1031
SfaNI	GCATC	1 cut(s)	977
SinI	GGWCC	3 cut(s)	107, 577, 656
SmaI	CCCGGG	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	8 cut(s)	46, 113, 251, 289, 636, 812, 967, 976
SsiI	CCGC	1 cut(s)	466
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	2 cut(s)	353, 492
StyD4I	CCNGG	5 cut(s)	67, 103, 647, 648, 688
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	3 cut(s)	399, 411, 826
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	1 cut(s)	955
TasI	AATT	8 cut(s)	46, 113, 251, 289, 636, 812, 967, 976
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	181, 800
Tru1I	TTAA	3 cut(s)	116, 831, 1038
Tru9I	TTAA	3 cut(s)	116, 831, 1038
TscAI	CASTG	3 cut(s)	301, 416, 467
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	17, 779
TspGWI	ACGGA	1 cut(s)	384
TspMI	CCCGGG	1 cut(s)	648
TspRI	CASTG	3 cut(s)	301, 416, 467
VpaK11BI	GGWCC	3 cut(s)	107, 577, 656
XapI	RAATTY	3 cut(s)	251, 636, 812
XceI	RCATGY	3 cut(s)	278, 475, 536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XmaI	CCCGGG	1 cut(s)	648
XmaJI	CCTAGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	353, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.