Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Reverse (-)

19033889 .. 19039582

Gene Structure 5694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGGCTGCTATACAGATTAAGAATCTTCTATACGTGTTTGCTGGATACGGTACAATTGATTATTGATAATACATGGGGAGGAAGATTTGATATGCCAAAAGAAATGGCACATTCTCATCTAGGAATGGTAACTGATGGAAGGTACATATACATTGTCAATGGACAGTATGGGCCACAGTGCAGAGGGCCCACATCTCATACATTCATCCTTGATACTGAGACAAAGAAGTGGCAGAATATGCCCCCATTACCAGTTCCAAGGTATGCACCAGCAACTCAACTTTGGAGAGGTAGACTCCATGTAATGGGCGGTAGCAAGGAAAATCGACATACACCTGCAGTAGACCATTGGAGTCTTGCTGTAAAAGATGGAAAAGCATTAGAAAAGGAATGGAGGACTGAAGTGCCTATTCCCAAGGGAGGGCCTCATAGGGCTTCTATAGTTTATAATGATCGTCTTTATGTAATGGGTGGTCAAGAGGGTGATTTCATGGCAAAACCTGGATCACCTATTTTCAAGTGCTCCCGTAGGAATGAGGTTGTATATGGCGATGTTTACATGCTGGATGATGAAATGAAGTGGAAAGTGTTACCTCCTATGCCTAAGCCAGATTCCCATATAGAATTTGCTTGGGCTCTTGTTGACAATTCTGTTATTATTGTTGGAGGCACAACAGAGAAGCACCCTATAACTAAGAAGATGGTTTTGGTTGGAGAAATGTTCCAGTTTAACTTCGATACTCTGAACTGGTCAGTCATAGGGAAACTGCCATTTCGAGTTAAAACCACGCTGGTAGGTTTCTGGAAAGGGTGGTTGTATTTCACATCAGGACAGCGGGACAAAGGACCAGAGGATCCAGCACCAAAGAAAGTGATTGGAGAACTGTGGAGAACAAAGTTAAGCCTGGGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

305

Amino Acids

34.82

Weight (kDa)

9.33

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	33 - 224	4.8e-16	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95	PF25210	38 - 168	1.7e-11	FKB95, Kelch-repeats domain
Beta-prop_FBX42	PF13415	41 - 163	5.8e-07	FBX42, beta-propeller domain
Beta-prop_FBX42	PF13415	99 - 253	1.3e-08	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	295, 345
AciI	CCGC	2 cut(s)	312, 838
AclWI	GGATC	3 cut(s)	514, 851, 864
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	2 cut(s)	54, 146
AfiI	CCNNNNNNNGG	3 cut(s)	307, 422, 423
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	502, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	3 cut(s)	514, 851, 864
AoxI	GGCC	3 cut(s)	173, 188, 425
ApaI	GGGCCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	626
AspS9I	GGNCC	5 cut(s)	173, 188, 189, 425, 848
AsuHPI	GGTGA	2 cut(s)	497, 501
AvaII	GGWCC	1 cut(s)	848
BaeGI	GKGCMC	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	856
BanII	GRGCYC	3 cut(s)	192, 640, 914
BauI	CACGAG	1 cut(s)	913
Bbv12I	GWGCWC	1 cut(s)	527
BccI	CCATC	3 cut(s)	131, 365, 697
BciT130I	CCWGG	2 cut(s)	504, 908
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	339, 441
BfuAI	ACCTGC	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	504, 908
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	5 cut(s)	173, 188, 189, 425, 848
BmiI	GGNNCC	2 cut(s)	190, 858
BmrFI	CCNGG	2 cut(s)	504, 908
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu10I	CCTNAGC	1 cut(s)	606
BsaAI	YACGTR	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	260, 417, 907
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 422, 423
Bse1I	ACTGG	3 cut(s)	254, 727, 755
BseBI	CCWGG	2 cut(s)	504, 908
BseDI	CCNNGG	3 cut(s)	260, 417, 907
BseGI	GGATG	2 cut(s)	207, 574
BseLI	CCNNNNNNNGG	3 cut(s)	307, 422, 423
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	254, 727, 755
BseSI	GKGCMC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	175, 190, 427
BsiHKAI	GWGCWC	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	307, 422, 423
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	854
BsnI	GGCC	3 cut(s)	175, 190, 427
Bsp120I	GGGCCC	1 cut(s)	188
Bsp1286I	GDGCHC	4 cut(s)	192, 527, 640, 914
Bsp143I	GATC	3 cut(s)	454, 506, 856
BspACI	CCGC	2 cut(s)	312, 838
BspANI	GGCC	3 cut(s)	175, 190, 427
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	190, 858
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	3 cut(s)	514, 851, 864
BsrI	ACTGG	3 cut(s)	254, 727, 755
BssECI	CCNNGG	3 cut(s)	260, 417, 907
BssMI	GATC	3 cut(s)	454, 506, 856
BssSI	CACGAG	1 cut(s)	913
BssT1I	CCWWGG	2 cut(s)	260, 417
Bst2BI	CACGAG	1 cut(s)	913
Bst2UI	CCWGG	2 cut(s)	504, 908
Bst4CI	ACNGT	4 cut(s)	52, 168, 180, 888
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	219, 606, 696
BstF5I	GGATG	2 cut(s)	207, 574
BstKTI	GATC	3 cut(s)	457, 509, 859
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	454, 506, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	2 cut(s)	504, 908
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	502, 906
BstSFI	CTRYAG	2 cut(s)	339, 441
BstSLI	GKGCMC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	175, 190, 427
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	207, 574
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	346
Cfr13I	GGNCC	5 cut(s)	173, 188, 189, 425, 848
Csp6I	GTAC	2 cut(s)	53, 145
CviAII	CATG	4 cut(s)	75, 302, 493, 562
CviJI	RGCY	9 cut(s)	7, 175, 190, 427, 437, 610, 638, 906, 912
CviKI_1	RGCY	9 cut(s)	7, 175, 190, 427, 437, 610, 638, 906, 912
CviQI	GTAC	2 cut(s)	53, 145
DdeI	CTNAG	3 cut(s)	219, 606, 696
DpnI	GATC	3 cut(s)	456, 508, 858
DpnII	GATC	3 cut(s)	454, 506, 856
Eco130I	CCWWGG	2 cut(s)	260, 417
Eco24I	GRGCYC	3 cut(s)	192, 640, 914
Eco47I	GGWCC	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	188, 425
EcoRII	CCWGG	2 cut(s)	502, 906
EcoT14I	CCWWGG	2 cut(s)	260, 417
EcoT38I	GRGCYC	3 cut(s)	192, 640, 914
ErhI	CCWWGG	2 cut(s)	260, 417
FaeI	CATG	4 cut(s)	78, 305, 496, 565
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	4 cut(s)	74, 301, 492, 561
FauI	CCCGC	1 cut(s)	831
FblI	GTMKAC	2 cut(s)	295, 345
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	2 cut(s)	194, 581
FriOI	GRGCYC	3 cut(s)	192, 640, 914
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	175, 190, 427
Hin1II	CATG	4 cut(s)	78, 305, 496, 565
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	4 cut(s)	24, 297, 355, 614
HphI	GGTGA	2 cut(s)	497, 501
Hpy166II	GTNNAC	4 cut(s)	296, 346, 559, 646
Hpy188I	TCNGA	1 cut(s)	747
Hpy188III	TCNNGA	4 cut(s)	479, 805, 831, 915
Hpy8I	GTNNAC	4 cut(s)	296, 346, 559, 646
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	4 cut(s)	52, 168, 180, 888
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	183, 269, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	3 cut(s)	219, 606, 696
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	78, 305, 496, 565
Kzo9I	GATC	3 cut(s)	454, 506, 856
LmnI	GCTCC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	130, 591
MalI	GATC	3 cut(s)	456, 508, 858
MboI	GATC	3 cut(s)	454, 506, 856
MboII	GAAGA	3 cut(s)	19, 96, 712
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	4 cut(s)	192, 527, 640, 914
MluCI	AATT	3 cut(s)	56, 626, 649
MlyI	GAGTC	2 cut(s)	291, 364
MmeI	TCCRAC	2 cut(s)	646, 694
MseI	TTAA	4 cut(s)	20, 732, 783, 902
MspA1I	CMGCKG	1 cut(s)	838
MspR9I	CCNGG	2 cut(s)	504, 908
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	504, 908
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	3 cut(s)	454, 506, 856
NlaIII	CATG	4 cut(s)	78, 305, 496, 565
NlaIV	GGNNCC	2 cut(s)	190, 858
NspI	RCATGY	1 cut(s)	565
PaqCI	CACCTGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	24, 614
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	2 cut(s)	291, 363
PpsI	GAGTC	2 cut(s)	291, 363
Ppu21I	YACGTR	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	502, 906
PspGI	CCWGG	2 cut(s)	502, 906
PspN4I	GGNNCC	2 cut(s)	190, 858
PspOMI	GGGCCC	1 cut(s)	188
PspPI	GGNCC	5 cut(s)	173, 188, 189, 425, 848
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	2 cut(s)	54, 146
RsaNI	GTAC	2 cut(s)	53, 145
SaqAI	TTAA	4 cut(s)	20, 732, 783, 902
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	454, 506, 856
Sau96I	GGNCC	5 cut(s)	173, 188, 189, 425, 848
SchI	GAGTC	2 cut(s)	291, 364
ScrFI	CCNGG	2 cut(s)	504, 908
SduI	GDGCHC	4 cut(s)	192, 527, 640, 914
SfcI	CTRYAG	2 cut(s)	339, 441
SinI	GGWCC	1 cut(s)	848
Sse9I	AATT	3 cut(s)	56, 626, 649
SsiI	CCGC	2 cut(s)	312, 838
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	502, 906
StyI	CCWWGG	2 cut(s)	260, 417
TaaI	ACNGT	4 cut(s)	52, 168, 180, 888
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	328, 738, 778
TasI	AATT	3 cut(s)	56, 626, 649
TfiI	GAWTC	2 cut(s)	24, 614
Tru1I	TTAA	4 cut(s)	20, 732, 783, 902
Tru9I	TTAA	4 cut(s)	20, 732, 783, 902
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	4 cut(s)	196, 481, 588, 593
TspRI	CASTG	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	848
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	295, 345
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.