Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Reverse (-)

1507179 .. 1514041

Gene Structure 6863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G020700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGTTAGGCCCTCTGCGAAGCACACATCGGCTCGCTTGGTGTTGATATGCGTTGGCCTATTGGGGCTTGCTCTGATTGCTGATTTCCTCTCAGCTTCCTCGCCTCGTTTTGCTAATTCCTATATCTCCATTGCCTCCAATTGGGCTCCTCCCCTTGATATTTCAAAACCCAGTCTGATCCTCACACCCAAGAAGACTGACGATGAGGTACCCGAAAAGGGAAATCATAAAAACGATACTGCTCATGGGAGAGTTTTATCAGCAACTTTTGCTGATTTGCCTGGACCAGAATTAAAATGGGAAAATATGGCTGCCGCACCTGTAGCTCGCTTGGATGGGGCGGCTATACAGATAAAGAATCTTCTATTCGTGTTTGCTGGATACGGTACCATTGATTATGTACATTCACATGTTGATATCTACAATTTCAGTGATAATACATGGGGAGGAAGATTTGATATGCCAAAAGAAATGGCACATTCACATCTAGGAATGGTAACTGATGGAAGGTACATATACATTGTCACAGGACAGTATGGGCCACAGTGCAGAGGGCCCACTGCCCACACATTCGTGCTTGATACTGAGACAAAGCAGTGGCGGGACATGCCTCCTTTACCAGTTCCTAGGTATGCACCAGCAACTCAACTTTGGAGAGGTAGACTTCATGTAATGGGTGGTAGCAAAGAGAATCGATATACACCTGGAGTAGATCATTGGAGTCTTGCTGTTAAAGATGGAAAAGCATTAGAAAAGGAATGGAGGACTGAAATGCCTATTCCCAGGGGTGGACCTCATAGGGCTTGTATAGTTGTTGATGATCGTCTTTATCTTATTGGTGGTCAAGAGGGTGATTTCATGGCCAAACCTGGATCACCTATTTTCAAGTGCTCTCGCAGGAATGAGGTTGTATATGGTGATGTTTACATGCTAGATGACGAAATGAAGTGGAAAGTGTTACCTCCCATGCCTAAACCAGATTCCCATATCGAATTTGCTTGGGTTGTTGTTAACAATTCTATTGTTATTGTTGGAGGCACAACAGAGAAGCACCCTGTGACTAAGAAGATGACTTTGGTTGGAGAAATATTCCAGTTTAACTTGAATACACTGAACTGGTCAGTTCTTGGGAAACTACCATTTCGAGTTAAAACCACACTAGTTGGCTTCTGGAATGGGTGGTTGTATTTTACATCAGGGCAGCGAGACAAAGGACCAGAGAATCCAGCACCAAAGAAGGTCATCGGAGAGTTGTGGAGAACGAAGTTAAAATTGAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

428

Amino Acids

47.72

Weight (kDa)

9.18

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	208, 386
AccB1I	GGYRCC	2 cut(s)	208, 386
AccI	GTMKAC	1 cut(s)	661
AciI	CCGC	3 cut(s)	315, 341, 601
AclWI	GGATC	2 cut(s)	172, 880
AcoI	YGGCCR	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	992
AdeI	CACNNNGTG	1 cut(s)	1057
AfaI	GTAC	4 cut(s)	210, 388, 402, 512
AfiI	CCNNNNNNNGG	3 cut(s)	141, 218, 788
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	165, 886, 1105
AhlI	ACTAGT	1 cut(s)	1159
AjnI	CCWGG	4 cut(s)	280, 703, 782, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	1058, 1090
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	95, 326, 1278
AluI	AGCT	3 cut(s)	95, 326, 1278
Alw21I	GWGCWC	2 cut(s)	893, 1280
Alw26I	GTCTC	2 cut(s)	581, 1200
AlwI	GGATC	2 cut(s)	172, 880
AoxI	GGCC	5 cut(s)	8, 55, 539, 554, 861
ApaI	GGGCCC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	311, 1201
ApoI	RAATTY	1 cut(s)	992
Asp718I	GGTACC	2 cut(s)	208, 386
AspA2I	CCTAGG	1 cut(s)	626
AspS9I	GGNCC	7 cut(s)	9, 284, 539, 554, 555, 791, 1214
AsuHPI	GGTGA	3 cut(s)	863, 867, 929
AvaII	GGWCC	3 cut(s)	284, 791, 1214
AvrII	CCTAGG	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	863
BanI	GGYRCC	2 cut(s)	208, 386
BanII	GRGCYC	3 cut(s)	148, 558, 1280
BauI	CACGAG	1 cut(s)	1279
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	893, 1280
BbvI	GCAGC	2 cut(s)	298, 1213
BccI	CCATC	3 cut(s)	329, 497, 731
BciT130I	CCWGG	4 cut(s)	282, 705, 784, 870
BciVI	GTATCC	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	581, 1200
BcuI	ACTAGT	1 cut(s)	1159
BfaI	CTAG	4 cut(s)	488, 627, 932, 1160
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	4 cut(s)	312, 315, 342, 1202
BlnI	CCTAGG	1 cut(s)	626
BlsI	GCNGC	4 cut(s)	313, 316, 343, 1203
Bme1390I	CCNGG	4 cut(s)	282, 705, 784, 870
Bme18I	GGWCC	3 cut(s)	284, 791, 1214
BmgT120I	GGNCC	7 cut(s)	9, 284, 539, 554, 555, 791, 1214
BmiI	GGNNCC	4 cut(s)	147, 210, 388, 556
BmrFI	CCNGG	4 cut(s)	282, 705, 784, 870
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	726
Bsa29I	ATCGAT	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	626, 782, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 218, 788
Bse1I	ACTGG	4 cut(s)	171, 620, 1093, 1121
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	4 cut(s)	282, 705, 784, 870
BseCI	ATCGAT	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	626, 782, 783
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	141, 218, 788
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	105, 576
BseNI	ACTGG	4 cut(s)	171, 620, 1093, 1121
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	2 cut(s)	298, 1213
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	5 cut(s)	10, 57, 541, 556, 863
BshNI	GGYRCC	2 cut(s)	208, 386
BshVI	ATCGAT	1 cut(s)	694
BsiHKAI	GWGCWC	2 cut(s)	893, 1280
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	3 cut(s)	141, 218, 788
BsmAI	GTCTC	2 cut(s)	581, 1200
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	5 cut(s)	10, 57, 541, 556, 863
Bsp120I	GGGCCC	1 cut(s)	554
Bsp1286I	GDGCHC	4 cut(s)	148, 558, 893, 1280
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	177, 712, 820, 872
BspACI	CCGC	3 cut(s)	315, 341, 601
BspANI	GGCC	5 cut(s)	10, 57, 541, 556, 863
BspCNI	CTCAG	2 cut(s)	104, 577
BspDI	ATCGAT	1 cut(s)	694
BspLI	GGNNCC	4 cut(s)	147, 210, 388, 556
BspPI	GGATC	2 cut(s)	172, 880
BspT107I	GGYRCC	2 cut(s)	208, 386
BsrDI	GCAATG	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	4 cut(s)	171, 620, 1093, 1121
BssECI	CCNNGG	3 cut(s)	626, 782, 783
BssMI	GATC	4 cut(s)	177, 712, 820, 872
BssSI	CACGAG	1 cut(s)	1279
BssT1I	CCWWGG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	1279
Bst2UI	CCWGG	4 cut(s)	282, 705, 784, 870
Bst4CI	ACNGT	3 cut(s)	386, 534, 546
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	34, 69, 328
BstDEI	CTNAG	3 cut(s)	91, 585, 1062
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	4 cut(s)	180, 715, 823, 875
BstMAI	GTCTC	2 cut(s)	581, 1200
BstMBI	GATC	4 cut(s)	177, 712, 820, 872
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 269, 323, 607
BstNI	CCWGG	4 cut(s)	282, 705, 784, 870
BstNSI	RCATGY	3 cut(s)	413, 610, 931
BstSCI	CCNGG	4 cut(s)	280, 703, 782, 868
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	298, 1213
BstV2I	GAAGAC	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	5 cut(s)	10, 57, 541, 556, 863
BsuTUI	ATCGAT	1 cut(s)	694
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	2 cut(s)	558, 602
BtsIMutI	CAGTG	5 cut(s)	436, 551, 558, 602, 1109
Cac8I	GCNNGC	3 cut(s)	34, 69, 328
Cfr13I	GGNCC	7 cut(s)	9, 284, 539, 554, 555, 791, 1214
ClaI	ATCGAT	1 cut(s)	694
Csp6I	GTAC	4 cut(s)	209, 387, 401, 511
CspCI	CAANNNNNGTGG	2 cut(s)	1144, 1179
CviAII	CATG	8 cut(s)	245, 410, 441, 607, 668, 859, 928, 967
CviQI	GTAC	4 cut(s)	209, 387, 401, 511
DdeI	CTNAG	3 cut(s)	91, 585, 1062
DpnI	GATC	4 cut(s)	179, 714, 822, 874
DpnII	GATC	4 cut(s)	177, 712, 820, 872
DraIII	CACNNNGTG	1 cut(s)	1057
EaeI	YGGCCR	1 cut(s)	861
Ecl136II	GAGCTC	1 cut(s)	1278
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	3 cut(s)	148, 558, 1280
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	3 cut(s)	284, 791, 1214
Eco53kI	GAGCTC	1 cut(s)	1278
EcoICRI	GAGCTC	1 cut(s)	1278
EcoO109I	RGGNCCY	2 cut(s)	9, 554
EcoRII	CCWGG	4 cut(s)	280, 703, 782, 868
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	626
EcoT38I	GRGCYC	3 cut(s)	148, 558, 1280
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	8 cut(s)	248, 413, 444, 610, 671, 862, 931, 970
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	8 cut(s)	244, 409, 440, 606, 667, 858, 927, 966
FauI	CCCGC	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	312, 315, 342, 1202
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	3 cut(s)	148, 558, 1280
Fsp4HI	GCNGC	4 cut(s)	312, 315, 342, 1202
FspBI	CTAG	4 cut(s)	488, 627, 932, 1160
GluI	GCNGC	4 cut(s)	312, 315, 342, 1202
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	5 cut(s)	10, 57, 541, 556, 863
Hin1II	CATG	8 cut(s)	248, 413, 444, 610, 671, 862, 931, 970
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HinfI	GANTC	5 cut(s)	358, 691, 721, 980, 1222
HpaI	GTTAAC	1 cut(s)	1012
HphI	GGTGA	3 cut(s)	863, 867, 929
Hpy166II	GTNNAC	4 cut(s)	662, 791, 925, 1012
Hpy188I	TCNGA	3 cut(s)	75, 177, 1247
Hpy188III	TCNNGA	3 cut(s)	845, 1171, 1281
Hpy8I	GTNNAC	4 cut(s)	662, 791, 925, 1012
HpyAV	CCTTC	2 cut(s)	501, 1231
HpyCH4III	ACNGT	3 cut(s)	386, 534, 546
HpyCH4V	TGCA	2 cut(s)	549, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 269, 323, 607
HpyF3I	CTNAG	3 cut(s)	91, 585, 1062
Hsp92II	CATG	8 cut(s)	248, 413, 444, 610, 671, 862, 931, 970
KpnI	GGTACC	2 cut(s)	212, 390
KspAI	GTTAAC	1 cut(s)	1012
Kzo9I	GATC	4 cut(s)	177, 712, 820, 872
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	298, 1213
MaeI	CTAG	4 cut(s)	488, 627, 932, 1160
MaeIII	GTNAC	4 cut(s)	496, 523, 957, 1057
MalI	GATC	4 cut(s)	179, 714, 822, 874
MboI	GATC	4 cut(s)	177, 712, 820, 872
MboII	GAAGA	4 cut(s)	205, 353, 462, 1078
MfeI	CAATTG	1 cut(s)	139
MhlI	GDGCHC	4 cut(s)	148, 558, 893, 1280
MlsI	TGGCCA	1 cut(s)	863
MluCI	AATT	7 cut(s)	115, 139, 290, 424, 992, 1015, 1271
MluNI	TGGCCA	1 cut(s)	863
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	2 cut(s)	1012, 1060
Mox20I	TGGCCA	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	6 cut(s)	293, 732, 1011, 1098, 1149, 1268
MslI	CAYNNNNRTG	2 cut(s)	408, 572
Msp20I	TGGCCA	1 cut(s)	863
MspR9I	CCNGG	4 cut(s)	282, 705, 784, 870
MunI	CAATTG	1 cut(s)	139
MvaI	CCWGG	4 cut(s)	282, 705, 784, 870
MwoI	GCNNNNNNNGC	4 cut(s)	77, 269, 323, 607
NdeII	GATC	4 cut(s)	177, 712, 820, 872
NlaIII	CATG	8 cut(s)	248, 413, 444, 610, 671, 862, 931, 970
NlaIV	GGNNCC	4 cut(s)	147, 210, 388, 556
NmuCI	GTSAC	2 cut(s)	523, 1057
NspI	RCATGY	3 cut(s)	413, 610, 931
OliI	CACNNNNGTG	1 cut(s)	572
PasI	CCCWGGG	1 cut(s)	783
PciI	ACATGT	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	358, 691, 980, 1222
PkrI	GCNGC	4 cut(s)	313, 316, 343, 1203
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
PscI	ACATGT	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	1280
Psp6I	CCWGG	4 cut(s)	280, 703, 782, 868
PspGI	CCWGG	4 cut(s)	280, 703, 782, 868
PspN4I	GGNNCC	4 cut(s)	147, 210, 388, 556
PspOMI	GGGCCC	1 cut(s)	554
PspPI	GGNCC	7 cut(s)	9, 284, 539, 554, 555, 791, 1214
RsaI	GTAC	4 cut(s)	210, 388, 402, 512
RsaNI	GTAC	4 cut(s)	209, 387, 401, 511
RseI	CAYNNNNRTG	2 cut(s)	408, 572
SacI	GAGCTC	1 cut(s)	1280
SaqAI	TTAA	6 cut(s)	293, 732, 1011, 1098, 1149, 1268
SatI	GCNGC	4 cut(s)	312, 315, 342, 1202
Sau3AI	GATC	4 cut(s)	177, 712, 820, 872
Sau96I	GGNCC	7 cut(s)	9, 284, 539, 554, 555, 791, 1214
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	4 cut(s)	282, 705, 784, 870
SduI	GDGCHC	4 cut(s)	148, 558, 893, 1280
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	3 cut(s)	284, 791, 1214
SmiMI	CAYNNNNRTG	2 cut(s)	408, 572
SpeI	ACTAGT	1 cut(s)	1159
Sse9I	AATT	7 cut(s)	115, 139, 290, 424, 992, 1015, 1271
SsiI	CCGC	3 cut(s)	315, 341, 601
SspI	AATATT	1 cut(s)	1089
SspMI	CTAG	4 cut(s)	488, 627, 932, 1160
SstI	GAGCTC	1 cut(s)	1280
StyD4I	CCNGG	4 cut(s)	280, 703, 782, 868
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	3 cut(s)	386, 534, 546
TaqI	TCGA	3 cut(s)	694, 990, 1144
TasI	AATT	7 cut(s)	115, 139, 290, 424, 992, 1015, 1271
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	2 cut(s)	317, 344
TfiI	GAWTC	4 cut(s)	358, 691, 980, 1222
Tru1I	TTAA	6 cut(s)	293, 732, 1011, 1098, 1149, 1268
Tru9I	TTAA	6 cut(s)	293, 732, 1011, 1098, 1149, 1268
TscAI	CASTG	5 cut(s)	436, 551, 565, 602, 1116
TseFI	GTSAC	2 cut(s)	523, 1057
TseI	GCWGC	2 cut(s)	311, 1201
Tsp45I	GTSAC	2 cut(s)	523, 1057
TspDTI	ATGAA	3 cut(s)	656, 847, 959
TspRI	CASTG	5 cut(s)	436, 551, 565, 602, 1116
VpaK11BI	GGWCC	3 cut(s)	284, 791, 1214
XapI	RAATTY	1 cut(s)	992
XceI	RCATGY	3 cut(s)	413, 610, 931
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XmaJI	CCTAGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	661
XspI	CTAG	4 cut(s)	488, 627, 932, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.