Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Forward (+)

69335980 .. 69341951

Gene Structure 5972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG474400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGTTAGAGCAGCTGGGAAGCACACATCGGCTCGTTTGGTCTTGATTTGCGTTGGCCTTCTGGGTATTGCTCTCATTGCTGATTTCCTCTGGGCTTCTTCTTCTTCTCGTTTTGCTCTCATTGGCGCCAATTGGGCTCCTCCTGTTTCGATCCTCACCCCCATAACCATACCCAACAAGGGAGTAGACAGTCAAAAGAACAATACAACTACTGGGAGGGTTTTGTCTGCAACTTTTGCTGATTTGCCTGCACCAGAACTAAAATGGGAAAAGATGGCTGCCGCACCTGTGCCTCGTTTGGATGGGGCTGCTATACAGATTAAGAATCTTCTATACGTGTTTGCTGGATACGGTACAATTGATTATGTACATTCACATGTTGACATCTACAATTTCAGTGATAATACATGGGGAGGAAGATTTGATATGCCGAAAGAAATGGCACATTCTCATCTAGGAATGGTAACCGATGGAAGGTACATATACATTGTCAATGGACAGTATGGGCCACAGTGCAGAGGCCCCACATCTCATACATTCATCCTTGATACTGAGACAAAGAAGTGGCAGAATATGCCCCCATTACCAGTTCCAAGGTATGCACCAGCAACTCAACTTTGGAGAGGTAGACTACATGTAATGGGCGGTAGCAAGGAAAATCGACATACACCTGCAGTAGACCATTGGAGTCTTGCTGTAAAAGATGGAAAAGCATTAGAAAAGGAATGGAGGACTGAAGTGCCTATTCCCAAGGGAGGACCTCATAGGGCTTCTATAGTTTATAATGATCGTCTTTATGTTATGGGTGGTCAAGAGGGTGATTTCATGGCAAAACCTGGATCACCTATTTTCAAGTGCTCTCGTAGGAATGAGGTTGTATATGGCGATGTTTACATGCTGGATGATGAAATGAAGTGGAAAGTGTTACCTCCTATGCCTAAGCCAGATTCCCATATTGAATTTGCTTGGGCTCTTGTTGACAATTCTGTTATTATTGTTGGAGGCACAACAGAGAAGCACCCTATAACTAAGAAGATGGTTTTGGTTGGAGAAATGTTCCAGTTTAACTTCGATACTCTGGTATTGGCTCTTTCCTCTTGTATTTTTAAGAAGCCAAACAAAATAGTTATTACATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

379

Amino Acids

42.1

Weight (kDa)

9.16

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	87 - 193	2.5e-08	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	90 - 234	5.4e-07	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	108 - 275	3.6e-09	Attractin/LZTR1 beta-propeller
Kelch_FKB95	PF25210	149 - 279	2.7e-11	FKB95, Kelch-repeats domain
Beta-prop_FBX42	PF13415	152 - 274	9.8e-07	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	196 - 335	1.9e-10	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	210 - 361	4.1e-07	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	783
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	3 cut(s)	186, 628, 678
AciI	CCGC	2 cut(s)	282, 645
AclWI	GGATC	2 cut(s)	145, 847
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	355, 369, 479
AfiI	CCNNNNNNNGG	3 cut(s)	179, 474, 755
AflIII	ACRYGT	3 cut(s)	336, 376, 634
AgsI	TTSAA	2 cut(s)	853, 959
AjnI	CCWGG	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	860
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	145, 847
AoxI	GGCC	3 cut(s)	55, 506, 520
ApeKI	GCWGC	3 cut(s)	11, 278, 308
ApoI	RAATTY	1 cut(s)	959
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	506, 521, 758
AsuHPI	GGTGA	3 cut(s)	148, 830, 834
AvaII	GGWCC	1 cut(s)	758
BaeI	ACNNNNGTAYC	2 cut(s)	1065, 1098
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	139, 973
Bbv12I	GWGCWC	1 cut(s)	860
BbvI	GCAGC	3 cut(s)	23, 265, 295
BccI	CCATC	5 cut(s)	268, 296, 464, 698, 1030
BciT130I	CCWGG	1 cut(s)	837
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	2 cut(s)	672, 774
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	4 cut(s)	12, 279, 282, 309
BlsI	GCNGC	4 cut(s)	13, 280, 283, 310
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	506, 521, 758
BmiI	GGNNCC	3 cut(s)	127, 138, 523
BmrFI	CCNGG	1 cut(s)	837
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	939
BsaAI	YACGTR	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	593, 750
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 474, 755
Bse1I	ACTGG	3 cut(s)	217, 587, 1060
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	593, 750
BseGI	GGATG	3 cut(s)	307, 540, 907
BseLI	CCNNNNNNNGG	3 cut(s)	179, 474, 755
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	217, 587, 1060
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	23, 265, 295
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	2 cut(s)	234, 535
BshFI	GGCC	3 cut(s)	57, 508, 522
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	860
BslI	CCNNNNNNNGG	3 cut(s)	179, 474, 755
BsmAI	GTCTC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	57, 508, 522
Bsp1286I	GDGCHC	3 cut(s)	139, 860, 973
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	150, 787, 839
BspACI	CCGC	2 cut(s)	282, 645
BspANI	GGCC	3 cut(s)	57, 508, 522
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	3 cut(s)	127, 138, 523
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	2 cut(s)	145, 847
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	217, 587, 1060
BssECI	CCNNGG	2 cut(s)	593, 750
BssMI	GATC	3 cut(s)	150, 787, 839
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	593, 750
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	4 cut(s)	191, 353, 501, 513
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	2 cut(s)	236, 574
BstAUI	TGTACA	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	552, 939, 1029
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	3 cut(s)	307, 540, 907
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	153, 790, 842
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	3 cut(s)	150, 787, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 134, 236, 574
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	3 cut(s)	380, 638, 898
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	835
BstSFI	CTRYAG	2 cut(s)	672, 774
BstV1I	GCAGC	3 cut(s)	23, 265, 295
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	57, 508, 522
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	3 cut(s)	307, 540, 907
BtsIMutI	CAGTG	2 cut(s)	403, 518
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	506, 521, 758
Csp6I	GTAC	3 cut(s)	354, 368, 478
CviAII	CATG	5 cut(s)	377, 408, 635, 826, 895
CviQI	GTAC	3 cut(s)	354, 368, 478
DdeI	CTNAG	3 cut(s)	552, 939, 1029
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	152, 789, 841
DpnII	GATC	3 cut(s)	150, 787, 839
Eco130I	CCWWGG	2 cut(s)	593, 750
Eco24I	GRGCYC	2 cut(s)	139, 973
Eco47I	GGWCC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	756
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	521, 758
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	835
EcoT14I	CCWWGG	2 cut(s)	593, 750
EcoT38I	GRGCYC	2 cut(s)	139, 973
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	593, 750
FaeI	CATG	5 cut(s)	380, 411, 638, 829, 898
FatI	CATG	5 cut(s)	376, 407, 634, 825, 894
FblI	GTMKAC	3 cut(s)	186, 628, 678
Fnu4HI	GCNGC	4 cut(s)	12, 279, 282, 309
FokI	GGATG	3 cut(s)	314, 527, 914
FriOI	GRGCYC	2 cut(s)	139, 973
Fsp4HI	GCNGC	4 cut(s)	12, 279, 282, 309
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	12, 279, 282, 309
GsaI	CCCAGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	57, 508, 522
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	5 cut(s)	380, 411, 638, 829, 898
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	2 cut(s)	382, 979
HindII	GTYRAC	2 cut(s)	382, 979
HinfI	GANTC	3 cut(s)	325, 688, 947
HphI	GGTGA	3 cut(s)	148, 830, 834
Hpy166II	GTNNAC	6 cut(s)	187, 382, 629, 679, 892, 979
Hpy188III	TCNNGA	2 cut(s)	43, 812
Hpy8I	GTNNAC	6 cut(s)	187, 382, 629, 679, 892, 979
HpyAV	CCTTC	2 cut(s)	68, 468
HpyCH4III	ACNGT	4 cut(s)	191, 353, 501, 513
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	5 cut(s)	230, 251, 516, 602, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 134, 236, 574
HpyF3I	CTNAG	3 cut(s)	552, 939, 1029
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	380, 411, 638, 829, 898
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	150, 787, 839
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	23, 265, 295
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	463, 924
MalI	GATC	3 cut(s)	152, 789, 841
MboI	GATC	3 cut(s)	150, 787, 839
MboII	GAAGA	6 cut(s)	90, 93, 96, 320, 429, 1045
MfeI	CAATTG	2 cut(s)	130, 357
MhlI	GDGCHC	3 cut(s)	139, 860, 973
MluCI	AATT	5 cut(s)	130, 357, 391, 959, 982
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	2 cut(s)	979, 1027
MseI	TTAA	3 cut(s)	321, 1065, 1107
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	837
MunI	CAATTG	2 cut(s)	130, 357
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	77, 134, 236, 574
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	3 cut(s)	150, 787, 839
NlaIII	CATG	5 cut(s)	380, 411, 638, 829, 898
NlaIV	GGNNCC	3 cut(s)	127, 138, 523
NspI	RCATGY	3 cut(s)	380, 638, 898
PaqCI	CACCTGC	1 cut(s)	679
PciI	ACATGT	2 cut(s)	376, 634
PfeI	GAWTC	2 cut(s)	325, 947
PkrI	GCNGC	4 cut(s)	13, 280, 283, 310
PleI	GAGTC	1 cut(s)	696
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	696
Ppu21I	YACGTR	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	758
PscI	ACATGT	2 cut(s)	376, 634
PsiI	TTATAA	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	835
PspEI	GGTNACC	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	3 cut(s)	127, 138, 523
PspPI	GGNCC	3 cut(s)	506, 521, 758
PspPPI	RGGWCCY	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	355, 369, 479
RsaNI	GTAC	3 cut(s)	354, 368, 478
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	321, 1065, 1107
SatI	GCNGC	4 cut(s)	12, 279, 282, 309
Sau3AI	GATC	3 cut(s)	150, 787, 839
Sau96I	GGNCC	3 cut(s)	506, 521, 758
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	1 cut(s)	837
SduI	GDGCHC	3 cut(s)	139, 860, 973
SfcI	CTRYAG	2 cut(s)	672, 774
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	130, 357, 391, 959, 982
SsiI	CCGC	2 cut(s)	282, 645
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	835
StyI	CCWWGG	2 cut(s)	593, 750
TaaI	ACNGT	4 cut(s)	191, 353, 501, 513
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	149, 661, 1071
TasI	AATT	5 cut(s)	130, 357, 391, 959, 982
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	325, 947
Tru1I	TTAA	3 cut(s)	321, 1065, 1107
Tru9I	TTAA	3 cut(s)	321, 1065, 1107
TscAI	CASTG	2 cut(s)	403, 518
TseI	GCWGC	3 cut(s)	11, 278, 308
TspDTI	ATGAA	4 cut(s)	529, 814, 921, 926
TspRI	CASTG	2 cut(s)	403, 518
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	1 cut(s)	959
XceI	RCATGY	3 cut(s)	380, 638, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XmiI	GTMKAC	3 cut(s)	186, 628, 678
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.