Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Forward (+)

29167742 .. 29173583

Gene Structure 5842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37100.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCTAGAGCAGCAGGGAAGCACACATCGGCTCGTCTGGTGTTGATTTGCGTTGGCCTTCTGGGTGTTGCTCTCATTGCTGATTTCCTCTGGGCTTCTTCTTCTTCTCGTTTTGCTCTCATTTCCCCAAATTGGGCTCCCCCTGTCTCGATCCTCACCCCCATAACCAAACCCAACAAGGGAGTTGACAGCCAAAAGAACAATACTGCTATTGGGAGGGTTTTATCTGCAACTTTTGCCGACTTGCCTGCACCAGAACTAGAATGGCAAAAGATGGCTGCTGCACCTGTTCCTCGTTTGGATGGGGCTGCTATACAGATTAAGAATCTTCTATACGTGTTTGCTGGATACGGTACAATTGATTATGTACATTCACATGTGGACATCTACAATTTCAGTGATAATACATGGGGAGAACGATTTGATATGCCAAAAGAAATGGCACATTCGCATCTAGGAATGGTAACCGATGGAAGGTACATATATATTGTAAATGGACAGTATGGGCCACAGTGCAGAGGGCCCACATCCCATACATTCATCCTTGATACTGAGACAAAGAGGTGGCAGAGTATGCCCCCTTTACCAGTTCCAAGGTATGCACCGGCAACTCAACTTTGGAGAGGTAGACTCCATGTAATGGGTGGTAGCAAGGAGAATCGACATACACCTGCAGTGGATCATTGGAGTCTTGCTGTGAAAGATGGAAAATCATTAGAAAAGGAATGGAGGACTGAAGTGCCTATTCCCAAGGGAGGTCCTCATAGGGCTTGTATAGTTTATAATGATCGTCTTTATGTTATGGGTGGTCAAGAGGGTGATTTCATGGCAAAACCTGGATCCCCTATTTTCAAGTGCTCTCGTAGGAATGAGGTTGTGTATGGCGATGTTTACATGCTGGATGATGAAATGAAGTGGAAAATGTTACCTCCTATGCCTAAGCCAGATTCCCATATTGAATTTGCCTGGGCTATTGTTAACAATTCTGTTATTATTGTTGGAGGCACAACAGAGAAGCACCCTGTAACTAAGAAGATGGTTTTGGTTGGAGAAATGTTCCAGTTTAACTTTGAAACTCTGAACTGGTCAGTCATTGGGAAACTGCCATTTCGAGTTAAAACCACACTAGTGGGTTTCTGGAAAGGGTGGTTGTATTTCACATCAGGACAACGGGATAAAGGACCAGAGGATCCAGCACCAAAGAAAGTGATCGGAGAACTGTGGAGAACAAAATTAAACCTGGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

417

Amino Acids

46.62

Weight (kDa)

9.33

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	61 - 193	3e-10	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	67 - 222	2.4e-09	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	783
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	1 cut(s)	679
AccB7I	CCANNNNNTGG	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	628
AclWI	GGATC	6 cut(s)	145, 687, 834, 847, 1184, 1197
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	3 cut(s)	355, 369, 479
AfiI	CCNNNNNNNGG	6 cut(s)	132, 133, 179, 474, 640, 755
AflIII	ACRYGT	2 cut(s)	336, 376
AgsI	TTSAA	3 cut(s)	853, 959, 1073
AhlI	ACTAGT	1 cut(s)	1126
AjnI	CCWGG	3 cut(s)	835, 965, 1239
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
AleI	CACNNNNGTG	1 cut(s)	1127
Alw21I	GWGCWC	1 cut(s)	860
Alw26I	GTCTC	2 cut(s)	151, 548
AlwI	GGATC	6 cut(s)	145, 687, 834, 847, 1184, 1197
AoxI	GGCC	3 cut(s)	55, 506, 521
ApaI	GGGCCC	1 cut(s)	525
ApeKI	GCWGC	4 cut(s)	11, 278, 281, 308
ApoI	RAATTY	1 cut(s)	959
AspS9I	GGNCC	5 cut(s)	506, 521, 522, 758, 1181
AsuHPI	GGTGA	2 cut(s)	148, 830
AvaII	GGWCC	2 cut(s)	758, 1181
BaeGI	GKGCMC	1 cut(s)	525
BamHI	GGATCC	2 cut(s)	839, 1189
BanII	GRGCYC	2 cut(s)	139, 525
Bbv12I	GWGCWC	1 cut(s)	860
BbvI	GCAGC	4 cut(s)	23, 265, 268, 295
BccI	CCATC	5 cut(s)	268, 296, 464, 698, 1030
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	3 cut(s)	837, 967, 1241
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	151, 548
BcuI	ACTAGT	1 cut(s)	1126
BfaI	CTAG	4 cut(s)	6, 260, 455, 1127
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	341
BisI	GCNGC	4 cut(s)	12, 279, 282, 309
BlsI	GCNGC	4 cut(s)	13, 280, 283, 310
Bme1390I	CCNGG	3 cut(s)	837, 967, 1241
Bme18I	GGWCC	2 cut(s)	758, 1181
BmgT120I	GGNCC	5 cut(s)	506, 521, 522, 758, 1181
BmiI	GGNNCC	4 cut(s)	138, 523, 841, 1191
BmrFI	CCNGG	3 cut(s)	837, 967, 1241
BmsI	GCATC	1 cut(s)	460
BplI	GAGNNNNNCTC	2 cut(s)	615, 647
Bpu10I	CCTNAGC	1 cut(s)	939
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	4 cut(s)	593, 750, 966, 1240
Bsc4I	CCNNNNNNNGG	6 cut(s)	132, 133, 179, 474, 640, 755
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	3 cut(s)	587, 1060, 1088
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	837, 967, 1241
BseDI	CCNNGG	4 cut(s)	593, 750, 966, 1240
BseGI	GGATG	4 cut(s)	307, 527, 540, 907
BseLI	CCNNNNNNNGG	6 cut(s)	132, 133, 179, 474, 640, 755
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	587, 1060, 1088
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	23, 265, 268, 295
BsgI	GTGCAG	3 cut(s)	234, 267, 535
BshFI	GGCC	3 cut(s)	57, 508, 523
BsiHKAI	GWGCWC	1 cut(s)	860
BsiSI	CCGG	1 cut(s)	605
BslI	CCNNNNNNNGG	6 cut(s)	132, 133, 179, 474, 640, 755
BsmAI	GTCTC	2 cut(s)	151, 548
BsnI	GGCC	3 cut(s)	57, 508, 523
Bsp120I	GGGCCC	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	139, 525, 860
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
BspANI	GGCC	3 cut(s)	57, 508, 523
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	4 cut(s)	138, 523, 841, 1191
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	6 cut(s)	145, 687, 834, 847, 1184, 1197
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	604
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	587, 1060, 1088
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	593, 750, 966, 1240
BssMI	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
BssT1I	CCWWGG	2 cut(s)	593, 750
Bst2UI	CCWGG	3 cut(s)	837, 967, 1241
Bst4CI	ACNGT	4 cut(s)	353, 501, 513, 1221
BstAPI	GCANNNNNTGC	2 cut(s)	236, 574
BstAUI	TGTACA	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	552, 939, 1029
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	4 cut(s)	307, 527, 540, 907
BstKTI	GATC	6 cut(s)	153, 682, 790, 842, 1192, 1212
BstMAI	GTCTC	2 cut(s)	151, 548
BstMBI	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 77, 236, 574
BstNI	CCWGG	3 cut(s)	837, 967, 1241
BstNSI	RCATGY	2 cut(s)	380, 898
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	3 cut(s)	835, 965, 1239
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	4 cut(s)	23, 265, 268, 295
BstX2I	RGATCY	2 cut(s)	839, 1189
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstYI	RGATCY	2 cut(s)	839, 1189
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	57, 508, 523
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	4 cut(s)	307, 527, 540, 907
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	3 cut(s)	403, 518, 681
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	5 cut(s)	506, 521, 522, 758, 1181
Csp6I	GTAC	3 cut(s)	354, 368, 478
CviAII	CATG	5 cut(s)	377, 408, 635, 826, 895
CviQI	GTAC	3 cut(s)	354, 368, 478
DdeI	CTNAG	3 cut(s)	552, 939, 1029
DpnI	GATC	6 cut(s)	152, 681, 789, 841, 1191, 1211
DpnII	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
Eco130I	CCWWGG	2 cut(s)	593, 750
Eco24I	GRGCYC	2 cut(s)	139, 525
Eco47I	GGWCC	2 cut(s)	758, 1181
Eco57I	CTGAAG	1 cut(s)	756
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	521, 758
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	835, 965, 1239
EcoT14I	CCWWGG	2 cut(s)	593, 750
EcoT38I	GRGCYC	2 cut(s)	139, 525
ErhI	CCWWGG	2 cut(s)	593, 750
FaeI	CATG	5 cut(s)	380, 411, 638, 829, 898
FatI	CATG	5 cut(s)	376, 407, 634, 825, 894
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	4 cut(s)	12, 279, 282, 309
FokI	GGATG	4 cut(s)	314, 514, 527, 914
FriOI	GRGCYC	2 cut(s)	139, 525
Fsp4HI	GCNGC	4 cut(s)	12, 279, 282, 309
FspBI	CTAG	4 cut(s)	6, 260, 455, 1127
GluI	GCNGC	4 cut(s)	12, 279, 282, 309
HaeIII	GGCC	3 cut(s)	57, 508, 523
HapII	CCGG	1 cut(s)	605
Hin1II	CATG	5 cut(s)	380, 411, 638, 829, 898
HincII	GTYRAC	2 cut(s)	187, 979
HindII	GTYRAC	2 cut(s)	187, 979
HinfI	GANTC	5 cut(s)	325, 630, 658, 688, 947
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	2 cut(s)	148, 830
Hpy166II	GTNNAC	5 cut(s)	187, 382, 629, 892, 979
Hpy188I	TCNGA	2 cut(s)	1080, 1214
Hpy188III	TCNNGA	4 cut(s)	148, 812, 1138, 1164
Hpy8I	GTNNAC	5 cut(s)	187, 382, 629, 892, 979
HpyAV	CCTTC	2 cut(s)	68, 468
HpyCH4III	ACNGT	4 cut(s)	353, 501, 513, 1221
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	6 cut(s)	230, 251, 284, 516, 602, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 77, 236, 574
HpyF3I	CTNAG	3 cut(s)	552, 939, 1029
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	5 cut(s)	380, 411, 638, 829, 898
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	4 cut(s)	23, 265, 268, 295
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	4 cut(s)	6, 260, 455, 1127
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	463, 924, 1024
MalI	GATC	6 cut(s)	152, 681, 789, 841, 1191, 1211
MboI	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
MboII	GAAGA	5 cut(s)	90, 93, 96, 320, 1045
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	839, 1189
MhlI	GDGCHC	3 cut(s)	139, 525, 860
MluCI	AATT	6 cut(s)	130, 357, 391, 959, 982, 1232
MlyI	GAGTC	2 cut(s)	624, 697
MmeI	TCCRAC	2 cut(s)	979, 1027
MseI	TTAA	5 cut(s)	321, 978, 1065, 1116, 1235
MslI	CAYNNNNRTG	2 cut(s)	375, 1127
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	3 cut(s)	837, 967, 1241
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	3 cut(s)	837, 967, 1241
MwoI	GCNNNNNNNGC	4 cut(s)	11, 77, 236, 574
NdeII	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
NlaIII	CATG	5 cut(s)	380, 411, 638, 829, 898
NlaIV	GGNNCC	4 cut(s)	138, 523, 841, 1191
NspI	RCATGY	2 cut(s)	380, 898
OliI	CACNNNNGTG	1 cut(s)	1127
PaqCI	CACCTGC	1 cut(s)	679
PciI	ACATGT	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	325, 658, 947
PflMI	CCANNNNNTGG	1 cut(s)	640
PkrI	GCNGC	4 cut(s)	13, 280, 283, 310
PleI	GAGTC	2 cut(s)	624, 696
PpsI	GAGTC	2 cut(s)	624, 696
Ppu21I	YACGTR	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	758
PscI	ACATGT	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	3 cut(s)	835, 965, 1239
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	3 cut(s)	835, 965, 1239
PspN4I	GGNNCC	4 cut(s)	138, 523, 841, 1191
PspOMI	GGGCCC	1 cut(s)	521
PspPI	GGNCC	5 cut(s)	506, 521, 522, 758, 1181
PspPPI	RGGWCCY	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	676
PsuI	RGATCY	2 cut(s)	839, 1189
RsaI	GTAC	3 cut(s)	355, 369, 479
RsaNI	GTAC	3 cut(s)	354, 368, 478
RseI	CAYNNNNRTG	2 cut(s)	375, 1127
SaqAI	TTAA	5 cut(s)	321, 978, 1065, 1116, 1235
SatI	GCNGC	4 cut(s)	12, 279, 282, 309
Sau3AI	GATC	6 cut(s)	150, 679, 787, 839, 1189, 1209
Sau96I	GGNCC	5 cut(s)	506, 521, 522, 758, 1181
SchI	GAGTC	2 cut(s)	624, 697
ScrFI	CCNGG	3 cut(s)	837, 967, 1241
SduI	GDGCHC	3 cut(s)	139, 525, 860
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	2 cut(s)	758, 1181
SmiMI	CAYNNNNRTG	2 cut(s)	375, 1127
SpeI	ACTAGT	1 cut(s)	1126
Sse9I	AATT	6 cut(s)	130, 357, 391, 959, 982, 1232
SspMI	CTAG	4 cut(s)	6, 260, 455, 1127
StyD4I	CCNGG	3 cut(s)	835, 965, 1239
StyI	CCWWGG	2 cut(s)	593, 750
TaaI	ACNGT	4 cut(s)	353, 501, 513, 1221
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	149, 661, 1111
TasI	AATT	6 cut(s)	130, 357, 391, 959, 982, 1232
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	3 cut(s)	325, 658, 947
Tru1I	TTAA	5 cut(s)	321, 978, 1065, 1116, 1235
Tru9I	TTAA	5 cut(s)	321, 978, 1065, 1116, 1235
TscAI	CASTG	3 cut(s)	403, 518, 681
TseI	GCWGC	4 cut(s)	11, 278, 281, 308
TspDTI	ATGAA	4 cut(s)	529, 814, 921, 926
TspRI	CASTG	3 cut(s)	403, 518, 681
Van91I	CCANNNNNTGG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	758, 1181
XapI	RAATTY	1 cut(s)	959
XceI	RCATGY	2 cut(s)	380, 898
XcmI	CCANNNNNNNNNTGG	2 cut(s)	261, 641
XmiI	GTMKAC	1 cut(s)	628
XspI	CTAG	4 cut(s)	6, 260, 455, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.