Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008313

Physical Location & Seq

Genomic Coordinates Forward (+)

63570698 .. 63576287

Gene Structure 5590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTGAGGATGGTTAGAGCAGCTGGGAAGCACACATCGGCTCGTTTGGTCTTGATTTGCGTTGGCCTTCTGGGTATTGCTCTCATTGCTGATTTCCTCTGGGCTTCTTCTTCTTCTCGTTTTGCTCTCATTGGCGCCAATTGGGCTCCTCCTGTTTCGCTCCTCACCCCCATAACCATACCCAACAAGGGAGTAGACAGTCAAAAGAACAATACAACTACCGCGAGGGTTTTGTCTGCAACTTTTGCTGATTTGCCTGCACCAGAACTAACATGGGAAAAGATGGCTGCCGCACCTGTGCCTCGTTTGGATGGGGCTGCTATACAGATTAAGAATCTTCTATATGTGTTTGCTGGATACGGTACAATTGATTATGTACATTCACATGTTGACATCTACAATTTCAGTGATAATACATGGGGAGGAAGATTTGATATGCCGAAAGAAATGGCACATTCTCATCTAGGAATGGTAACCGATGGAAGGTACATATACATTGTCAATGGACAGTATGGGCCACAGTGCAGAGGCCCCACATCTCATACATTCATCCTTGATACTGAGACAAAGAAGTGGCAGAATATGCCCCCATTACCAGTTCCAAGGTATGCACCAGCAACTCAACTTTGGAGAGGTAGACTACATGTAATGGGCGGTAGCAAGGAAAATCGACATACACCTGCAGTAGACCATTGGAGTCTTGCTGTAAAAGATGGAAAAGCATTAGAAAAGGAATGGAGGACTGAAGTGCCTATTCCCAAGGGAGGACCTCATAGGGCTTCTATAGTTTATAATGATCGTCTTTATGTTATGGGTGGTCAAGAGGGTGATTTCATGGCAAAACCTGGATCACCTATTTTCAAGTGCTCTCGTAGGAATGAGGTTGTATATGGTGATGTTTACATGCTGGATGATGAAATGAAGTGGAAAGTGTTACCTCCTATGCCTAAGCCAGATTCCCATATTGAATTTGCTTGGGCTCTTGTTGACAATTCTGTTATTATTGTTGGAGGCACAACAGAGAAGCACCCTATAACTAAGAAGATGGTTTTGGTTGGAGAAATGTTCCAGTTTAACTTTGACACTCTGAACTGGTCAGTCATAGGGAAACTACCATTTCGAGTTAAAACCACGCTAGTAGGTTTCTGGAAAGGGTGGTTGTATTTCACATCAGGACAGCGGGACAAAGGACCAGAGGATCCAGCACCAAAGAAAGTGATTGGAGAACTGTGGAGAACAAAGTTAAACCTGGGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

419

Amino Acids

46.82

Weight (kDa)

9.37

Isoelectric Point (pI)

27.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	90 - 196	2.3e-08	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	91 - 235	7.8e-07	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	111 - 278	4.4e-09	Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7	PF24681	152 - 338	2.2e-15	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95	PF25210	152 - 282	3.5e-11	FKB95, Kelch-repeats domain
Beta-prop_FBX42	PF13415	155 - 277	1.2e-06	FBX42, beta-propeller domain
Beta-prop_FBX42	PF13415	212 - 367	1.9e-08	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	214 - 368	4.4e-10	KLHDC2/KLHL20/DRC7 Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51540
fragaria_vesca	FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100 FvH4_6g37100
malus_domestica	MD09G1161600.v1.1
prunus_persica	Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1 Prupe.3G020700_v2.0.a1
pyrus_communis	pycom09g08010 pycom09g08060 pycom17g14080 pycom17g14120
rosa_chinensis	RchiOBHm_Chr2g0149661
rosa_laevigata	RLG00000020435
rosa_roxburghii	Rroxscaffold_2G00097820
rosa_rugosa	Rorug02G0414300
rosa_samantha	Rh2AG474400 Rh2BG486100 Rh2DG495400
rosa_wichuraiana	Rw2G038680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
AarI	CACCTGC	1 cut(s)	688
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	3 cut(s)	195, 637, 687
AccII	CGCG	1 cut(s)	224
AciI	CCGC	4 cut(s)	222, 291, 654, 1180
AclWI	GGATC	3 cut(s)	856, 1193, 1206
AcsI	RAATTY	1 cut(s)	968
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	3 cut(s)	364, 378, 488
AfiI	CCNNNNNNNGG	3 cut(s)	188, 483, 764
AflIII	ACRYGT	2 cut(s)	385, 643
AgsI	TTSAA	2 cut(s)	862, 968
AjnI	CCWGG	2 cut(s)	844, 1248
AjuI	GAANNNNNNNTTGG	2 cut(s)	1034, 1066
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	3 cut(s)	856, 1193, 1206
AoxI	GGCC	3 cut(s)	64, 515, 529
ApeKI	GCWGC	3 cut(s)	20, 287, 317
ApoI	RAATTY	1 cut(s)	968
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	4 cut(s)	515, 530, 767, 1190
AsuHPI	GGTGA	5 cut(s)	16, 157, 839, 843, 905
AvaII	GGWCC	2 cut(s)	767, 1190
BamHI	GGATCC	1 cut(s)	1198
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	3 cut(s)	148, 982, 1256
BauI	CACGAG	1 cut(s)	1255
Bbv12I	GWGCWC	1 cut(s)	869
BbvI	GCAGC	3 cut(s)	32, 274, 304
BccI	CCATC	6 cut(s)	4, 277, 305, 473, 707, 1039
BciT130I	CCWGG	2 cut(s)	846, 1250
BciVI	GTATCC	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	2 cut(s)	464, 1136
BfmI	CTRYAG	2 cut(s)	681, 783
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	21, 288, 291, 318
BlsI	GCNGC	4 cut(s)	22, 289, 292, 319
Bme1390I	CCNGG	2 cut(s)	846, 1250
Bme18I	GGWCC	2 cut(s)	767, 1190
BmgT120I	GGNCC	4 cut(s)	515, 530, 767, 1190
BmiI	GGNNCC	4 cut(s)	136, 147, 532, 1200
BmrFI	CCNGG	2 cut(s)	846, 1250
Bpu10I	CCTNAGC	1 cut(s)	948
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	602, 759, 1249
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 483, 764
Bse1I	ACTGG	3 cut(s)	596, 1069, 1097
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	846, 1250
BseDI	CCNNGG	3 cut(s)	602, 759, 1249
BseGI	GGATG	4 cut(s)	15, 316, 549, 916
BseLI	CCNNNNNNNGG	3 cut(s)	188, 483, 764
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	3 cut(s)	596, 1069, 1097
BseRI	GAGGAG	2 cut(s)	138, 152
BseXI	GCAGC	3 cut(s)	32, 274, 304
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	243, 544
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	66, 517, 531
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	869
BslFI	GGGAC	1 cut(s)	1196
BslI	CCNNNNNNNGG	3 cut(s)	188, 483, 764
BsmAI	GTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	1196
BsnI	GGCC	3 cut(s)	66, 517, 531
Bsp1286I	GDGCHC	4 cut(s)	148, 869, 982, 1256
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	796, 848, 1198
BspACI	CCGC	4 cut(s)	222, 291, 654, 1180
BspANI	GGCC	3 cut(s)	66, 517, 531
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	4 cut(s)	136, 147, 532, 1200
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	856, 1193, 1206
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	3 cut(s)	596, 1069, 1097
BssECI	CCNNGG	3 cut(s)	602, 759, 1249
BssMI	GATC	3 cut(s)	796, 848, 1198
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	1255
BssT1I	CCWWGG	2 cut(s)	602, 759
Bst2BI	CACGAG	1 cut(s)	1255
Bst2UI	CCWGG	2 cut(s)	846, 1250
Bst4CI	ACNGT	5 cut(s)	200, 362, 510, 522, 1230
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	2 cut(s)	245, 583
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	561, 948, 1038
BstEII	GGTNACC	1 cut(s)	472
BstF5I	GGATG	4 cut(s)	15, 316, 549, 916
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	799, 851, 1201
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	3 cut(s)	796, 848, 1198
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 143, 245, 583
BstNI	CCWGG	2 cut(s)	846, 1250
BstNSI	RCATGY	3 cut(s)	389, 647, 907
BstPI	GGTNACC	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	844, 1248
BstSFI	CTRYAG	2 cut(s)	681, 783
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	32, 274, 304
BstX2I	RGATCY	1 cut(s)	1198
BstYI	RGATCY	1 cut(s)	1198
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	66, 517, 531
BtsCI	GGATG	4 cut(s)	15, 316, 549, 916
BtsIMutI	CAGTG	2 cut(s)	412, 527
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	4 cut(s)	515, 530, 767, 1190
Csp6I	GTAC	3 cut(s)	363, 377, 487
CviAII	CATG	6 cut(s)	273, 386, 417, 644, 835, 904
CviQI	GTAC	3 cut(s)	363, 377, 487
DdeI	CTNAG	3 cut(s)	561, 948, 1038
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	3 cut(s)	798, 850, 1200
DpnII	GATC	3 cut(s)	796, 848, 1198
Eco130I	CCWWGG	2 cut(s)	602, 759
Eco24I	GRGCYC	3 cut(s)	148, 982, 1256
Eco47I	GGWCC	2 cut(s)	767, 1190
Eco57I	CTGAAG	1 cut(s)	765
Eco91I	GGTNACC	1 cut(s)	472
EcoO109I	RGGNCCY	2 cut(s)	530, 767
EcoO65I	GGTNACC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	844, 1248
EcoT14I	CCWWGG	2 cut(s)	602, 759
EcoT38I	GRGCYC	3 cut(s)	148, 982, 1256
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	602, 759
FaeI	CATG	6 cut(s)	276, 389, 420, 647, 838, 907
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	6 cut(s)	272, 385, 416, 643, 834, 903
FauI	CCCGC	1 cut(s)	1173
FblI	GTMKAC	3 cut(s)	195, 637, 687
Fnu4HI	GCNGC	4 cut(s)	21, 288, 291, 318
FokI	GGATG	4 cut(s)	22, 323, 536, 923
FriOI	GRGCYC	3 cut(s)	148, 982, 1256
Fsp4HI	GCNGC	4 cut(s)	21, 288, 291, 318
FspBI	CTAG	2 cut(s)	464, 1136
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	21, 288, 291, 318
GsaI	CCCAGC	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	66, 517, 531
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	276, 389, 420, 647, 838, 907
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	2 cut(s)	391, 988
HindII	GTYRAC	2 cut(s)	391, 988
HinfI	GANTC	3 cut(s)	334, 697, 956
HphI	GGTGA	5 cut(s)	16, 157, 839, 843, 905
Hpy166II	GTNNAC	6 cut(s)	196, 391, 638, 688, 901, 988
Hpy188I	TCNGA	1 cut(s)	1089
Hpy188III	TCNNGA	5 cut(s)	52, 821, 1147, 1173, 1257
Hpy8I	GTNNAC	6 cut(s)	196, 391, 638, 688, 901, 988
HpyAV	CCTTC	2 cut(s)	77, 477
HpyCH4III	ACNGT	5 cut(s)	200, 362, 510, 522, 1230
HpyCH4V	TGCA	5 cut(s)	239, 260, 525, 611, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 143, 245, 583
HpyF3I	CTNAG	3 cut(s)	561, 948, 1038
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	276, 389, 420, 647, 838, 907
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	796, 848, 1198
LmnI	GCTCC	2 cut(s)	151, 165
Lsp1109I	GCAGC	3 cut(s)	32, 274, 304
MaeI	CTAG	2 cut(s)	464, 1136
MaeIII	GTNAC	2 cut(s)	472, 933
MalI	GATC	3 cut(s)	798, 850, 1200
MboI	GATC	3 cut(s)	796, 848, 1198
MboII	GAAGA	6 cut(s)	99, 102, 105, 329, 438, 1054
MfeI	CAATTG	2 cut(s)	139, 366
MflI	RGATCY	1 cut(s)	1198
MhlI	GDGCHC	4 cut(s)	148, 869, 982, 1256
MluCI	AATT	5 cut(s)	139, 366, 400, 968, 991
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	2 cut(s)	988, 1036
MseI	TTAA	4 cut(s)	330, 1074, 1125, 1244
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	23, 1180
MspR9I	CCNGG	2 cut(s)	846, 1250
MunI	CAATTG	2 cut(s)	139, 366
MvaI	CCWGG	2 cut(s)	846, 1250
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	86, 143, 245, 583
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	3 cut(s)	796, 848, 1198
NlaIII	CATG	6 cut(s)	276, 389, 420, 647, 838, 907
NlaIV	GGNNCC	4 cut(s)	136, 147, 532, 1200
NspI	RCATGY	3 cut(s)	389, 647, 907
PaqCI	CACCTGC	1 cut(s)	688
PciI	ACATGT	2 cut(s)	385, 643
PfeI	GAWTC	2 cut(s)	334, 956
PkrI	GCNGC	4 cut(s)	22, 289, 292, 319
PleI	GAGTC	1 cut(s)	705
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	705
PpuMI	RGGWCCY	1 cut(s)	767
PscI	ACATGT	2 cut(s)	385, 643
PsiI	TTATAA	1 cut(s)	792
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	844, 1248
PspEI	GGTNACC	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	844, 1248
PspN4I	GGNNCC	4 cut(s)	136, 147, 532, 1200
PspPI	GGNCC	4 cut(s)	515, 530, 767, 1190
PspPPI	RGGWCCY	1 cut(s)	767
PstI	CTGCAG	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	1198
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	364, 378, 488
RsaNI	GTAC	3 cut(s)	363, 377, 487
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	330, 1074, 1125, 1244
SatI	GCNGC	4 cut(s)	21, 288, 291, 318
Sau3AI	GATC	3 cut(s)	796, 848, 1198
Sau96I	GGNCC	4 cut(s)	515, 530, 767, 1190
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	846, 1250
SduI	GDGCHC	4 cut(s)	148, 869, 982, 1256
SfcI	CTRYAG	2 cut(s)	681, 783
SfoI	GGCGCC	1 cut(s)	136
SinI	GGWCC	2 cut(s)	767, 1190
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	5 cut(s)	139, 366, 400, 968, 991
SsiI	CCGC	4 cut(s)	222, 291, 654, 1180
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	464, 1136
StyD4I	CCNGG	2 cut(s)	844, 1248
StyI	CCWWGG	2 cut(s)	602, 759
TaaI	ACNGT	5 cut(s)	200, 362, 510, 522, 1230
TaqI	TCGA	2 cut(s)	670, 1120
TasI	AATT	5 cut(s)	139, 366, 400, 968, 991
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	334, 956
Tru1I	TTAA	4 cut(s)	330, 1074, 1125, 1244
Tru9I	TTAA	4 cut(s)	330, 1074, 1125, 1244
TscAI	CASTG	2 cut(s)	412, 527
TseI	GCWGC	3 cut(s)	20, 287, 317
TspDTI	ATGAA	4 cut(s)	538, 823, 930, 935
TspRI	CASTG	2 cut(s)	412, 527
VpaK11BI	GGWCC	2 cut(s)	767, 1190
XapI	RAATTY	1 cut(s)	968
XceI	RCATGY	3 cut(s)	389, 647, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270
XmiI	GTMKAC	3 cut(s)	195, 637, 687
XspI	CTAG	2 cut(s)	464, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.