KH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G51580 |
| fragaria_vesca | FvH4_6g37150 FvH4_6g37150 FvH4_6g37150 |
| malus_domestica | MD09G1161100.v1.1 MD17G1146900.v1.1 |
| prunus_persica | Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1 |
| pyrus_communis | pycom09g07950 pycom17g13960 |
| rosa_chinensis | RchiOBHm_Chr2g0149721 |
| rosa_laevigata | RLG00000020442 |
| rosa_multiflora | Rmu_sc0001091.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00097760 |
| rosa_rugosa | Rorug02G0415600 Rorug02G0415700 Rorug02G0415800 |
| rosa_samantha | Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000 |
| rosa_wichuraiana | Rw2G038740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1120 |
| AccBSI | CCGCTC | 1 cut(s) | 961 |
| AccII | CGCG | 2 cut(s) | 159, 1182 |
| AclWI | GGATC | 6 cut(s) | 554, 765, 932, 945, 1751, 1815 |
| AcoI | YGGCCR | 1 cut(s) | 1552 |
| AcuI | CTGAAG | 3 cut(s) | 168, 291, 804 |
| AcyI | GRCGYC | 1 cut(s) | 1117 |
| AdeI | CACNNNGTG | 1 cut(s) | 218 |
| AfaI | GTAC | 2 cut(s) | 57, 1098 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 710, 1112, 1331, 1361, 1391, 1496, 1540, 1541, 1766 |
| AgeI | ACCGGT | 2 cut(s) | 143, 808 |
| AgsI | TTSAA | 7 cut(s) | 150, 662, 818, 1064, 1255, 1265, 1331 |
| AhlI | ACTAGT | 1 cut(s) | 311 |
| AjnI | CCWGG | 7 cut(s) | 262, 583, 709, 1312, 1471, 1489, 1495 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 934, 966 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 815, 847 |
| AluBI | AGCT | 7 cut(s) | 536, 867, 887, 899, 1202, 1412, 1814 |
| AluI | AGCT | 7 cut(s) | 536, 867, 887, 899, 1202, 1412, 1814 |
| Alw21I | GWGCWC | 2 cut(s) | 676, 901 |
| Alw26I | GTCTC | 2 cut(s) | 1393, 1798 |
| Alw44I | GTGCAC | 1 cut(s) | 672 |
| AlwI | GGATC | 6 cut(s) | 554, 765, 932, 945, 1751, 1815 |
| AoxI | GGCC | 3 cut(s) | 1484, 1508, 1552 |
| ApaLI | GTGCAC | 1 cut(s) | 672 |
| ApeKI | GCWGC | 5 cut(s) | 398, 706, 1073, 1537, 1620 |
| AsiGI | ACCGGT | 2 cut(s) | 143, 808 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 616 |
| AspLEI | GCGC | 3 cut(s) | 337, 349, 637 |
| AspS9I | GGNCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| AsuC2I | CCSGG | 4 cut(s) | 848, 1087, 1542, 1560 |
| AsuHPI | GGTGA | 3 cut(s) | 425, 443, 1706 |
| AsuII | TTCGAA | 1 cut(s) | 372 |
| AsuNHI | GCTAGC | 1 cut(s) | 1172 |
| AvaII | GGWCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| BaeGI | GKGCMC | 1 cut(s) | 676 |
| BalI | TGGCCA | 1 cut(s) | 1554 |
| BamHI | GGATCC | 1 cut(s) | 937 |
| BanII | GRGCYC | 2 cut(s) | 901, 1614 |
| BauI | CACGAG | 1 cut(s) | 981 |
| BbsI | GAAGAC | 3 cut(s) | 59, 650, 1324 |
| Bbv12I | GWGCWC | 2 cut(s) | 676, 901 |
| BbvI | GCAGC | 5 cut(s) | 385, 718, 1060, 1549, 1632 |
| BccI | CCATC | 5 cut(s) | 346, 404, 1013, 1544, 1563 |
| BceAI | ACGGC | 3 cut(s) | 57, 322, 1339 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 380, 414, 899, 933 |
| BciT130I | CCWGG | 7 cut(s) | 264, 585, 711, 1314, 1473, 1491, 1497 |
| BciVI | GTATCC | 1 cut(s) | 1380 |
| BclI | TGATCA | 1 cut(s) | 559 |
| BcnI | CCSGG | 4 cut(s) | 848, 1087, 1542, 1560 |
| BcoDI | GTCTC | 2 cut(s) | 1393, 1798 |
| BcuI | ACTAGT | 1 cut(s) | 311 |
| BfaI | CTAG | 4 cut(s) | 216, 312, 1068, 1173 |
| BfmI | CTRYAG | 2 cut(s) | 1702, 1773 |
| BfoI | RGCGCY | 2 cut(s) | 338, 638 |
| BfuI | GTATCC | 1 cut(s) | 1380 |
| BisI | GCNGC | 7 cut(s) | 45, 112, 399, 707, 1074, 1538, 1621 |
| BlsI | GCNGC | 7 cut(s) | 46, 113, 400, 708, 1075, 1539, 1622 |
| Bme18I | GGWCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| BmgT120I | GGNCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| BmiI | GGNNCC | 5 cut(s) | 796, 939, 1365, 1532, 1572 |
| BmsI | GCATC | 3 cut(s) | 1017, 1185, 1258 |
| BmtI | GCTAGC | 1 cut(s) | 1176 |
| BoxI | GACNNNNGTC | 1 cut(s) | 693 |
| BpiI | GAAGAC | 3 cut(s) | 59, 650, 1324 |
| BpmI | CTGGAG | 3 cut(s) | 606, 1401, 1419 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| Bpu14I | TTCGAA | 1 cut(s) | 372 |
| BpuEI | CTTGAG | 1 cut(s) | 1653 |
| BpuMI | CCSGG | 4 cut(s) | 848, 1087, 1542, 1560 |
| Bsa29I | ATCGAT | 2 cut(s) | 165, 1548 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1554 |
| BsaHI | GRCGYC | 1 cut(s) | 1117 |
| BsaJI | CCNNGG | 3 cut(s) | 262, 583, 1588 |
| BsaWI | WCCGGW | 2 cut(s) | 143, 808 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 710, 1112, 1331, 1361, 1391, 1496, 1540, 1541, 1766 |
| Bse118I | RCCGGY | 2 cut(s) | 143, 808 |
| Bse1I | ACTGG | 5 cut(s) | 94, 1171, 1436, 1631, 1788 |
| Bse3DI | GCAATG | 1 cut(s) | 1311 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1554 |
| BseBI | CCWGG | 7 cut(s) | 264, 585, 711, 1314, 1473, 1491, 1497 |
| BseCI | ATCGAT | 2 cut(s) | 165, 1548 |
| BseDI | CCNNGG | 3 cut(s) | 262, 583, 1588 |
| BseGI | GGATG | 5 cut(s) | 459, 745, 760, 1176, 1555 |
| BseJI | GATNNNNATC | 1 cut(s) | 1554 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 710, 1112, 1331, 1361, 1391, 1496, 1540, 1541, 1766 |
| BseMI | GCAATG | 1 cut(s) | 1311 |
| BseMII | CTCAG | 3 cut(s) | 129, 714, 1809 |
| BseNI | ACTGG | 5 cut(s) | 94, 1171, 1436, 1631, 1788 |
| BseRI | GAGGAG | 4 cut(s) | 756, 836, 971, 1171 |
| BseSI | GKGCMC | 1 cut(s) | 676 |
| BseXI | GCAGC | 5 cut(s) | 385, 718, 1060, 1549, 1632 |
| Bsh1236I | CGCG | 2 cut(s) | 159, 1182 |
| BshFI | GGCC | 3 cut(s) | 1486, 1510, 1554 |
| BshTI | ACCGGT | 2 cut(s) | 143, 808 |
| BshVI | ATCGAT | 2 cut(s) | 165, 1548 |
| BsiHKAI | GWGCWC | 2 cut(s) | 676, 901 |
| BsiSI | CCGG | 8 cut(s) | 26, 77, 144, 809, 848, 1087, 1541, 1560 |
| BslFI | GGGAC | 3 cut(s) | 322, 701, 1783 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 710, 1112, 1331, 1361, 1391, 1496, 1540, 1541, 1766 |
| BsmAI | GTCTC | 2 cut(s) | 1393, 1798 |
| BsmFI | GGGAC | 3 cut(s) | 322, 701, 1783 |
| BsnI | GGCC | 3 cut(s) | 1486, 1510, 1554 |
| Bsp119I | TTCGAA | 1 cut(s) | 372 |
| Bsp1286I | GDGCHC | 3 cut(s) | 676, 901, 1614 |
| Bsp1407I | TGTACA | 2 cut(s) | 55, 1096 |
| Bsp143I | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| Bsp19I | CCATGG | 1 cut(s) | 1588 |
| BspANI | GGCC | 3 cut(s) | 1486, 1510, 1554 |
| BspCNI | CTCAG | 3 cut(s) | 128, 715, 1808 |
| BspDI | ATCGAT | 2 cut(s) | 165, 1548 |
| BspFNI | CGCG | 2 cut(s) | 159, 1182 |
| BspHI | TCATGA | 1 cut(s) | 946 |
| BspLI | GGNNCC | 5 cut(s) | 796, 939, 1365, 1532, 1572 |
| BspMAI | CTGCAG | 1 cut(s) | 1706 |
| BspOI | GCTAGC | 1 cut(s) | 1176 |
| BspPI | GGATC | 6 cut(s) | 554, 765, 932, 945, 1751, 1815 |
| BspQI | GCTCTTC | 2 cut(s) | 183, 267 |
| BspT104I | TTCGAA | 1 cut(s) | 372 |
| BsrBI | CCGCTC | 1 cut(s) | 961 |
| BsrDI | GCAATG | 1 cut(s) | 1311 |
| BsrFI | RCCGGY | 2 cut(s) | 143, 808 |
| BsrGI | TGTACA | 2 cut(s) | 55, 1096 |
| BsrI | ACTGG | 5 cut(s) | 94, 1171, 1436, 1631, 1788 |
| BssAI | RCCGGY | 2 cut(s) | 143, 808 |
| BssECI | CCNNGG | 3 cut(s) | 262, 583, 1588 |
| BssMI | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| BssNI | GRCGYC | 1 cut(s) | 1117 |
| BssSI | CACGAG | 1 cut(s) | 981 |
| BssT1I | CCWWGG | 1 cut(s) | 1588 |
| Bst2BI | CACGAG | 1 cut(s) | 981 |
| Bst2UI | CCWGG | 7 cut(s) | 264, 585, 711, 1314, 1473, 1491, 1497 |
| Bst4CI | ACNGT | 3 cut(s) | 406, 656, 1261 |
| Bst6I | CTCTTC | 3 cut(s) | 183, 267, 813 |
| BstACI | GRCGYC | 1 cut(s) | 1117 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1169 |
| BstAUI | TGTACA | 2 cut(s) | 55, 1096 |
| BstBI | TTCGAA | 1 cut(s) | 372 |
| BstC8I | GCNNGC | 2 cut(s) | 897, 1174 |
| BstDEI | CTNAG | 6 cut(s) | 115, 279, 362, 723, 1678, 1795 |
| BstDSI | CCRYGG | 1 cut(s) | 1588 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1329 |
| BstF5I | GGATG | 5 cut(s) | 459, 745, 760, 1176, 1555 |
| BstFNI | CGCG | 2 cut(s) | 159, 1182 |
| BstH2I | RGCGCY | 2 cut(s) | 338, 638 |
| BstHHI | GCGC | 3 cut(s) | 337, 349, 637 |
| BstKTI | GATC | 8 cut(s) | 549, 562, 760, 940, 1198, 1423, 1759, 1810 |
| BstMAI | GTCTC | 2 cut(s) | 1393, 1798 |
| BstMBI | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 35, 44, 353, 901, 1082, 1169, 1820 |
| BstNI | CCWGG | 7 cut(s) | 264, 585, 711, 1314, 1473, 1491, 1497 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 693 |
| BstSFI | CTRYAG | 2 cut(s) | 1702, 1773 |
| BstSLI | GKGCMC | 1 cut(s) | 676 |
| BstUI | CGCG | 2 cut(s) | 159, 1182 |
| BstV1I | GCAGC | 5 cut(s) | 385, 718, 1060, 1549, 1632 |
| BstV2I | GAAGAC | 3 cut(s) | 59, 650, 1324 |
| BstX2I | RGATCY | 2 cut(s) | 546, 937 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1527, 1562 |
| BstYI | RGATCY | 2 cut(s) | 546, 937 |
| Bsu15I | ATCGAT | 2 cut(s) | 165, 1548 |
| BsuI | GTATCC | 1 cut(s) | 1380 |
| BsuRI | GGCC | 3 cut(s) | 1486, 1510, 1554 |
| BsuTUI | ATCGAT | 2 cut(s) | 165, 1548 |
| BtgI | CCRYGG | 1 cut(s) | 1588 |
| BtgZI | GCGATG | 1 cut(s) | 405 |
| BtsCI | GGATG | 5 cut(s) | 459, 745, 760, 1176, 1555 |
| Cac8I | GCNNGC | 2 cut(s) | 897, 1174 |
| CciI | TCATGA | 1 cut(s) | 946 |
| CfoI | GCGC | 3 cut(s) | 337, 349, 637 |
| Cfr10I | RCCGGY | 2 cut(s) | 143, 808 |
| Cfr13I | GGNCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| ClaI | ATCGAT | 2 cut(s) | 165, 1548 |
| CseI | GACGC | 4 cut(s) | 148, 404, 909, 1171 |
| CsiI | ACCWGGT | 1 cut(s) | 1489 |
| Csp6I | GTAC | 2 cut(s) | 56, 1097 |
| CspAI | ACCGGT | 2 cut(s) | 143, 808 |
| CviQI | GTAC | 2 cut(s) | 56, 1097 |
| DdeI | CTNAG | 6 cut(s) | 115, 279, 362, 723, 1678, 1795 |
| DpnI | GATC | 8 cut(s) | 548, 561, 759, 939, 1197, 1422, 1758, 1809 |
| DpnII | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| DraIII | CACNNNGTG | 1 cut(s) | 218 |
| EaeI | YGGCCR | 1 cut(s) | 1552 |
| Eam1104I | CTCTTC | 3 cut(s) | 183, 267, 813 |
| EarI | CTCTTC | 3 cut(s) | 183, 267, 813 |
| EciI | GGCGGA | 3 cut(s) | 62, 708, 1341 |
| Ecl136II | GAGCTC | 1 cut(s) | 899 |
| Eco130I | CCWWGG | 1 cut(s) | 1588 |
| Eco24I | GRGCYC | 2 cut(s) | 901, 1614 |
| Eco32I | GATATC | 1 cut(s) | 975 |
| Eco47I | GGWCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| Eco53kI | GAGCTC | 1 cut(s) | 899 |
| Eco57I | CTGAAG | 3 cut(s) | 168, 291, 804 |
| EcoICRI | GAGCTC | 1 cut(s) | 899 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1329 |
| EcoRII | CCWGG | 7 cut(s) | 262, 583, 709, 1312, 1471, 1489, 1495 |
| EcoRV | GATATC | 1 cut(s) | 975 |
| EcoT14I | CCWWGG | 1 cut(s) | 1588 |
| EcoT38I | GRGCYC | 2 cut(s) | 901, 1614 |
| ErhI | CCWWGG | 1 cut(s) | 1588 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1309, 1341 |
| FaqI | GGGAC | 3 cut(s) | 322, 701, 1783 |
| FauI | CCCGC | 2 cut(s) | 298, 1542 |
| FbaI | TGATCA | 1 cut(s) | 559 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 112, 399, 707, 1074, 1538, 1621 |
| FokI | GGATG | 5 cut(s) | 466, 732, 747, 1163, 1542 |
| FriOI | GRGCYC | 2 cut(s) | 901, 1614 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 112, 399, 707, 1074, 1538, 1621 |
| FspBI | CTAG | 4 cut(s) | 216, 312, 1068, 1173 |
| GlaI | GCGC | 3 cut(s) | 336, 348, 636 |
| GluI | GCNGC | 7 cut(s) | 45, 112, 399, 707, 1074, 1538, 1621 |
| GsuI | CTGGAG | 3 cut(s) | 606, 1401, 1419 |
| HaeII | RGCGCY | 2 cut(s) | 338, 638 |
| HaeIII | GGCC | 3 cut(s) | 1486, 1510, 1554 |
| HapII | CCGG | 8 cut(s) | 26, 77, 144, 809, 848, 1087, 1541, 1560 |
| HgaI | GACGC | 4 cut(s) | 148, 404, 909, 1171 |
| HhaI | GCGC | 3 cut(s) | 337, 349, 637 |
| Hin1I | GRCGYC | 1 cut(s) | 1117 |
| Hin6I | GCGC | 3 cut(s) | 335, 347, 635 |
| HinP1I | GCGC | 3 cut(s) | 335, 347, 635 |
| HindIII | AAGCTT | 1 cut(s) | 865 |
| HpaII | CCGG | 8 cut(s) | 26, 77, 144, 809, 848, 1087, 1541, 1560 |
| HphI | GGTGA | 3 cut(s) | 425, 443, 1706 |
| Hpy166II | GTNNAC | 3 cut(s) | 674, 1346, 1585 |
| Hpy188III | TCNNGA | 9 cut(s) | 662, 947, 1265, 1298, 1373, 1418, 1577, 1734, 1863 |
| Hpy8I | GTNNAC | 3 cut(s) | 674, 1346, 1585 |
| Hpy99I | CGWCG | 4 cut(s) | 34, 43, 343, 346 |
| HpyAV | CCTTC | 8 cut(s) | 192, 223, 434, 625, 993, 1524, 1772, 1841 |
| HpyCH4III | ACNGT | 3 cut(s) | 406, 656, 1261 |
| HpyCH4IV | ACGT | 2 cut(s) | 22, 1117 |
| HpyCH4V | TGCA | 7 cut(s) | 95, 674, 904, 1036, 1646, 1704, 1753 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 35, 44, 353, 901, 1082, 1169, 1820 |
| HpyF3I | CTNAG | 6 cut(s) | 115, 279, 362, 723, 1678, 1795 |
| HpySE526I | ACGT | 2 cut(s) | 22, 1117 |
| Hsp92I | GRCGYC | 1 cut(s) | 1117 |
| HspAI | GCGC | 3 cut(s) | 335, 347, 635 |
| Ksp22I | TGATCA | 1 cut(s) | 559 |
| Kzo9I | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| LguI | GCTCTTC | 2 cut(s) | 183, 267 |
| LmnI | GCTCC | 5 cut(s) | 294, 533, 884, 958, 1736 |
| Lsp1109I | GCAGC | 5 cut(s) | 385, 718, 1060, 1549, 1632 |
| LweI | GCATC | 3 cut(s) | 1017, 1185, 1258 |
| MabI | ACCWGGT | 1 cut(s) | 1489 |
| MaeI | CTAG | 4 cut(s) | 216, 312, 1068, 1173 |
| MaeII | ACGT | 2 cut(s) | 22, 1117 |
| MaeIII | GTNAC | 4 cut(s) | 139, 646, 1424, 1706 |
| MalI | GATC | 8 cut(s) | 548, 561, 759, 939, 1197, 1422, 1758, 1809 |
| MbiI | CCGCTC | 1 cut(s) | 961 |
| MboI | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| MflI | RGATCY | 2 cut(s) | 546, 937 |
| MhlI | GDGCHC | 3 cut(s) | 676, 901, 1614 |
| MlsI | TGGCCA | 1 cut(s) | 1554 |
| MluCI | AATT | 4 cut(s) | 419, 1044, 1249, 1714 |
| MluNI | TGGCCA | 1 cut(s) | 1554 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MmeI | TCCRAC | 4 cut(s) | 704, 772, 841, 965 |
| Mox20I | TGGCCA | 1 cut(s) | 1554 |
| MroXI | GAANNNNTTC | 1 cut(s) | 616 |
| MscI | TGGCCA | 1 cut(s) | 1554 |
| MseI | TTAA | 1 cut(s) | 801 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1464, 1560, 1689 |
| Msp20I | TGGCCA | 1 cut(s) | 1554 |
| MspI | CCGG | 8 cut(s) | 26, 77, 144, 809, 848, 1087, 1541, 1560 |
| MvaI | CCWGG | 7 cut(s) | 264, 585, 711, 1314, 1473, 1491, 1497 |
| MvnI | CGCG | 2 cut(s) | 159, 1182 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 35, 44, 353, 901, 1082, 1169, 1820 |
| NciI | CCSGG | 4 cut(s) | 848, 1087, 1542, 1560 |
| NcoI | CCATGG | 1 cut(s) | 1588 |
| NdeII | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| NheI | GCTAGC | 1 cut(s) | 1172 |
| NlaIV | GGNNCC | 5 cut(s) | 796, 939, 1365, 1532, 1572 |
| NspV | TTCGAA | 1 cut(s) | 372 |
| PagI | TCATGA | 1 cut(s) | 946 |
| PciSI | GCTCTTC | 2 cut(s) | 183, 267 |
| PdmI | GAANNNNTTC | 1 cut(s) | 616 |
| PfoI | TCCNGGA | 3 cut(s) | 1312, 1471, 1495 |
| PinAI | ACCGGT | 2 cut(s) | 143, 808 |
| PkrI | GCNGC | 7 cut(s) | 46, 113, 400, 708, 1075, 1539, 1622 |
| PleI | GAGTC | 1 cut(s) | 58 |
| PpsI | GAGTC | 1 cut(s) | 58 |
| PshAI | GACNNNNGTC | 1 cut(s) | 693 |
| Psp124BI | GAGCTC | 1 cut(s) | 901 |
| Psp6I | CCWGG | 7 cut(s) | 262, 583, 709, 1312, 1471, 1489, 1495 |
| PspGI | CCWGG | 7 cut(s) | 262, 583, 709, 1312, 1471, 1489, 1495 |
| PspN4I | GGNNCC | 5 cut(s) | 796, 939, 1365, 1532, 1572 |
| PspPI | GGNCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| PstI | CTGCAG | 1 cut(s) | 1706 |
| PsuI | RGATCY | 2 cut(s) | 546, 937 |
| RsaI | GTAC | 2 cut(s) | 57, 1098 |
| RsaNI | GTAC | 2 cut(s) | 56, 1097 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1464, 1560, 1689 |
| SacI | GAGCTC | 1 cut(s) | 901 |
| SapI | GCTCTTC | 2 cut(s) | 183, 267 |
| SaqAI | TTAA | 1 cut(s) | 801 |
| SatI | GCNGC | 7 cut(s) | 45, 112, 399, 707, 1074, 1538, 1621 |
| Sau3AI | GATC | 8 cut(s) | 546, 559, 757, 937, 1195, 1420, 1756, 1807 |
| Sau96I | GGNCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SduI | GDGCHC | 3 cut(s) | 676, 901, 1614 |
| SexAI | ACCWGGT | 1 cut(s) | 1489 |
| SfaNI | GCATC | 3 cut(s) | 1017, 1185, 1258 |
| SfcI | CTRYAG | 2 cut(s) | 1702, 1773 |
| SfuI | TTCGAA | 1 cut(s) | 372 |
| SinI | GGWCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1464, 1560, 1689 |
| SmlI | CTYRAG | 1 cut(s) | 1668 |
| SmoI | CTYRAG | 1 cut(s) | 1668 |
| SpeI | ACTAGT | 1 cut(s) | 311 |
| Sse9I | AATT | 4 cut(s) | 419, 1044, 1249, 1714 |
| SspI | AATATT | 1 cut(s) | 1284 |
| SspMI | CTAG | 4 cut(s) | 216, 312, 1068, 1173 |
| SstI | GAGCTC | 1 cut(s) | 901 |
| StyI | CCWWGG | 1 cut(s) | 1588 |
| TaaI | ACNGT | 3 cut(s) | 406, 656, 1261 |
| TaiI | ACGT | 2 cut(s) | 25, 1120 |
| TaqI | TCGA | 6 cut(s) | 124, 165, 239, 372, 620, 1548 |
| TaqII | GACCGA | 1 cut(s) | 1411 |
| TasI | AATT | 4 cut(s) | 419, 1044, 1249, 1714 |
| TatI | WGTACW | 2 cut(s) | 55, 1096 |
| TauI | GCSGC | 2 cut(s) | 47, 114 |
| Tru1I | TTAA | 1 cut(s) | 801 |
| Tru9I | TTAA | 1 cut(s) | 801 |
| TseI | GCWGC | 5 cut(s) | 398, 706, 1073, 1537, 1620 |
| TspDTI | ATGAA | 5 cut(s) | 432, 620, 1227, 1348, 1826 |
| TspGWI | ACGGA | 3 cut(s) | 53, 687, 1356 |
| VneI | GTGCAC | 1 cut(s) | 672 |
| VpaK11BI | GGWCC | 8 cut(s) | 794, 1343, 1364, 1394, 1442, 1469, 1493, 1530 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1329 |
| XmnI | GAANNNNTTC | 1 cut(s) | 616 |
| XspI | CTAG | 4 cut(s) | 216, 312, 1068, 1173 |
| ZraI | GACGTC | 1 cut(s) | 1118 |