Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009557

Physical Location & Seq

Genomic Coordinates Forward (+)

53223515 .. 53224335

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACGGGGTGTCAACTATGGAGTGTGGACTCCATTCCTCTTCGTTCTATTGAGACGTGGATCACCGTGAAGGGCTTGCCTCCTACTTTGCGCAATAAGCTCCTCCTTTCTATGATTGGTTCTTCGATTGGAAGGGTAATCAGGTTGGATCATGTGGCTCTGAATCGAAAGGAGGAAGAACAAAGGATTCGATTGGAGATGAACAAAAGAAGGCGTTTTAGATTCTTTCGCCATTTTTCCTTCTCGGTGAATGTGGAGGTGGACGTGAATATCGTGTATGAAAAGGAGAAGGAGGCGTTGCAGGTGACGCCTCCGGTGGCAGCAATGGCTGGCCTGAATCTGGTGACTACTAGAGGGTCTTGGGTTTCAGCCCATTATGGTATTTTGGGGGCTGAGGCTTGTCAGCAAAGTGGTATTGCGGTGTTGCTGATGGAGGGGCAGCAGCTGGATTTGAGTGGTCATAAGCGATATGCTGAGGTTGCTTCAGCTCATGCTGGGAGGAAGCTGCTTGCGTTGCCAGTGCCTGCTCTTCCTGAGGCCTCTAACAATTACCTCAGGAGCATGGGAGGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

191

Amino Acids

21.31

Weight (kDa)

9.74

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51580
fragaria_vesca	FvH4_6g37150 FvH4_6g37150 FvH4_6g37150
malus_domestica	MD09G1161100.v1.1 MD17G1146900.v1.1
prunus_persica	Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1
pyrus_communis	pycom09g07950 pycom17g13960
rosa_chinensis	RchiOBHm_Chr2g0149721
rosa_laevigata	RLG00000020442
rosa_multiflora	Rmu_sc0001091.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097760
rosa_rugosa	Rorug02G0415600 Rorug02G0415700 Rorug02G0415800
rosa_samantha	Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000
rosa_wichuraiana	Rw2G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	292
Acc16I	TGCGCA	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	68, 156
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	340
AhdI	GACNNNNNGTC	1 cut(s)	9
AjiI	CACGTC	2 cut(s)	57, 265
AluBI	AGCT	4 cut(s)	100, 445, 488, 505
AluI	AGCT	4 cut(s)	100, 445, 488, 505
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	68, 156
AlwNI	CAGNNNCTG	2 cut(s)	445, 524
AoxI	GGCC	2 cut(s)	331, 537
ApeKI	GCWGC	4 cut(s)	320, 439, 442, 505
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	4 cut(s)	55, 259, 316, 355
AxyI	CCTNAGG	2 cut(s)	534, 554
BbvCI	CCTCAGC	2 cut(s)	393, 474
BbvI	GCAGC	4 cut(s)	332, 451, 454, 492
BccI	CCATC	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	4 cut(s)	321, 440, 443, 506
BlsI	GCNGC	4 cut(s)	322, 441, 444, 507
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgBI	CACGTC	2 cut(s)	57, 265
Bpu10I	CCTNAGC	2 cut(s)	393, 474
BsaHI	GRCGYC	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	518
Bse21I	CCTNAGG	2 cut(s)	534, 554
Bse3DI	GCAATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	4 cut(s)	384, 465, 525, 568
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	4 cut(s)	332, 451, 454, 492
BseYI	CCCAGC	1 cut(s)	494
BshFI	GGCC	2 cut(s)	333, 539
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	333, 539
Bsp143I	GATC	2 cut(s)	60, 148
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	2 cut(s)	333, 539
BspCNI	CTCAG	4 cut(s)	385, 466, 526, 567
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	68, 156
BspQI	GCTCTTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	518
BssMI	GATC	2 cut(s)	60, 148
BssNI	GRCGYC	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	45, 534
BstACI	GRCGYC	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	77, 331, 510, 525
BstDEI	CTNAG	4 cut(s)	393, 474, 534, 554
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	63, 151
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	60, 148
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 307, 326, 479, 514
BstV1I	GCAGC	4 cut(s)	332, 451, 454, 492
Bsu36I	CCTNAGG	2 cut(s)	534, 554
BsuRI	GGCC	2 cut(s)	333, 539
BtrI	CACGTC	2 cut(s)	57, 265
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	77, 331, 510, 525
CaiI	CAGNNNCTG	2 cut(s)	445, 524
CfoI	GCGC	1 cut(s)	93
CseI	GACGC	1 cut(s)	316
CviAII	CATG	3 cut(s)	152, 491, 562
DdeI	CTNAG	4 cut(s)	393, 474, 534, 554
DpnI	GATC	2 cut(s)	62, 150
DpnII	GATC	2 cut(s)	60, 148
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	45, 534
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	2 cut(s)	45, 534
Eco147I	AGGCCT	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	2 cut(s)	534, 554
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	3 cut(s)	155, 494, 565
FaiI	YATR	9 cut(s)	19, 113, 153, 279, 378, 462, 471, 492, 563
FatI	CATG	3 cut(s)	151, 490, 561
Fnu4HI	GCNGC	4 cut(s)	321, 440, 443, 506
Fsp4HI	GCNGC	4 cut(s)	321, 440, 443, 506
FspBI	CTAG	1 cut(s)	351
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	4 cut(s)	321, 440, 443, 506
GsaI	CCCAGC	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	333, 539
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	155, 494, 565
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HinfI	GANTC	5 cut(s)	29, 163, 187, 222, 337
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	4 cut(s)	55, 259, 316, 355
Hpy166II	GTNNAC	3 cut(s)	14, 28, 262
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	533, 556
Hpy8I	GTNNAC	3 cut(s)	14, 28, 262
HpyAV	CCTTC	5 cut(s)	64, 126, 204, 250, 283
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	56, 264
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 307, 326, 479, 514
HpyF3I	CTNAG	4 cut(s)	393, 474, 534, 554
HpySE526I	ACGT	2 cut(s)	56, 264
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	155, 494, 565
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	60, 148
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	2 cut(s)	105, 558
Lsp1109I	GCAGC	4 cut(s)	332, 451, 454, 492
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	56, 264
MaeIII	GTNAC	2 cut(s)	304, 343
MalI	GATC	2 cut(s)	62, 150
MboI	GATC	2 cut(s)	60, 148
MboII	GAAGA	4 cut(s)	32, 114, 188, 521
MluCI	AATT	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	5 cut(s)	97, 307, 326, 479, 514
NdeII	GATC	2 cut(s)	60, 148
NlaIII	CATG	3 cut(s)	155, 494, 565
NmuCI	GTSAC	2 cut(s)	304, 343
NsbI	TGCGCA	1 cut(s)	92
PaqCI	CACCTGC	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	4 cut(s)	163, 187, 222, 337
PkrI	GCNGC	4 cut(s)	322, 441, 444, 507
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	494
PstNI	CAGNNNCTG	2 cut(s)	445, 524
PvuII	CAGCTG	1 cut(s)	445
SapI	GCTCTTC	1 cut(s)	534
SatI	GCNGC	4 cut(s)	321, 440, 443, 506
Sau3AI	GATC	2 cut(s)	60, 148
SchI	GAGTC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	547
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	59, 267
TaqI	TCGA	3 cut(s)	125, 166, 190
TasI	AATT	1 cut(s)	547
TfiI	GAWTC	4 cut(s)	163, 187, 222, 337
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	2 cut(s)	304, 343
TseI	GCWGC	4 cut(s)	320, 439, 442, 505
Tsp45I	GTSAC	2 cut(s)	304, 343
TspDTI	ATGAA	2 cut(s)	215, 294
TspRI	CASTG	1 cut(s)	525
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.