KH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G51580 |
| fragaria_vesca | FvH4_6g37150 FvH4_6g37150 FvH4_6g37150 |
| malus_domestica | MD09G1161100.v1.1 MD17G1146900.v1.1 |
| prunus_persica | Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1 |
| pyrus_communis | pycom09g07950 pycom17g13960 |
| rosa_chinensis | RchiOBHm_Chr2g0149721 |
| rosa_laevigata | RLG00000020442 |
| rosa_multiflora | Rmu_sc0001091.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00097760 |
| rosa_rugosa | Rorug02G0415600 Rorug02G0415700 Rorug02G0415800 |
| rosa_samantha | Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000 |
| rosa_wichuraiana | Rw2G038740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 830 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 827, 1175 |
| AccBSI | CCGCTC | 1 cut(s) | 451 |
| AccIII | TCCGGA | 1 cut(s) | 1370 |
| AciI | CCGC | 4 cut(s) | 451, 501, 539, 1191 |
| AclWI | GGATC | 9 cut(s) | 19, 160, 954, 957, 1011, 1338, 1351, 1368, 1381 |
| AcsI | RAATTY | 2 cut(s) | 823, 1315 |
| AfaI | GTAC | 3 cut(s) | 726, 753, 842 |
| AfeI | AGCGCT | 2 cut(s) | 118, 142 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 212, 827, 1067, 1175 |
| AflIII | ACRYGT | 1 cut(s) | 843 |
| AgsI | TTSAA | 4 cut(s) | 395, 554, 897, 1335 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 982 |
| AjnI | CCWGG | 4 cut(s) | 251, 556, 904, 1110 |
| AluBI | AGCT | 6 cut(s) | 44, 228, 512, 653, 741, 1122 |
| AluI | AGCT | 6 cut(s) | 44, 228, 512, 653, 741, 1122 |
| Alw26I | GTCTC | 3 cut(s) | 27, 1023, 1185 |
| AlwI | GGATC | 9 cut(s) | 19, 160, 954, 957, 1011, 1338, 1351, 1368, 1381 |
| Aor13HI | TCCGGA | 1 cut(s) | 1370 |
| Aor51HI | AGCGCT | 2 cut(s) | 118, 142 |
| ApeKI | GCWGC | 4 cut(s) | 104, 431, 563, 1394 |
| ApoI | RAATTY | 2 cut(s) | 823, 1315 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1180, 1212 |
| AseI | ATTAAT | 1 cut(s) | 636 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 690 |
| AspLEI | GCGC | 2 cut(s) | 119, 143 |
| AspS9I | GGNCC | 2 cut(s) | 1027, 1070 |
| AsuC2I | CCSGG | 2 cut(s) | 1062, 1341 |
| AsuHPI | GGTGA | 2 cut(s) | 912, 1064 |
| AvaII | GGWCC | 2 cut(s) | 1027, 1070 |
| AxyI | CCTNAGG | 1 cut(s) | 1133 |
| BaeGI | GKGCMC | 1 cut(s) | 835 |
| BamHI | GGATCC | 2 cut(s) | 1343, 1373 |
| BanI | GGYRCC | 1 cut(s) | 830 |
| BbsI | GAAGAC | 1 cut(s) | 840 |
| BbvI | GCAGC | 4 cut(s) | 116, 418, 550, 1381 |
| BccI | CCATC | 2 cut(s) | 942, 1232 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 423, 457, 1207, 1241 |
| BciT130I | CCWGG | 4 cut(s) | 253, 558, 906, 1112 |
| BciVI | GTATCC | 2 cut(s) | 924, 1378 |
| BcnI | CCSGG | 2 cut(s) | 1062, 1341 |
| BcoDI | GTCTC | 3 cut(s) | 27, 1023, 1185 |
| BfaI | CTAG | 5 cut(s) | 114, 138, 225, 576, 663 |
| BfmI | CTRYAG | 2 cut(s) | 237, 564 |
| BfoI | RGCGCY | 2 cut(s) | 120, 144 |
| BfuI | GTATCC | 2 cut(s) | 924, 1378 |
| BglII | AGATCT | 1 cut(s) | 1085 |
| BisI | GCNGC | 5 cut(s) | 105, 432, 564, 1192, 1395 |
| BlsI | GCNGC | 5 cut(s) | 106, 433, 565, 1193, 1396 |
| Bme1390I | CCNGG | 6 cut(s) | 253, 558, 906, 1062, 1112, 1341 |
| Bme18I | GGWCC | 2 cut(s) | 1027, 1070 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 982 |
| BmgT120I | GGNCC | 2 cut(s) | 1027, 1070 |
| BmiI | GGNNCC | 6 cut(s) | 376, 581, 832, 1167, 1345, 1375 |
| BmrFI | CCNGG | 6 cut(s) | 253, 558, 906, 1062, 1112, 1341 |
| BmsI | GCATC | 7 cut(s) | 91, 418, 419, 535, 748, 852, 1138 |
| BpiI | GAAGAC | 1 cut(s) | 840 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1075, 1107, 1165, 1197 |
| BpmI | CTGGAG | 1 cut(s) | 957 |
| Bpu10I | CCTNAGC | 2 cut(s) | 93, 483 |
| BpuEI | CTTGAG | 1 cut(s) | 1227 |
| BpuMI | CCSGG | 2 cut(s) | 1062, 1341 |
| BsaI | GGTCTC | 1 cut(s) | 1185 |
| BsaJI | CCNNGG | 9 cut(s) | 7, 169, 884, 904, 1110, 1111, 1169, 1347, 1411 |
| BsaWI | WCCGGW | 1 cut(s) | 1370 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 212, 827, 1067, 1175 |
| Bse1I | ACTGG | 3 cut(s) | 181, 661, 982 |
| Bse21I | CCTNAGG | 1 cut(s) | 1133 |
| BseAI | TCCGGA | 1 cut(s) | 1370 |
| BseBI | CCWGG | 4 cut(s) | 253, 558, 906, 1112 |
| BseDI | CCNNGG | 9 cut(s) | 7, 169, 884, 904, 1110, 1111, 1169, 1347, 1411 |
| BseGI | GGATG | 4 cut(s) | 451, 589, 763, 1419 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 212, 827, 1067, 1175 |
| BseMII | CTCAG | 3 cut(s) | 474, 849, 1412 |
| BseNI | ACTGG | 3 cut(s) | 181, 661, 982 |
| BseRI | GAGGAG | 1 cut(s) | 572 |
| BseSI | GKGCMC | 1 cut(s) | 835 |
| BseXI | GCAGC | 4 cut(s) | 116, 418, 550, 1381 |
| BsgI | GTGCAG | 4 cut(s) | 171, 258, 417, 453 |
| BshNI | GGYRCC | 1 cut(s) | 830 |
| BsiSI | CCGG | 4 cut(s) | 1061, 1073, 1341, 1371 |
| BslFI | GGGAC | 2 cut(s) | 970, 1077 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 212, 827, 1067, 1175 |
| BsmAI | GTCTC | 3 cut(s) | 27, 1023, 1185 |
| BsmFI | GGGAC | 2 cut(s) | 970, 1077 |
| BsmI | GAATGC | 1 cut(s) | 1247 |
| Bso31I | GGTCTC | 1 cut(s) | 1185 |
| Bsp1286I | GDGCHC | 1 cut(s) | 835 |
| Bsp13I | TCCGGA | 1 cut(s) | 1370 |
| Bsp1407I | TGTACA | 2 cut(s) | 724, 751 |
| Bsp19I | CCATGG | 3 cut(s) | 7, 169, 1411 |
| BspACI | CCGC | 4 cut(s) | 451, 501, 539, 1191 |
| BspCNI | CTCAG | 3 cut(s) | 475, 850, 1411 |
| BspEI | TCCGGA | 1 cut(s) | 1370 |
| BspHI | TCATGA | 3 cut(s) | 1233, 1251, 1327 |
| BspLI | GGNNCC | 6 cut(s) | 376, 581, 832, 1167, 1345, 1375 |
| BspMAI | CTGCAG | 1 cut(s) | 568 |
| BspPI | GGATC | 9 cut(s) | 19, 160, 954, 957, 1011, 1338, 1351, 1368, 1381 |
| BspT107I | GGYRCC | 1 cut(s) | 830 |
| BspTNI | GGTCTC | 1 cut(s) | 1185 |
| BsrBI | CCGCTC | 1 cut(s) | 451 |
| BsrGI | TGTACA | 2 cut(s) | 724, 751 |
| BsrI | ACTGG | 3 cut(s) | 181, 661, 982 |
| BssECI | CCNNGG | 9 cut(s) | 7, 169, 884, 904, 1110, 1111, 1169, 1347, 1411 |
| BssT1I | CCWWGG | 5 cut(s) | 7, 169, 1169, 1347, 1411 |
| Bst2UI | CCWGG | 4 cut(s) | 253, 558, 906, 1112 |
| Bst4CI | ACNGT | 3 cut(s) | 840, 1010, 1280 |
| Bst6I | CTCTTC | 2 cut(s) | 268, 306 |
| BstAUI | TGTACA | 2 cut(s) | 724, 751 |
| BstC8I | GCNNGC | 3 cut(s) | 186, 651, 743 |
| BstDEI | CTNAG | 5 cut(s) | 93, 483, 858, 1133, 1398 |
| BstDSI | CCRYGG | 3 cut(s) | 7, 169, 1411 |
| BstF5I | GGATG | 4 cut(s) | 451, 589, 763, 1419 |
| BstH2I | RGCGCY | 2 cut(s) | 120, 144 |
| BstHHI | GCGC | 2 cut(s) | 119, 143 |
| BstMAI | GTCTC | 3 cut(s) | 27, 1023, 1185 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 509, 572, 659 |
| BstNI | CCWGG | 4 cut(s) | 253, 558, 906, 1112 |
| BstNSI | RCATGY | 2 cut(s) | 847, 1394 |
| BstSCI | CCNGG | 6 cut(s) | 251, 556, 904, 1060, 1110, 1339 |
| BstSFI | CTRYAG | 2 cut(s) | 237, 564 |
| BstSLI | GKGCMC | 1 cut(s) | 835 |
| BstV1I | GCAGC | 4 cut(s) | 116, 418, 550, 1381 |
| BstV2I | GAAGAC | 1 cut(s) | 840 |
| BstX2I | RGATCY | 4 cut(s) | 11, 1085, 1343, 1373 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 176, 1101 |
| BstYI | RGATCY | 4 cut(s) | 11, 1085, 1343, 1373 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1133 |
| BsuI | GTATCC | 2 cut(s) | 924, 1378 |
| BtgI | CCRYGG | 3 cut(s) | 7, 169, 1411 |
| BtsCI | GGATG | 4 cut(s) | 451, 589, 763, 1419 |
| BtsIMutI | CAGTG | 1 cut(s) | 1015 |
| Cac8I | GCNNGC | 3 cut(s) | 186, 651, 743 |
| CciI | TCATGA | 3 cut(s) | 1233, 1251, 1327 |
| CfoI | GCGC | 2 cut(s) | 119, 143 |
| Cfr13I | GGNCC | 2 cut(s) | 1027, 1070 |
| CseI | GACGC | 1 cut(s) | 1046 |
| CsiI | ACCWGGT | 1 cut(s) | 556 |
| Csp6I | GTAC | 3 cut(s) | 725, 752, 841 |
| CviQI | GTAC | 3 cut(s) | 725, 752, 841 |
| DdeI | CTNAG | 5 cut(s) | 93, 483, 858, 1133, 1398 |
| DriI | GACNNNNNGTC | 1 cut(s) | 982 |
| Eam1104I | CTCTTC | 2 cut(s) | 268, 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 982 |
| EarI | CTCTTC | 2 cut(s) | 268, 306 |
| Eco130I | CCWWGG | 5 cut(s) | 7, 169, 1169, 1347, 1411 |
| Eco31I | GGTCTC | 1 cut(s) | 1185 |
| Eco32I | GATATC | 1 cut(s) | 1305 |
| Eco47I | GGWCC | 2 cut(s) | 1027, 1070 |
| Eco47III | AGCGCT | 2 cut(s) | 118, 142 |
| Eco81I | CCTNAGG | 1 cut(s) | 1133 |
| EcoRII | CCWGG | 4 cut(s) | 251, 556, 904, 1110 |
| EcoRV | GATATC | 1 cut(s) | 1305 |
| EcoT14I | CCWWGG | 5 cut(s) | 7, 169, 1169, 1347, 1411 |
| ErhI | CCWWGG | 5 cut(s) | 7, 169, 1169, 1347, 1411 |
| FaqI | GGGAC | 2 cut(s) | 970, 1077 |
| FauI | CCCGC | 2 cut(s) | 444, 508 |
| Fnu4HI | GCNGC | 5 cut(s) | 105, 432, 564, 1192, 1395 |
| FokI | GGATG | 4 cut(s) | 458, 576, 770, 1406 |
| Fsp4HI | GCNGC | 5 cut(s) | 105, 432, 564, 1192, 1395 |
| FspBI | CTAG | 5 cut(s) | 114, 138, 225, 576, 663 |
| GlaI | GCGC | 2 cut(s) | 118, 142 |
| GluI | GCNGC | 5 cut(s) | 105, 432, 564, 1192, 1395 |
| GsuI | CTGGAG | 1 cut(s) | 957 |
| HaeII | RGCGCY | 2 cut(s) | 120, 144 |
| HapII | CCGG | 4 cut(s) | 1061, 1073, 1341, 1371 |
| HgaI | GACGC | 1 cut(s) | 1046 |
| HhaI | GCGC | 2 cut(s) | 119, 143 |
| Hin6I | GCGC | 2 cut(s) | 117, 141 |
| HinP1I | GCGC | 2 cut(s) | 117, 141 |
| HincII | GTYRAC | 3 cut(s) | 196, 293, 1199 |
| HindII | GTYRAC | 3 cut(s) | 196, 293, 1199 |
| HindIII | AAGCTT | 1 cut(s) | 739 |
| HpaII | CCGG | 4 cut(s) | 1061, 1073, 1341, 1371 |
| HphI | GGTGA | 2 cut(s) | 912, 1064 |
| Hpy166II | GTNNAC | 4 cut(s) | 196, 293, 1104, 1199 |
| Hpy188I | TCNGA | 7 cut(s) | 360, 445, 696, 1287, 1293, 1401, 1434 |
| Hpy8I | GTNNAC | 4 cut(s) | 196, 293, 1104, 1199 |
| HpyAV | CCTTC | 2 cut(s) | 89, 927 |
| HpyCH4III | ACNGT | 3 cut(s) | 840, 1010, 1280 |
| HpyCH4IV | ACGT | 2 cut(s) | 720, 1260 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 509, 572, 659 |
| HpyF3I | CTNAG | 5 cut(s) | 93, 483, 858, 1133, 1398 |
| HpySE526I | ACGT | 2 cut(s) | 720, 1260 |
| HspAI | GCGC | 2 cut(s) | 117, 141 |
| Kpn2I | TCCGGA | 1 cut(s) | 1370 |
| LmnI | GCTCC | 3 cut(s) | 380, 585, 1171 |
| Lsp1109I | GCAGC | 4 cut(s) | 116, 418, 550, 1381 |
| LweI | GCATC | 7 cut(s) | 91, 418, 419, 535, 748, 852, 1138 |
| MabI | ACCWGGT | 1 cut(s) | 556 |
| MaeI | CTAG | 5 cut(s) | 114, 138, 225, 576, 663 |
| MaeII | ACGT | 2 cut(s) | 720, 1260 |
| MaeIII | GTNAC | 1 cut(s) | 257 |
| MbiI | CCGCTC | 1 cut(s) | 451 |
| MboII | GAAGA | 6 cut(s) | 61, 255, 320, 323, 840, 1080 |
| MflI | RGATCY | 4 cut(s) | 11, 1085, 1343, 1373 |
| MhlI | GDGCHC | 1 cut(s) | 835 |
| MluCI | AATT | 8 cut(s) | 268, 490, 534, 823, 892, 1140, 1153, 1315 |
| MlyI | GAGTC | 3 cut(s) | 191, 1099, 1249 |
| MmeI | TCCRAC | 1 cut(s) | 907 |
| MroI | TCCGGA | 1 cut(s) | 1370 |
| MroXI | GAANNNNTTC | 1 cut(s) | 690 |
| MseI | TTAA | 5 cut(s) | 17, 231, 324, 636, 1211 |
| MslI | CAYNNNNRTG | 2 cut(s) | 714, 1263 |
| MspA1I | CMGCKG | 1 cut(s) | 44 |
| MspI | CCGG | 4 cut(s) | 1061, 1073, 1341, 1371 |
| MspR9I | CCNGG | 6 cut(s) | 253, 558, 906, 1062, 1112, 1341 |
| Mva1269I | GAATGC | 1 cut(s) | 1247 |
| MvaI | CCWGG | 4 cut(s) | 253, 558, 906, 1112 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 509, 572, 659 |
| NciI | CCSGG | 2 cut(s) | 1062, 1341 |
| NcoI | CCATGG | 3 cut(s) | 7, 169, 1411 |
| NlaIV | GGNNCC | 6 cut(s) | 376, 581, 832, 1167, 1345, 1375 |
| NspI | RCATGY | 2 cut(s) | 847, 1394 |
| PagI | TCATGA | 3 cut(s) | 1233, 1251, 1327 |
| PasI | CCCWGGG | 1 cut(s) | 1111 |
| PciI | ACATGT | 1 cut(s) | 843 |
| PctI | GAATGC | 1 cut(s) | 1247 |
| PdmI | GAANNNNTTC | 1 cut(s) | 690 |
| PfeI | GAWTC | 8 cut(s) | 440, 478, 784, 930, 1237, 1288, 1294, 1331 |
| PflFI | GACNNNGTC | 1 cut(s) | 1068 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 827, 1175 |
| PfoI | TCCNGGA | 2 cut(s) | 251, 1060 |
| PkrI | GCNGC | 5 cut(s) | 106, 433, 565, 1193, 1396 |
| PleI | GAGTC | 3 cut(s) | 191, 1099, 1249 |
| PpsI | GAGTC | 3 cut(s) | 191, 1099, 1249 |
| PscI | ACATGT | 1 cut(s) | 843 |
| PshBI | ATTAAT | 1 cut(s) | 636 |
| Psp6I | CCWGG | 4 cut(s) | 251, 556, 904, 1110 |
| PspGI | CCWGG | 4 cut(s) | 251, 556, 904, 1110 |
| PspN4I | GGNNCC | 6 cut(s) | 376, 581, 832, 1167, 1345, 1375 |
| PspPI | GGNCC | 2 cut(s) | 1027, 1070 |
| PstI | CTGCAG | 1 cut(s) | 568 |
| PsuI | RGATCY | 4 cut(s) | 11, 1085, 1343, 1373 |
| PsyI | GACNNNGTC | 1 cut(s) | 1068 |
| PvuII | CAGCTG | 1 cut(s) | 44 |
| RsaI | GTAC | 3 cut(s) | 726, 753, 842 |
| RsaNI | GTAC | 3 cut(s) | 725, 752, 841 |
| RseI | CAYNNNNRTG | 2 cut(s) | 714, 1263 |
| SaqAI | TTAA | 5 cut(s) | 17, 231, 324, 636, 1211 |
| SatI | GCNGC | 5 cut(s) | 105, 432, 564, 1192, 1395 |
| Sau96I | GGNCC | 2 cut(s) | 1027, 1070 |
| SchI | GAGTC | 3 cut(s) | 191, 1099, 1249 |
| ScrFI | CCNGG | 6 cut(s) | 253, 558, 906, 1062, 1112, 1341 |
| SduI | GDGCHC | 1 cut(s) | 835 |
| SexAI | ACCWGGT | 1 cut(s) | 556 |
| SfaNI | GCATC | 7 cut(s) | 91, 418, 419, 535, 748, 852, 1138 |
| SfcI | CTRYAG | 2 cut(s) | 237, 564 |
| SinI | GGWCC | 2 cut(s) | 1027, 1070 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 714, 1263 |
| SmlI | CTYRAG | 1 cut(s) | 1242 |
| SmoI | CTYRAG | 1 cut(s) | 1242 |
| Sse9I | AATT | 8 cut(s) | 268, 490, 534, 823, 892, 1140, 1153, 1315 |
| SsiI | CCGC | 4 cut(s) | 451, 501, 539, 1191 |
| SspMI | CTAG | 5 cut(s) | 114, 138, 225, 576, 663 |
| StyD4I | CCNGG | 6 cut(s) | 251, 556, 904, 1060, 1110, 1339 |
| StyI | CCWWGG | 5 cut(s) | 7, 169, 1169, 1347, 1411 |
| TaaI | ACNGT | 3 cut(s) | 840, 1010, 1280 |
| TaiI | ACGT | 2 cut(s) | 723, 1263 |
| TaqI | TCGA | 4 cut(s) | 164, 532, 961, 1227 |
| TaqII | GACCGA | 2 cut(s) | 898, 1044 |
| TasI | AATT | 8 cut(s) | 268, 490, 534, 823, 892, 1140, 1153, 1315 |
| TatI | WGTACW | 2 cut(s) | 724, 751 |
| TauI | GCSGC | 1 cut(s) | 1194 |
| TfiI | GAWTC | 8 cut(s) | 440, 478, 784, 930, 1237, 1288, 1294, 1331 |
| Tru1I | TTAA | 5 cut(s) | 17, 231, 324, 636, 1211 |
| Tru9I | TTAA | 5 cut(s) | 17, 231, 324, 636, 1211 |
| TscAI | CASTG | 1 cut(s) | 1015 |
| TseI | GCWGC | 4 cut(s) | 104, 431, 563, 1394 |
| TspDTI | ATGAA | 7 cut(s) | 654, 758, 821, 840, 1240, 1316, 1408 |
| TspGWI | ACGGA | 1 cut(s) | 1026 |
| TspRI | CASTG | 1 cut(s) | 1015 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1068 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 827, 1175 |
| VpaK11BI | GGWCC | 2 cut(s) | 1027, 1070 |
| VspI | ATTAAT | 1 cut(s) | 636 |
| XapI | RAATTY | 2 cut(s) | 823, 1315 |
| XceI | RCATGY | 2 cut(s) | 847, 1394 |
| XmnI | GAANNNNTTC | 1 cut(s) | 690 |
| XspI | CTAG | 5 cut(s) | 114, 138, 225, 576, 663 |