Rh2AG475400

KH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
69417156 .. 69421320
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG475400.1

Sequence Viewer

Length: 1446 bp
ATGATCCATGGATCTTTAATAAGGATAACAGGAGACTTTTCAGCTGTGAAGAAAGCACTTCTGTCTGTTTCTGGTTGCCTTCTGGATAATGCTAAGGTAGATGCAGCCAACTCTAGCGCTACCAAAGTCGCCAACTCTAGCGCTACCAAAGTTTCTGGGGGGTCGATCCATGGAACTGGTATGCCTGCACAAGTTGACTCTGTTCCTCATCGGGGTTTTGTGTCTAGCTTTAATGCTGTAGATTATCAGTCCAGGAGTTACTCTTCTAATTCTGCACCAGATAACAGCAGTCAACGAATGGCTATGGAAGAAGAGGTGGTATTTAAGTTGTTATGCCAACATGATAAGGTTGGTAGTCTGATAGGGAAAGGTGGCTCCATTATACGAACTTTTCAAAGTGAAACAGGTGCATCTATCAAGATTGTTGATGCTGCACCTGATTCGGATGAGCGGGTTGTTGTCATATCTGCACAAGAGAATCCTGAGCAAAATTATTCCCCCGCACAAGAAGCTGTTATGCGTGTGCATCATCGAATTGCGGAGATTGGATTTGAACCTGGTGCTGCAGTAGTGGCTAGGCTCCTCCTACATCCACAGCAGATAGGTTGTTTATTGGGTAAAGGAGGTTTTATTATTAATGAAATGAGGCGAGCTACTGGTGCTAGTATTAGGATTTTTCCAAAAGAACAAGTTCAGAAATCTGCTTACCACCATGATGACGTTGTACAGGTTATTGGAAGCTTGCAGTCTGTACAGGATGCACTCTTTCATATCACAAGTAGGATTCGTGAAGCCATATTCCCAATGAAACAATCATATCCAAATTTTGGTGCCCCACCGTACATGTCTTCATTTCCTGAGATGCCTCCCCCCTCATTTAGACCGAGGCATAATTCAACCTCCCCTGGTGCGTATCCTTCACCTGTTGGATTCCATCATGGAATGGATCATTCTGCTTTTCGATCCCAACCTCCAGACCACCAGTCCCCATTTTCACATGGGGATCACAGTGGTCTGTCTCACATGGACCGAGTTCCGTATTCTTATGGTGGTGAGCGTCCGGGACATGGTCCGGCATTTGAGAGATCTTCTCCAAGAGCGTGGACTCCCCAGGGAGTAAGCTCTGGAAACCTAAGGGAAATTGGAGATGCTAATTTGGGCTTGGCTCCAAGGAGTGGGTCTCTACGAAGCGGCTGTCAACCACCTCACTTAACCAGCACAACCATCGAGATCATGATTCCTCAAGCATTCATGACTCACGTTTATGGAGAGAACAACAGTAATCTGAATCAGATTCGGCAGATATCAGGTGCAAATTTAGTTGTTCATGATTCAAAACCCGGATCCTTGGAAACCCAAGTTGTAGTATCCGGATCCCCAGATAAAACACATGCTGCTCAGAGCCTTATCCATGGTTTCATCCTTTGTGGTCAGACACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

51.65

Weight (kDa)

7.4

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 108 - 159 9.3e-14 KH domain
KH_1 PF00013 193 - 259 1.8e-11 KH domain
KH_1 PF00013 408 - 471 4.6e-10 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 830
AccB7I CCANNNNNTGG 2 cut(s) 827, 1175
AccBSI CCGCTC 1 cut(s) 451
AccIII TCCGGA 1 cut(s) 1370
AciI CCGC 4 cut(s) 451, 501, 539, 1191
AclWI GGATC 9 cut(s) 19, 160, 954, 957, 1011, 1338, 1351, 1368, 1381
AcsI RAATTY 2 cut(s) 823, 1315
AfaI GTAC 3 cut(s) 726, 753, 842
AfeI AGCGCT 2 cut(s) 118, 142
AfiI CCNNNNNNNGG 4 cut(s) 212, 827, 1067, 1175
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 4 cut(s) 395, 554, 897, 1335
AhdI GACNNNNNGTC 1 cut(s) 982
AjnI CCWGG 4 cut(s) 251, 556, 904, 1110
AluBI AGCT 6 cut(s) 44, 228, 512, 653, 741, 1122
AluI AGCT 6 cut(s) 44, 228, 512, 653, 741, 1122
Alw26I GTCTC 3 cut(s) 27, 1023, 1185
AlwI GGATC 9 cut(s) 19, 160, 954, 957, 1011, 1338, 1351, 1368, 1381
Aor13HI TCCGGA 1 cut(s) 1370
Aor51HI AGCGCT 2 cut(s) 118, 142
ApeKI GCWGC 4 cut(s) 104, 431, 563, 1394
ApoI RAATTY 2 cut(s) 823, 1315
ArsI GACNNNNNNTTYG 2 cut(s) 1180, 1212
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 2 cut(s) 119, 143
AspS9I GGNCC 2 cut(s) 1027, 1070
AsuC2I CCSGG 2 cut(s) 1062, 1341
AsuHPI GGTGA 2 cut(s) 912, 1064
AvaII GGWCC 2 cut(s) 1027, 1070
AxyI CCTNAGG 1 cut(s) 1133
BaeGI GKGCMC 1 cut(s) 835
BamHI GGATCC 2 cut(s) 1343, 1373
BanI GGYRCC 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 840
BbvI GCAGC 4 cut(s) 116, 418, 550, 1381
BccI CCATC 2 cut(s) 942, 1232
BcgI CGANNNNNNTGC 4 cut(s) 423, 457, 1207, 1241
BciT130I CCWGG 4 cut(s) 253, 558, 906, 1112
BciVI GTATCC 2 cut(s) 924, 1378
BcnI CCSGG 2 cut(s) 1062, 1341
BcoDI GTCTC 3 cut(s) 27, 1023, 1185
BfaI CTAG 5 cut(s) 114, 138, 225, 576, 663
BfmI CTRYAG 2 cut(s) 237, 564
BfoI RGCGCY 2 cut(s) 120, 144
BfuI GTATCC 2 cut(s) 924, 1378
BglII AGATCT 1 cut(s) 1085
BisI GCNGC 5 cut(s) 105, 432, 564, 1192, 1395
BlsI GCNGC 5 cut(s) 106, 433, 565, 1193, 1396
Bme1390I CCNGG 6 cut(s) 253, 558, 906, 1062, 1112, 1341
Bme18I GGWCC 2 cut(s) 1027, 1070
BmeRI GACNNNNNGTC 1 cut(s) 982
BmgT120I GGNCC 2 cut(s) 1027, 1070
BmiI GGNNCC 6 cut(s) 376, 581, 832, 1167, 1345, 1375
BmrFI CCNGG 6 cut(s) 253, 558, 906, 1062, 1112, 1341
BmsI GCATC 7 cut(s) 91, 418, 419, 535, 748, 852, 1138
BpiI GAAGAC 1 cut(s) 840
BplI GAGNNNNNCTC 4 cut(s) 1075, 1107, 1165, 1197
BpmI CTGGAG 1 cut(s) 957
Bpu10I CCTNAGC 2 cut(s) 93, 483
BpuEI CTTGAG 1 cut(s) 1227
BpuMI CCSGG 2 cut(s) 1062, 1341
BsaI GGTCTC 1 cut(s) 1185
BsaJI CCNNGG 9 cut(s) 7, 169, 884, 904, 1110, 1111, 1169, 1347, 1411
BsaWI WCCGGW 1 cut(s) 1370
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 827, 1067, 1175
Bse1I ACTGG 3 cut(s) 181, 661, 982
Bse21I CCTNAGG 1 cut(s) 1133
BseAI TCCGGA 1 cut(s) 1370
BseBI CCWGG 4 cut(s) 253, 558, 906, 1112
BseDI CCNNGG 9 cut(s) 7, 169, 884, 904, 1110, 1111, 1169, 1347, 1411
BseGI GGATG 4 cut(s) 451, 589, 763, 1419
BseLI CCNNNNNNNGG 4 cut(s) 212, 827, 1067, 1175
BseMII CTCAG 3 cut(s) 474, 849, 1412
BseNI ACTGG 3 cut(s) 181, 661, 982
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 4 cut(s) 116, 418, 550, 1381
BsgI GTGCAG 4 cut(s) 171, 258, 417, 453
BshNI GGYRCC 1 cut(s) 830
BsiSI CCGG 4 cut(s) 1061, 1073, 1341, 1371
BslFI GGGAC 2 cut(s) 970, 1077
BslI CCNNNNNNNGG 4 cut(s) 212, 827, 1067, 1175
BsmAI GTCTC 3 cut(s) 27, 1023, 1185
BsmFI GGGAC 2 cut(s) 970, 1077
BsmI GAATGC 1 cut(s) 1247
Bso31I GGTCTC 1 cut(s) 1185
Bsp1286I GDGCHC 1 cut(s) 835
Bsp13I TCCGGA 1 cut(s) 1370
Bsp1407I TGTACA 2 cut(s) 724, 751
Bsp19I CCATGG 3 cut(s) 7, 169, 1411
BspACI CCGC 4 cut(s) 451, 501, 539, 1191
BspCNI CTCAG 3 cut(s) 475, 850, 1411
BspEI TCCGGA 1 cut(s) 1370
BspHI TCATGA 3 cut(s) 1233, 1251, 1327
BspLI GGNNCC 6 cut(s) 376, 581, 832, 1167, 1345, 1375
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 9 cut(s) 19, 160, 954, 957, 1011, 1338, 1351, 1368, 1381
BspT107I GGYRCC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 1185
BsrBI CCGCTC 1 cut(s) 451
BsrGI TGTACA 2 cut(s) 724, 751
BsrI ACTGG 3 cut(s) 181, 661, 982
BssECI CCNNGG 9 cut(s) 7, 169, 884, 904, 1110, 1111, 1169, 1347, 1411
BssT1I CCWWGG 5 cut(s) 7, 169, 1169, 1347, 1411
Bst2UI CCWGG 4 cut(s) 253, 558, 906, 1112
Bst4CI ACNGT 3 cut(s) 840, 1010, 1280
Bst6I CTCTTC 2 cut(s) 268, 306
BstAUI TGTACA 2 cut(s) 724, 751
BstC8I GCNNGC 3 cut(s) 186, 651, 743
BstDEI CTNAG 5 cut(s) 93, 483, 858, 1133, 1398
BstDSI CCRYGG 3 cut(s) 7, 169, 1411
BstF5I GGATG 4 cut(s) 451, 589, 763, 1419
BstH2I RGCGCY 2 cut(s) 120, 144
BstHHI GCGC 2 cut(s) 119, 143
BstMAI GTCTC 3 cut(s) 27, 1023, 1185
BstMWI GCNNNNNNNGC 3 cut(s) 509, 572, 659
BstNI CCWGG 4 cut(s) 253, 558, 906, 1112
BstNSI RCATGY 2 cut(s) 847, 1394
BstSCI CCNGG 6 cut(s) 251, 556, 904, 1060, 1110, 1339
BstSFI CTRYAG 2 cut(s) 237, 564
BstSLI GKGCMC 1 cut(s) 835
BstV1I GCAGC 4 cut(s) 116, 418, 550, 1381
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 4 cut(s) 11, 1085, 1343, 1373
BstXI CCANNNNNNTGG 2 cut(s) 176, 1101
BstYI RGATCY 4 cut(s) 11, 1085, 1343, 1373
Bsu36I CCTNAGG 1 cut(s) 1133
BsuI GTATCC 2 cut(s) 924, 1378
BtgI CCRYGG 3 cut(s) 7, 169, 1411
BtsCI GGATG 4 cut(s) 451, 589, 763, 1419
BtsIMutI CAGTG 1 cut(s) 1015
Cac8I GCNNGC 3 cut(s) 186, 651, 743
CciI TCATGA 3 cut(s) 1233, 1251, 1327
CfoI GCGC 2 cut(s) 119, 143
Cfr13I GGNCC 2 cut(s) 1027, 1070
CseI GACGC 1 cut(s) 1046
CsiI ACCWGGT 1 cut(s) 556
Csp6I GTAC 3 cut(s) 725, 752, 841
CviQI GTAC 3 cut(s) 725, 752, 841
DdeI CTNAG 5 cut(s) 93, 483, 858, 1133, 1398
DriI GACNNNNNGTC 1 cut(s) 982
Eam1104I CTCTTC 2 cut(s) 268, 306
Eam1105I GACNNNNNGTC 1 cut(s) 982
EarI CTCTTC 2 cut(s) 268, 306
Eco130I CCWWGG 5 cut(s) 7, 169, 1169, 1347, 1411
Eco31I GGTCTC 1 cut(s) 1185
Eco32I GATATC 1 cut(s) 1305
Eco47I GGWCC 2 cut(s) 1027, 1070
Eco47III AGCGCT 2 cut(s) 118, 142
Eco81I CCTNAGG 1 cut(s) 1133
EcoRII CCWGG 4 cut(s) 251, 556, 904, 1110
EcoRV GATATC 1 cut(s) 1305
EcoT14I CCWWGG 5 cut(s) 7, 169, 1169, 1347, 1411
ErhI CCWWGG 5 cut(s) 7, 169, 1169, 1347, 1411
FaqI GGGAC 2 cut(s) 970, 1077
FauI CCCGC 2 cut(s) 444, 508
Fnu4HI GCNGC 5 cut(s) 105, 432, 564, 1192, 1395
FokI GGATG 4 cut(s) 458, 576, 770, 1406
Fsp4HI GCNGC 5 cut(s) 105, 432, 564, 1192, 1395
FspBI CTAG 5 cut(s) 114, 138, 225, 576, 663
GlaI GCGC 2 cut(s) 118, 142
GluI GCNGC 5 cut(s) 105, 432, 564, 1192, 1395
GsuI CTGGAG 1 cut(s) 957
HaeII RGCGCY 2 cut(s) 120, 144
HapII CCGG 4 cut(s) 1061, 1073, 1341, 1371
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 2 cut(s) 119, 143
Hin6I GCGC 2 cut(s) 117, 141
HinP1I GCGC 2 cut(s) 117, 141
HincII GTYRAC 3 cut(s) 196, 293, 1199
HindII GTYRAC 3 cut(s) 196, 293, 1199
HindIII AAGCTT 1 cut(s) 739
HpaII CCGG 4 cut(s) 1061, 1073, 1341, 1371
HphI GGTGA 2 cut(s) 912, 1064
Hpy166II GTNNAC 4 cut(s) 196, 293, 1104, 1199
Hpy188I TCNGA 7 cut(s) 360, 445, 696, 1287, 1293, 1401, 1434
Hpy8I GTNNAC 4 cut(s) 196, 293, 1104, 1199
HpyAV CCTTC 2 cut(s) 89, 927
HpyCH4III ACNGT 3 cut(s) 840, 1010, 1280
HpyCH4IV ACGT 2 cut(s) 720, 1260
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 572, 659
HpyF3I CTNAG 5 cut(s) 93, 483, 858, 1133, 1398
HpySE526I ACGT 2 cut(s) 720, 1260
HspAI GCGC 2 cut(s) 117, 141
Kpn2I TCCGGA 1 cut(s) 1370
LmnI GCTCC 3 cut(s) 380, 585, 1171
Lsp1109I GCAGC 4 cut(s) 116, 418, 550, 1381
LweI GCATC 7 cut(s) 91, 418, 419, 535, 748, 852, 1138
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 5 cut(s) 114, 138, 225, 576, 663
MaeII ACGT 2 cut(s) 720, 1260
MaeIII GTNAC 1 cut(s) 257
MbiI CCGCTC 1 cut(s) 451
MboII GAAGA 6 cut(s) 61, 255, 320, 323, 840, 1080
MflI RGATCY 4 cut(s) 11, 1085, 1343, 1373
MhlI GDGCHC 1 cut(s) 835
MluCI AATT 8 cut(s) 268, 490, 534, 823, 892, 1140, 1153, 1315
MlyI GAGTC 3 cut(s) 191, 1099, 1249
MmeI TCCRAC 1 cut(s) 907
MroI TCCGGA 1 cut(s) 1370
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 5 cut(s) 17, 231, 324, 636, 1211
MslI CAYNNNNRTG 2 cut(s) 714, 1263
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 4 cut(s) 1061, 1073, 1341, 1371
MspR9I CCNGG 6 cut(s) 253, 558, 906, 1062, 1112, 1341
Mva1269I GAATGC 1 cut(s) 1247
MvaI CCWGG 4 cut(s) 253, 558, 906, 1112
MwoI GCNNNNNNNGC 3 cut(s) 509, 572, 659
NciI CCSGG 2 cut(s) 1062, 1341
NcoI CCATGG 3 cut(s) 7, 169, 1411
NlaIV GGNNCC 6 cut(s) 376, 581, 832, 1167, 1345, 1375
NspI RCATGY 2 cut(s) 847, 1394
PagI TCATGA 3 cut(s) 1233, 1251, 1327
PasI CCCWGGG 1 cut(s) 1111
PciI ACATGT 1 cut(s) 843
PctI GAATGC 1 cut(s) 1247
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 8 cut(s) 440, 478, 784, 930, 1237, 1288, 1294, 1331
PflFI GACNNNGTC 1 cut(s) 1068
PflMI CCANNNNNTGG 2 cut(s) 827, 1175
PfoI TCCNGGA 2 cut(s) 251, 1060
PkrI GCNGC 5 cut(s) 106, 433, 565, 1193, 1396
PleI GAGTC 3 cut(s) 191, 1099, 1249
PpsI GAGTC 3 cut(s) 191, 1099, 1249
PscI ACATGT 1 cut(s) 843
PshBI ATTAAT 1 cut(s) 636
Psp6I CCWGG 4 cut(s) 251, 556, 904, 1110
PspGI CCWGG 4 cut(s) 251, 556, 904, 1110
PspN4I GGNNCC 6 cut(s) 376, 581, 832, 1167, 1345, 1375
PspPI GGNCC 2 cut(s) 1027, 1070
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 4 cut(s) 11, 1085, 1343, 1373
PsyI GACNNNGTC 1 cut(s) 1068
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 726, 753, 842
RsaNI GTAC 3 cut(s) 725, 752, 841
RseI CAYNNNNRTG 2 cut(s) 714, 1263
SaqAI TTAA 5 cut(s) 17, 231, 324, 636, 1211
SatI GCNGC 5 cut(s) 105, 432, 564, 1192, 1395
Sau96I GGNCC 2 cut(s) 1027, 1070
SchI GAGTC 3 cut(s) 191, 1099, 1249
ScrFI CCNGG 6 cut(s) 253, 558, 906, 1062, 1112, 1341
SduI GDGCHC 1 cut(s) 835
SexAI ACCWGGT 1 cut(s) 556
SfaNI GCATC 7 cut(s) 91, 418, 419, 535, 748, 852, 1138
SfcI CTRYAG 2 cut(s) 237, 564
SinI GGWCC 2 cut(s) 1027, 1070
SmiMI CAYNNNNRTG 2 cut(s) 714, 1263
SmlI CTYRAG 1 cut(s) 1242
SmoI CTYRAG 1 cut(s) 1242
Sse9I AATT 8 cut(s) 268, 490, 534, 823, 892, 1140, 1153, 1315
SsiI CCGC 4 cut(s) 451, 501, 539, 1191
SspMI CTAG 5 cut(s) 114, 138, 225, 576, 663
StyD4I CCNGG 6 cut(s) 251, 556, 904, 1060, 1110, 1339
StyI CCWWGG 5 cut(s) 7, 169, 1169, 1347, 1411
TaaI ACNGT 3 cut(s) 840, 1010, 1280
TaiI ACGT 2 cut(s) 723, 1263
TaqI TCGA 4 cut(s) 164, 532, 961, 1227
TaqII GACCGA 2 cut(s) 898, 1044
TasI AATT 8 cut(s) 268, 490, 534, 823, 892, 1140, 1153, 1315
TatI WGTACW 2 cut(s) 724, 751
TauI GCSGC 1 cut(s) 1194
TfiI GAWTC 8 cut(s) 440, 478, 784, 930, 1237, 1288, 1294, 1331
Tru1I TTAA 5 cut(s) 17, 231, 324, 636, 1211
Tru9I TTAA 5 cut(s) 17, 231, 324, 636, 1211
TscAI CASTG 1 cut(s) 1015
TseI GCWGC 4 cut(s) 104, 431, 563, 1394
TspDTI ATGAA 7 cut(s) 654, 758, 821, 840, 1240, 1316, 1408
TspGWI ACGGA 1 cut(s) 1026
TspRI CASTG 1 cut(s) 1015
Tth111I GACNNNGTC 1 cut(s) 1068
Van91I CCANNNNNTGG 2 cut(s) 827, 1175
VpaK11BI GGWCC 2 cut(s) 1027, 1070
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 2 cut(s) 823, 1315
XceI RCATGY 2 cut(s) 847, 1394
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 5 cut(s) 114, 138, 225, 576, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.