Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009557

Physical Location & Seq

Genomic Coordinates Reverse (-)

18975389 .. 18979890

Gene Structure 4502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCTGCACAAGTTGACTCTGTTCCTCATCGGGGTTTTGTGTCTAGCTTTAATGCTGCAGATTATCAGTCCAGGAGTTACTCTTCTAATTCTGCGCCAGATAACAGCAGTCAACGAATGGCTATGGAAGAAGAGGTCGTATTTAAGTTGTTATGCCAACATGATAAGGTTGGTAGTCTGATAGGGAAAGGTGGCTCCATTATACGAACTTTTCAAAGTGAAACAGGTGCATCTATCAAGATTGTTGATGCTGCACCTGATTCGGATGAGCGGGTTGTTGTCATATCTGCACAAGAGAATCCTGAGCAAAATTATTCCCCCGCACAAGAAGCTGTTATGCGTGTGCATCATCGAATTGCGGAGATTGGATTTGAACCTGGTGCTGCAGTAGTGGCTAGGCTCCTCCTACATCCACAGCAGATAGGTTGTTTATTGGGTAAAGGAGGTTTCATTATTAATGAAATGAGGCGAGCTACTGGTGCTAGTATTAGGATTTTTCCAAAAGAACAAGTTCAGAAATCTGCTTACCACCATGATGACGTTGTACAGGTTATTGGAAGCTTGCAGTCTGTACAGGATGCACTCTTTCATATCACAAGTAGGATTCGTGAAGCCATATTCCCAATGAAACAATCATATCCAAATTTTGGTGTCCCACCGTACATGTCTTCATTTCCTGAGATGCCTCCCCCTCATTTAGACCGAGGCATAATTCATCCTCCCCTGGTGCGTATCCTTCACCTGTTGGATTCCATCATGGAATGGATCATTCTGCTTTTCGATCCCAACCTCCAGACCACCAGTCCCCATTTTCACATGGGGATCACAGTGGTCTATCTCACATGGACCGAGTTCCGTATTCTTATGGTGGTGAGCGTCCAGGACATGGTCCGGCATTTGAGAGATCTTCTCCAAGAGCGTGGACTCCCCAGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

312

Amino Acids

34.99

Weight (kDa)

6.27

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	48 - 99	4.9e-14	KH domain
KH_1	PF00013	133 - 199	9e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51580
fragaria_vesca	FvH4_6g37150 FvH4_6g37150 FvH4_6g37150
malus_domestica	MD09G1161100.v1.1 MD17G1146900.v1.1
prunus_persica	Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1
pyrus_communis	pycom09g07950 pycom17g13960
rosa_chinensis	RchiOBHm_Chr2g0149721
rosa_laevigata	RLG00000020442
rosa_multiflora	Rmu_sc0001091.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097760
rosa_rugosa	Rorug02G0415600 Rorug02G0415700 Rorug02G0415800
rosa_samantha	Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000
rosa_wichuraiana	Rw2G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	647, 886
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	3 cut(s)	271, 321, 359
AclWI	GGATC	3 cut(s)	773, 776, 830
AcsI	RAATTY	1 cut(s)	643
AfaI	GTAC	3 cut(s)	546, 573, 662
AfiI	CCNNNNNNNGG	3 cut(s)	32, 647, 886
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	2 cut(s)	215, 374
AhdI	GACNNNNNGTC	1 cut(s)	801
AjnI	CCWGG	5 cut(s)	71, 376, 723, 879, 929
AluBI	AGCT	4 cut(s)	48, 332, 473, 561
AluI	AGCT	4 cut(s)	48, 332, 473, 561
AlwI	GGATC	3 cut(s)	773, 776, 830
ApeKI	GCWGC	3 cut(s)	56, 251, 383
ApoI	RAATTY	1 cut(s)	643
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	846, 889
AsuHPI	GGTGA	2 cut(s)	731, 883
AvaII	GGWCC	2 cut(s)	846, 889
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	43, 238, 370
BccI	CCATC	1 cut(s)	761
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	5 cut(s)	73, 378, 725, 881, 931
BciVI	GTATCC	1 cut(s)	743
BfaI	CTAG	3 cut(s)	45, 396, 483
BfmI	CTRYAG	2 cut(s)	57, 384
BfuI	GTATCC	1 cut(s)	743
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	3 cut(s)	57, 252, 384
BlsI	GCNGC	3 cut(s)	58, 253, 385
Bme1390I	CCNGG	5 cut(s)	73, 378, 725, 881, 931
Bme18I	GGWCC	2 cut(s)	846, 889
BmeRI	GACNNNNNGTC	1 cut(s)	801
BmgT120I	GGNCC	2 cut(s)	846, 889
BmiI	GGNNCC	2 cut(s)	196, 401
BmrFI	CCNGG	5 cut(s)	73, 378, 725, 881, 931
BmsI	GCATC	5 cut(s)	238, 239, 355, 568, 672
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	894, 926
BpmI	CTGGAG	1 cut(s)	776
Bpu10I	CCTNAGC	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	703, 723, 929, 930
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 647, 886
Bse1I	ACTGG	2 cut(s)	481, 801
BseBI	CCWGG	5 cut(s)	73, 378, 725, 881, 931
BseDI	CCNNGG	4 cut(s)	703, 723, 929, 930
BseGI	GGATG	4 cut(s)	271, 409, 583, 715
BseLI	CCNNNNNNNGG	3 cut(s)	32, 647, 886
BseMII	CTCAG	2 cut(s)	294, 669
BseNI	ACTGG	2 cut(s)	481, 801
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	43, 238, 370
BsgI	GTGCAG	2 cut(s)	237, 273
BsiSI	CCGG	1 cut(s)	892
BslFI	GGGAC	2 cut(s)	638, 789
BslI	CCNNNNNNNGG	3 cut(s)	32, 647, 886
BsmFI	GGGAC	2 cut(s)	638, 789
Bsp1407I	TGTACA	2 cut(s)	544, 571
Bsp143I	GATC	4 cut(s)	765, 781, 822, 904
BspACI	CCGC	3 cut(s)	271, 321, 359
BspCNI	CTCAG	2 cut(s)	295, 670
BspLI	GGNNCC	2 cut(s)	196, 401
BspMAI	CTGCAG	2 cut(s)	61, 388
BspPI	GGATC	3 cut(s)	773, 776, 830
BsrBI	CCGCTC	1 cut(s)	271
BsrGI	TGTACA	2 cut(s)	544, 571
BsrI	ACTGG	2 cut(s)	481, 801
BssECI	CCNNGG	4 cut(s)	703, 723, 929, 930
BssMI	GATC	4 cut(s)	765, 781, 822, 904
Bst2UI	CCWGG	5 cut(s)	73, 378, 725, 881, 931
Bst4CI	ACNGT	2 cut(s)	660, 829
Bst6I	CTCTTC	2 cut(s)	88, 126
BstAUI	TGTACA	2 cut(s)	544, 571
BstC8I	GCNNGC	3 cut(s)	6, 471, 563
BstDEI	CTNAG	2 cut(s)	303, 678
BstF5I	GGATG	4 cut(s)	271, 409, 583, 715
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	4 cut(s)	768, 784, 825, 907
BstMBI	GATC	4 cut(s)	765, 781, 822, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 392, 479
BstNI	CCWGG	5 cut(s)	73, 378, 725, 881, 931
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	5 cut(s)	71, 376, 723, 879, 929
BstSFI	CTRYAG	2 cut(s)	57, 384
BstV1I	GCAGC	3 cut(s)	43, 238, 370
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	904
BstXI	CCANNNNNNTGG	1 cut(s)	920
BstYI	RGATCY	1 cut(s)	904
BsuI	GTATCC	1 cut(s)	743
BtsCI	GGATG	4 cut(s)	271, 409, 583, 715
BtsIMutI	CAGTG	1 cut(s)	834
Cac8I	GCNNGC	3 cut(s)	6, 471, 563
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	846, 889
CseI	GACGC	1 cut(s)	865
CsiI	ACCWGGT	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	545, 572, 661
CviAII	CATG	7 cut(s)	161, 533, 664, 757, 817, 843, 886
CviJI	RGCY	9 cut(s)	48, 122, 195, 332, 395, 400, 473, 561, 614
CviKI_1	RGCY	9 cut(s)	48, 122, 195, 332, 395, 400, 473, 561, 614
CviQI	GTAC	3 cut(s)	545, 572, 661
DdeI	CTNAG	2 cut(s)	303, 678
DpnI	GATC	4 cut(s)	767, 783, 824, 906
DpnII	GATC	4 cut(s)	765, 781, 822, 904
DriI	GACNNNNNGTC	1 cut(s)	801
Eam1104I	CTCTTC	2 cut(s)	88, 126
Eam1105I	GACNNNNNGTC	1 cut(s)	801
EarI	CTCTTC	2 cut(s)	88, 126
Eco47I	GGWCC	2 cut(s)	846, 889
EcoRII	CCWGG	5 cut(s)	71, 376, 723, 879, 929
FaeI	CATG	7 cut(s)	164, 536, 667, 760, 820, 846, 889
FaqI	GGGAC	2 cut(s)	638, 789
FatI	CATG	7 cut(s)	160, 532, 663, 756, 816, 842, 885
FauI	CCCGC	2 cut(s)	264, 328
Fnu4HI	GCNGC	3 cut(s)	57, 252, 384
FokI	GGATG	4 cut(s)	278, 396, 590, 702
Fsp4HI	GCNGC	3 cut(s)	57, 252, 384
FspBI	CTAG	3 cut(s)	45, 396, 483
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	57, 252, 384
GsuI	CTGGAG	1 cut(s)	776
HapII	CCGG	1 cut(s)	892
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	7 cut(s)	164, 536, 667, 760, 820, 846, 889
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	16, 113
HindII	GTYRAC	2 cut(s)	16, 113
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	6 cut(s)	17, 260, 298, 604, 749, 924
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	2 cut(s)	731, 883
Hpy166II	GTNNAC	3 cut(s)	16, 113, 923
Hpy188I	TCNGA	3 cut(s)	180, 265, 516
Hpy188III	TCNNGA	5 cut(s)	238, 302, 608, 677, 793
Hpy8I	GTNNAC	3 cut(s)	16, 113, 923
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	2 cut(s)	660, 829
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	9 cut(s)	8, 59, 230, 254, 290, 346, 386, 565, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 392, 479
HpyF3I	CTNAG	2 cut(s)	303, 678
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	7 cut(s)	164, 536, 667, 760, 820, 846, 889
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	765, 781, 822, 904
LmnI	GCTCC	2 cut(s)	200, 405
Lsp1109I	GCAGC	3 cut(s)	43, 238, 370
LweI	GCATC	5 cut(s)	238, 239, 355, 568, 672
MabI	ACCWGGT	1 cut(s)	376
MaeI	CTAG	3 cut(s)	45, 396, 483
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	767, 783, 824, 906
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	4 cut(s)	765, 781, 822, 904
MboII	GAAGA	5 cut(s)	75, 140, 143, 660, 899
MflI	RGATCY	1 cut(s)	904
MluCI	AATT	5 cut(s)	88, 310, 354, 643, 711
MlyI	GAGTC	2 cut(s)	11, 918
MmeI	TCCRAC	1 cut(s)	726
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	3 cut(s)	51, 144, 456
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	892
MspR9I	CCNGG	5 cut(s)	73, 378, 725, 881, 931
MvaI	CCWGG	5 cut(s)	73, 378, 725, 881, 931
MwoI	GCNNNNNNNGC	3 cut(s)	329, 392, 479
NdeII	GATC	4 cut(s)	765, 781, 822, 904
NlaIII	CATG	7 cut(s)	164, 536, 667, 760, 820, 846, 889
NlaIV	GGNNCC	2 cut(s)	196, 401
NspI	RCATGY	1 cut(s)	667
PasI	CCCWGGG	1 cut(s)	930
PciI	ACATGT	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	260, 298, 604, 749
PflFI	GACNNNGTC	1 cut(s)	887
PflMI	CCANNNNNTGG	2 cut(s)	647, 886
PfoI	TCCNGGA	2 cut(s)	71, 879
PkrI	GCNGC	3 cut(s)	58, 253, 385
PleI	GAGTC	2 cut(s)	11, 918
PpsI	GAGTC	2 cut(s)	11, 918
PscI	ACATGT	1 cut(s)	663
PshBI	ATTAAT	1 cut(s)	456
Psp6I	CCWGG	5 cut(s)	71, 376, 723, 879, 929
PspGI	CCWGG	5 cut(s)	71, 376, 723, 879, 929
PspN4I	GGNNCC	2 cut(s)	196, 401
PspPI	GGNCC	2 cut(s)	846, 889
PstI	CTGCAG	2 cut(s)	61, 388
PsuI	RGATCY	1 cut(s)	904
PsyI	GACNNNGTC	1 cut(s)	887
RsaI	GTAC	3 cut(s)	546, 573, 662
RsaNI	GTAC	3 cut(s)	545, 572, 661
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	51, 144, 456
SatI	GCNGC	3 cut(s)	57, 252, 384
Sau3AI	GATC	4 cut(s)	765, 781, 822, 904
Sau96I	GGNCC	2 cut(s)	846, 889
SchI	GAGTC	2 cut(s)	11, 918
ScrFI	CCNGG	5 cut(s)	73, 378, 725, 881, 931
SexAI	ACCWGGT	1 cut(s)	376
SfaNI	GCATC	5 cut(s)	238, 239, 355, 568, 672
SfcI	CTRYAG	2 cut(s)	57, 384
SinI	GGWCC	2 cut(s)	846, 889
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	88, 310, 354, 643, 711
SsiI	CCGC	3 cut(s)	271, 321, 359
SspMI	CTAG	3 cut(s)	45, 396, 483
StyD4I	CCNGG	5 cut(s)	71, 376, 723, 879, 929
TaaI	ACNGT	2 cut(s)	660, 829
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	2 cut(s)	352, 780
TaqII	GACCGA	2 cut(s)	717, 863
TasI	AATT	5 cut(s)	88, 310, 354, 643, 711
TatI	WGTACW	2 cut(s)	544, 571
TfiI	GAWTC	4 cut(s)	260, 298, 604, 749
Tru1I	TTAA	3 cut(s)	51, 144, 456
Tru9I	TTAA	3 cut(s)	51, 144, 456
TscAI	CASTG	1 cut(s)	834
TseI	GCWGC	3 cut(s)	56, 251, 383
TspDTI	ATGAA	6 cut(s)	439, 474, 578, 641, 660, 704
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	1 cut(s)	834
Tth111I	GACNNNGTC	1 cut(s)	887
Van91I	CCANNNNNTGG	2 cut(s)	647, 886
VpaK11BI	GGWCC	2 cut(s)	846, 889
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	3 cut(s)	45, 396, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.