Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009557

Physical Location & Seq

Genomic Coordinates Forward (+)

29208230 .. 29211638

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37150.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCCTGCACAAGTTGACTCTGTTCCGCATCGGGGATTTGTGTCTGGCTTTAATGCTGCAGATTATCAGTCCAGGAGTTACTCTTCTAATTCTGGGCCAGATAACAGTAGTCAACGAATGGCTATGGAAGAAGAGGTGGTATTTAAGTTGTTATGCCACCATGATAAGGTTGGTAGTCTGATAGGGAAAGGTGGCTCCATTGTACGAACTTTTCAAAGTGAAACAGGTGCATCTATCAAGATTGTTGATGCTGCACCCGATTCGGATGAGCGCGTTGTTGTCATATCTGCACAAGAGAGTCCGGAGCTAAATTATTCCCCTGTACAAGAAGCTGTTATGCGTGTGCATCACCGAATTGCGGAGATTGGATTCGAACCTGGTGCTGCAGTGGTGGCTAGGCTTCTTCTACATCCACAGCAGATAGGTTGTTTATTGGGTAAAGGAGGTTTCATCATTAATGAAATGAGGCGAGCTACTGGTGCTAGTATTAGAATTTTTCCAAAAGAACAAAATCAGAAATCTGCTTACCATCATGATGACGTTGTACAGGTTATTGGAAGCTTGCACTCTGTACAGGATGCACTCTTTCATATAACAAGTAGGATTCGTGAAGCCATATTCCCAATGAAACAGTCATATCCAAATTTTGGTGTCCCACCGCACATGTCTTCATTTCCTGAGATGCCTCCCCCCTCCTTTAGACCGAGGCATAATCCAACCTCCCCTGGTGCGTATCCTTCATCTGTTGGATTCCATCCTGGAATGGATCGTTCTGCTTTTCGATCCCAACCTCCAGACCACCAGTCCCCATTTTCACACGGGGAACACGGTGGTCTATCTCACATGGACCGAGTTCCGTATTCTTATGGTGGTGAGCGTCCAGGACATGGTCCGGCATTTGAGAGATCTTCTCCAAGAGCATGGACTCCCCAGGGAGTAAGCTCCGGAAACCTAAGGGAAACTGGTGATGCTAATATGGGCTTGGCTCCAAGGAGTGGGTCTATACGAAGTGGCAGTCAACCACCTCAGTTAACCAGCACAACCATTGAGATCATGATTCCTCAAGCATTCATGAGTCATGTTTATGGAGAGAACAACAGTACTCTGAATCAGATTTGGCAGGTATCAGGTGCAAATTTAGTTGTTCATGATTCAAAACCAGGATCGTTGGAAACCCAAGTTGTAGTATCCGGAGCCCCAGATAAAATACATGTTGCCCAGAGCCTTATTCACGGTTTCATCCTTTGTGGGCAGACACAACTCACACAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

425

Amino Acids

45.98

Weight (kDa)

6.74

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	99 - 164	2.2e-11	KH domain
KH_1	PF00013	241 - 291	3.8e-13	KH domain
KH_1	PF00013	326 - 392	2e-11	KH domain
KH_1	PF00013	541 - 604	2.1e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51580
fragaria_vesca	FvH4_6g37150 FvH4_6g37150 FvH4_6g37150
malus_domestica	MD09G1161100.v1.1 MD17G1146900.v1.1
prunus_persica	Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1
pyrus_communis	pycom09g07950 pycom17g13960
rosa_chinensis	RchiOBHm_Chr2g0149721
rosa_laevigata	RLG00000020442
rosa_multiflora	Rmu_sc0001091.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097760
rosa_rugosa	Rorug02G0415600 Rorug02G0415700 Rorug02G0415800
rosa_samantha	Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000
rosa_wichuraiana	Rw2G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1111
AccB7I	CCANNNNNTGG	3 cut(s)	647, 887, 995
AccII	CGCG	1 cut(s)	273
AccIII	TCCGGA	3 cut(s)	301, 944, 1190
AciI	CCGC	3 cut(s)	26, 359, 659
AclWI	GGATC	3 cut(s)	774, 777, 1171
AcsI	RAATTY	3 cut(s)	492, 643, 1135
AfaI	GTAC	5 cut(s)	204, 324, 546, 573, 1102
AfiI	CCNNNNNNNGG	6 cut(s)	32, 166, 358, 647, 887, 995
AflIII	ACRYGT	2 cut(s)	663, 1210
AgsI	TTSAA	2 cut(s)	215, 1155
AhdI	GACNNNNNGTC	1 cut(s)	802
AjnI	CCWGG	7 cut(s)	71, 376, 724, 757, 880, 930, 1159
AluBI	AGCT	5 cut(s)	307, 332, 473, 561, 942
AluI	AGCT	5 cut(s)	307, 332, 473, 561, 942
AlwI	GGATC	3 cut(s)	774, 777, 1171
Aor13HI	TCCGGA	3 cut(s)	301, 944, 1190
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	56, 251, 383
ApoI	RAATTY	3 cut(s)	492, 643, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	1000, 1032
AseI	ATTAAT	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	95, 847, 890
AsuHPI	GGTGA	3 cut(s)	341, 884, 977
AsuII	TTCGAA	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	847, 890
AxyI	CCTNAGG	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	1198
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	43, 238, 370
BccI	CCATC	2 cut(s)	537, 762
BcgI	CGANNNNNNTGC	4 cut(s)	243, 277, 362, 396
BciT130I	CCWGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
BciVI	GTATCC	2 cut(s)	744, 1198
BfaI	CTAG	2 cut(s)	396, 483
BfmI	CTRYAG	2 cut(s)	57, 384
BfuAI	ACCTGC	1 cut(s)	1111
BfuI	GTATCC	2 cut(s)	744, 1198
BglII	AGATCT	1 cut(s)	905
BisI	GCNGC	3 cut(s)	57, 252, 384
BlsI	GCNGC	3 cut(s)	58, 253, 385
BmcAI	AGTACT	1 cut(s)	1102
Bme1390I	CCNGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
Bme18I	GGWCC	2 cut(s)	847, 890
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmgT120I	GGNCC	3 cut(s)	95, 847, 890
BmiI	GGNNCC	3 cut(s)	196, 987, 1195
BmrFI	CCNGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
BmsI	GCATC	7 cut(s)	37, 238, 239, 355, 568, 672, 958
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	895, 927
BpmI	CTGGAG	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	1047
BsaJI	CCNNGG	5 cut(s)	704, 724, 930, 931, 989
BsaWI	WCCGGW	3 cut(s)	301, 944, 1190
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 166, 358, 647, 887, 995
Bse1I	ACTGG	3 cut(s)	481, 802, 967
Bse21I	CCTNAGG	1 cut(s)	953
BseAI	TCCGGA	3 cut(s)	301, 944, 1190
BseBI	CCWGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
BseDI	CCNNGG	5 cut(s)	704, 724, 930, 931, 989
BseGI	GGATG	5 cut(s)	271, 409, 583, 754, 1239
BseLI	CCNNNNNNNGG	6 cut(s)	32, 166, 358, 647, 887, 995
BseMII	CTCAG	2 cut(s)	669, 1040
BseNI	ACTGG	3 cut(s)	481, 802, 967
BseXI	GCAGC	3 cut(s)	43, 238, 370
BsgI	GTGCAG	2 cut(s)	237, 273
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	97
BsiSI	CCGG	4 cut(s)	302, 893, 945, 1191
BslFI	GGGAC	2 cut(s)	638, 790
BslI	CCNNNNNNNGG	6 cut(s)	32, 166, 358, 647, 887, 995
BsmFI	GGGAC	2 cut(s)	638, 790
BsmI	GAATGC	1 cut(s)	1067
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	1198
Bsp13I	TCCGGA	3 cut(s)	301, 944, 1190
Bsp1407I	TGTACA	3 cut(s)	322, 544, 571
Bsp143I	GATC	5 cut(s)	766, 782, 905, 1050, 1163
BspACI	CCGC	3 cut(s)	26, 359, 659
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	670, 1039
BspEI	TCCGGA	3 cut(s)	301, 944, 1190
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	4 cut(s)	532, 1053, 1071, 1147
BspLI	GGNNCC	3 cut(s)	196, 987, 1195
BspMAI	CTGCAG	2 cut(s)	61, 388
BspMI	ACCTGC	1 cut(s)	1111
BspPI	GGATC	3 cut(s)	774, 777, 1171
BspT104I	TTCGAA	1 cut(s)	372
BsrGI	TGTACA	3 cut(s)	322, 544, 571
BsrI	ACTGG	3 cut(s)	481, 802, 967
BssECI	CCNNGG	5 cut(s)	704, 724, 930, 931, 989
BssMI	GATC	5 cut(s)	766, 782, 905, 1050, 1163
BssT1I	CCWWGG	1 cut(s)	989
Bst2UI	CCWGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
Bst4CI	ACNGT	5 cut(s)	107, 633, 830, 1100, 1235
Bst6I	CTCTTC	2 cut(s)	88, 126
BstAUI	TGTACA	3 cut(s)	322, 544, 571
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	6, 471, 563
BstDEI	CTNAG	3 cut(s)	678, 953, 1026
BstF5I	GGATG	5 cut(s)	271, 409, 583, 754, 1239
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	769, 785, 908, 1053, 1166
BstMBI	GATC	5 cut(s)	766, 782, 905, 1050, 1163
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 479
BstNI	CCWGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
BstNSI	RCATGY	2 cut(s)	667, 1214
BstSCI	CCNGG	7 cut(s)	71, 376, 724, 757, 880, 930, 1159
BstSFI	CTRYAG	2 cut(s)	57, 384
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	43, 238, 370
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	905
BstXI	CCANNNNNNTGG	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	905
Bsu36I	CCTNAGG	1 cut(s)	953
BsuI	GTATCC	2 cut(s)	744, 1198
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	271, 409, 583, 754, 1239
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	1111
Cac8I	GCNNGC	3 cut(s)	6, 471, 563
CciI	TCATGA	4 cut(s)	532, 1053, 1071, 1147
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	95, 847, 890
CseI	GACGC	1 cut(s)	866
CsiI	ACCWGGT	1 cut(s)	376
Csp6I	GTAC	5 cut(s)	203, 323, 545, 572, 1101
CviQI	GTAC	5 cut(s)	203, 323, 545, 572, 1101
DdeI	CTNAG	3 cut(s)	678, 953, 1026
DpnI	GATC	5 cut(s)	768, 784, 907, 1052, 1165
DpnII	GATC	5 cut(s)	766, 782, 905, 1050, 1163
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	2 cut(s)	88, 126
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	2 cut(s)	88, 126
Eco130I	CCWWGG	1 cut(s)	989
Eco24I	GRGCYC	1 cut(s)	1198
Eco47I	GGWCC	2 cut(s)	847, 890
Eco81I	CCTNAGG	1 cut(s)	953
EcoRII	CCWGG	7 cut(s)	71, 376, 724, 757, 880, 930, 1159
EcoT14I	CCWWGG	1 cut(s)	989
EcoT38I	GRGCYC	1 cut(s)	1198
ErhI	CCWWGG	1 cut(s)	989
FaqI	GGGAC	2 cut(s)	638, 790
Fnu4HI	GCNGC	3 cut(s)	57, 252, 384
FokI	GGATG	5 cut(s)	278, 396, 590, 741, 1226
FriOI	GRGCYC	1 cut(s)	1198
Fsp4HI	GCNGC	3 cut(s)	57, 252, 384
FspBI	CTAG	2 cut(s)	396, 483
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	57, 252, 384
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	4 cut(s)	302, 893, 945, 1191
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	4 cut(s)	16, 113, 1019, 1032
HindII	GTYRAC	4 cut(s)	16, 113, 1019, 1032
HindIII	AAGCTT	1 cut(s)	559
HpaI	GTTAAC	1 cut(s)	1032
HpaII	CCGG	4 cut(s)	302, 893, 945, 1191
HphI	GGTGA	3 cut(s)	341, 884, 977
Hpy166II	GTNNAC	4 cut(s)	16, 113, 1019, 1032
Hpy188I	TCNGA	5 cut(s)	180, 265, 516, 1107, 1113
Hpy8I	GTNNAC	4 cut(s)	16, 113, 1019, 1032
HpyAV	CCTTC	1 cut(s)	747
HpyCH4III	ACNGT	5 cut(s)	107, 633, 830, 1100, 1235
HpyCH4IV	ACGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 479
HpyF3I	CTNAG	3 cut(s)	678, 953, 1026
HpySE526I	ACGT	1 cut(s)	540
HspAI	GCGC	1 cut(s)	271
Kpn2I	TCCGGA	3 cut(s)	301, 944, 1190
KspAI	GTTAAC	1 cut(s)	1032
Kzo9I	GATC	5 cut(s)	766, 782, 905, 1050, 1163
LmnI	GCTCC	5 cut(s)	200, 304, 947, 991, 1193
Lsp1109I	GCAGC	3 cut(s)	43, 238, 370
LweI	GCATC	7 cut(s)	37, 238, 239, 355, 568, 672, 958
MabI	ACCWGGT	1 cut(s)	376
MaeI	CTAG	2 cut(s)	396, 483
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	5 cut(s)	768, 784, 907, 1052, 1165
MboI	GATC	5 cut(s)	766, 782, 905, 1050, 1163
MboII	GAAGA	6 cut(s)	75, 140, 143, 395, 660, 900
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	1 cut(s)	1198
MluCI	AATT	6 cut(s)	88, 310, 354, 492, 643, 1135
MlyI	GAGTC	4 cut(s)	11, 307, 919, 1084
MmeI	TCCRAC	3 cut(s)	727, 740, 1149
MroI	TCCGGA	3 cut(s)	301, 944, 1190
MseI	TTAA	4 cut(s)	51, 144, 456, 1031
MslI	CAYNNNNRTG	2 cut(s)	534, 1083
MspI	CCGG	4 cut(s)	302, 893, 945, 1191
MspR9I	CCNGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
Mva1269I	GAATGC	1 cut(s)	1067
MvaI	CCWGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	392, 479
NdeII	GATC	5 cut(s)	766, 782, 905, 1050, 1163
NlaIV	GGNNCC	3 cut(s)	196, 987, 1195
NspI	RCATGY	2 cut(s)	667, 1214
NspV	TTCGAA	1 cut(s)	372
PagI	TCATGA	4 cut(s)	532, 1053, 1071, 1147
PasI	CCCWGGG	1 cut(s)	931
PciI	ACATGT	2 cut(s)	663, 1210
PctI	GAATGC	1 cut(s)	1067
PfeI	GAWTC	7 cut(s)	260, 369, 604, 750, 1057, 1108, 1151
PflFI	GACNNNGTC	1 cut(s)	888
PflMI	CCANNNNNTGG	3 cut(s)	647, 887, 995
PfoI	TCCNGGA	3 cut(s)	71, 757, 880
PkrI	GCNGC	3 cut(s)	58, 253, 385
PleI	GAGTC	4 cut(s)	11, 306, 919, 1083
PpsI	GAGTC	4 cut(s)	11, 306, 919, 1083
PscI	ACATGT	2 cut(s)	663, 1210
PshBI	ATTAAT	1 cut(s)	456
Psp6I	CCWGG	7 cut(s)	71, 376, 724, 757, 880, 930, 1159
PspGI	CCWGG	7 cut(s)	71, 376, 724, 757, 880, 930, 1159
PspN4I	GGNNCC	3 cut(s)	196, 987, 1195
PspPI	GGNCC	3 cut(s)	95, 847, 890
PstI	CTGCAG	2 cut(s)	61, 388
PsuI	RGATCY	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	888
RsaI	GTAC	5 cut(s)	204, 324, 546, 573, 1102
RsaNI	GTAC	5 cut(s)	203, 323, 545, 572, 1101
RseI	CAYNNNNRTG	2 cut(s)	534, 1083
SaqAI	TTAA	4 cut(s)	51, 144, 456, 1031
SatI	GCNGC	3 cut(s)	57, 252, 384
Sau3AI	GATC	5 cut(s)	766, 782, 905, 1050, 1163
Sau96I	GGNCC	3 cut(s)	95, 847, 890
ScaI	AGTACT	1 cut(s)	1102
SchI	GAGTC	4 cut(s)	11, 307, 919, 1084
ScrFI	CCNGG	7 cut(s)	73, 378, 726, 759, 882, 932, 1161
SduI	GDGCHC	1 cut(s)	1198
SexAI	ACCWGGT	1 cut(s)	376
SfaNI	GCATC	7 cut(s)	37, 238, 239, 355, 568, 672, 958
SfcI	CTRYAG	2 cut(s)	57, 384
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	2 cut(s)	847, 890
SmiMI	CAYNNNNRTG	2 cut(s)	534, 1083
SmlI	CTYRAG	1 cut(s)	1062
SmoI	CTYRAG	1 cut(s)	1062
Sse9I	AATT	6 cut(s)	88, 310, 354, 492, 643, 1135
SsiI	CCGC	3 cut(s)	26, 359, 659
SspMI	CTAG	2 cut(s)	396, 483
StyD4I	CCNGG	7 cut(s)	71, 376, 724, 757, 880, 930, 1159
StyI	CCWWGG	1 cut(s)	989
TaaI	ACNGT	5 cut(s)	107, 633, 830, 1100, 1235
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	2 cut(s)	372, 781
TaqII	GACCGA	2 cut(s)	718, 864
TasI	AATT	6 cut(s)	88, 310, 354, 492, 643, 1135
TatI	WGTACW	4 cut(s)	322, 544, 571, 1100
TfiI	GAWTC	7 cut(s)	260, 369, 604, 750, 1057, 1108, 1151
Tru1I	TTAA	4 cut(s)	51, 144, 456, 1031
Tru9I	TTAA	4 cut(s)	51, 144, 456, 1031
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	3 cut(s)	56, 251, 383
TspDTI	ATGAA	9 cut(s)	439, 474, 578, 641, 660, 729, 1060, 1136, 1228
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	1 cut(s)	393
Tth111I	GACNNNGTC	1 cut(s)	888
Van91I	CCANNNNNTGG	3 cut(s)	647, 887, 995
VpaK11BI	GGWCC	2 cut(s)	847, 890
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	3 cut(s)	492, 643, 1135
XceI	RCATGY	2 cut(s)	667, 1214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	2 cut(s)	396, 483
ZrmI	AGTACT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.