Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009557

Physical Location & Seq

Genomic Coordinates Reverse (-)

12986150 .. 12990839

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1161100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGGAAGCCGCCGCCCTCTTCCGCCTGCTCTGCCCATCCTCCAAAACCGCCGCCCTCATCCCCAAACTGGGCTCCACCCCTGGCGCCAAGGTCCGGATCGAACACCCAACCCATGGCGGCGACGAGTGCGTCGTCCTCATCTTCGCCGAACCAAATGCCCAATCGCCCAATAACGCCGCCCAAACCCTAGACAAGGCAGAAAGGTCGCCTGCCCAGCAAGCCCTGGTTAGGGTGTTCGGGAAGGTAACGGTTGACGACGCCGGTGAAGCAGAAAAGGGTAATAGCGGCGGCTGCGGCGGCTTGGTGTGTTGTAGGTTGCTGGTGGCAAGCAGCCAGGTTGGGTGTGTGCTTGGGAGAGGGGGCAAGATTGTGGAGAAGATTAGGCAGGAGAGTGGAGCCCACGTTAGGGTTTTGCCCAGAGACCAGATTCCGCCGTGTGCATCCCCTGCAGATGAGTTGATTCAGATAACAGGAGACTTTTCAGCAGTGAAGAAAGCACTTCTGTCTGTTTCAGGTTGTCTTCAGGATAACCCTAAGGAAGATGTAGCTAACTCTGGTGCTACCAAAATTTCAGGGGGATCGATTCACGGAACTGGTATGCCTGCACAAGTTGACCCTATTGCTCATCGGGGCTTTGGGCCTGGCTTTAATGCGTCAGATTATCACTCAAGGAATTATTCTTCTAATCCCGGGACTGAAAATATTGGACGTGGTCACAGGATGGCTATGGAAGAAGAGGTGGTATTCAAGTTGCTATGTCATGTTGATAAGGTTGGCAGTCTGATAGGGAAGGGTGGCTCCATTGTTCGGACTATGCAAAGTGAAACTGGTGCATCAATTAAGATTGCTGATTGTGCACCTGATTCAGATGAGCGGGTTGTTATCATATCTGCACAAGAGAATCCAGAGCAAAAATATTCCCCGGCACAGGAAGCTGTTATTCGTGCACATCATCGAATTGCAGAGATTGGGTTTGAACCTGGTGCTGCAGTGGTTGCTAGGCTTCTTGTACATCCACAACAGATAGGTTGTTTATTGGGTAAAGGAGGTTTCATTATTACAGAAATGAGAAGAGCTACTGGTGCTAGTATACGAATTTTTCCAAAGGAACAAGTCCAGAAGGGTAGCTACCAAAATGATGAAGTTGTACAGGTTATTGGAAGCTTGCCTTCTGTACAGGATGCACTCTTTCATATAACAAGTAGGATTCGGGAAACAATTTTCCCTATGAGACCCCCTTATGCTAATTTCAGTGGCCCGCCCTATATGTCTCCATTTCCCGAGATGCCTCCCCCCTCCTTTAGACCGAGGCATAACCCAGCCTCCCCTGGTCCCTATCCTTCACCTGGATTCCATCATGGAATTGATCATTCTGCTTTTCCATCACAAACTCCTGATCATCAGCCTTCATTTTCTCATGGTATGGATCACAACGGTCCAGCCCACATGGACCGAGTTCCCTATTCTTTTGGTAATGAGCGACCAGGACATGGTCCAACATTTGAGAGTCCTTCTCCAAGGGCTTGGACTCCCCAGGGAGTAAGCTGTGGGACCCCTAGAGGAGCTGCTGATGTTGGTTCAGGCTTGGCTTCAAGAAATGGGTCTCGACGAAGTGGAAGTCAACAACCTTACTTAACCAGCACAACAGTGGAGATCACGATTCCTCAGACGTTGATAACTCACGTTCATGGAGAGAACAACGGTAATCTGAGCCAGATCCGGCAGATCTCAGGCGCACATGTGATTGTTCACGATTCAAAACCTGGATCGTTGGAAACCCTGGTTGTCGTGTCCGGACCTCCAGATAAAACGCGTGCTGCTCAGACCCTTATTCATGGTTTCATCCTTTGTGGCCAGACACAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

623

Amino Acids

66.02

Weight (kDa)

7.67

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	104 - 167	4.7e-14	KH domain
KH_1	PF00013	249 - 300	4e-12	KH domain
KH_1	PF00013	333 - 400	3.5e-11	KH domain
KH_1	PF00013	549 - 612	7.7e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51580
fragaria_vesca	FvH4_6g37150 FvH4_6g37150 FvH4_6g37150
malus_domestica	MD09G1161100.v1.1 MD17G1146900.v1.1
prunus_persica	Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1
pyrus_communis	pycom09g07950 pycom17g13960
rosa_chinensis	RchiOBHm_Chr2g0149721
rosa_laevigata	RLG00000020442
rosa_multiflora	Rmu_sc0001091.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097760
rosa_rugosa	Rorug02G0415600 Rorug02G0415700 Rorug02G0415800
rosa_samantha	Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000
rosa_wichuraiana	Rw2G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	2 cut(s)	113, 1490
AccBSI	CCGCTC	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	1090
AccII	CGCG	1 cut(s)	1813
AccIII	TCCGGA	2 cut(s)	93, 1793
AclWI	GGATC	5 cut(s)	104, 586, 1434, 1711, 1774
AcoI	YGGCCR	1 cut(s)	1852
AcsI	RAATTY	2 cut(s)	567, 1095
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	2 cut(s)	84, 258
AfaI	GTAC	3 cut(s)	1011, 1149, 1176
AflIII	ACRYGT	2 cut(s)	1738, 1811
AgsI	TTSAA	4 cut(s)	748, 977, 1593, 1758
AjiI	CACGTC	1 cut(s)	710
AleI	CACNNNNGTG	1 cut(s)	1646
AluBI	AGCT	7 cut(s)	548, 935, 1076, 1128, 1164, 1545, 1565
AluI	AGCT	7 cut(s)	548, 935, 1076, 1128, 1164, 1545, 1565
Alw21I	GWGCWC	2 cut(s)	859, 949
Alw26I	GTCTC	5 cut(s)	414, 468, 1225, 1275, 1608
Alw44I	GTGCAC	2 cut(s)	855, 945
AlwI	GGATC	5 cut(s)	104, 586, 1434, 1711, 1774
Ama87I	CYCGRG	2 cut(s)	689, 1280
Aor13HI	TCCGGA	2 cut(s)	93, 1793
AoxI	GGCC	3 cut(s)	638, 1255, 1852
ApaLI	GTGCAC	2 cut(s)	855, 945
ApeKI	GCWGC	5 cut(s)	291, 330, 986, 1565, 1817
ApoI	RAATTY	2 cut(s)	567, 1095
ArsI	GACNNNNNNTTYG	2 cut(s)	1603, 1635
AspLEI	GCGC	2 cut(s)	86, 1736
AspS9I	GGNCC	9 cut(s)	91, 638, 1256, 1331, 1436, 1450, 1493, 1551, 1796
AsuC2I	CCSGG	3 cut(s)	690, 691, 923
AsuHPI	GGTGA	2 cut(s)	275, 1335
AvaI	CYCGRG	2 cut(s)	689, 1280
AvaII	GGWCC	7 cut(s)	91, 1331, 1436, 1450, 1493, 1551, 1796
AxyI	CCTNAGG	1 cut(s)	534
BaeGI	GKGCMC	2 cut(s)	859, 949
BalI	TGGCCA	1 cut(s)	1854
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	74, 400
BarI	GAAGNNNNNNTAC	2 cut(s)	1112, 1144
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	2 cut(s)	859, 949
BbvI	GCAGC	5 cut(s)	278, 342, 973, 1552, 1804
BccI	CCATC	4 cut(s)	43, 715, 1362, 1390
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	4 cut(s)	137, 171, 186, 220
BclI	TGATCA	2 cut(s)	1366, 1396
BcnI	CCSGG	3 cut(s)	690, 691, 923
BcoDI	GTCTC	5 cut(s)	414, 468, 1225, 1275, 1608
BfaI	CTAG	4 cut(s)	188, 999, 1086, 1557
BfmI	CTRYAG	2 cut(s)	447, 987
BfoI	RGCGCY	1 cut(s)	87
BglII	AGATCT	1 cut(s)	1725
Bme18I	GGWCC	7 cut(s)	91, 1331, 1436, 1450, 1493, 1551, 1796
BmeT110I	CYCGRG	2 cut(s)	689, 1280
BmgBI	CACGTC	1 cut(s)	710
BmgT120I	GGNCC	9 cut(s)	91, 638, 1256, 1331, 1436, 1450, 1493, 1551, 1796
BmiI	GGNNCC	7 cut(s)	73, 85, 397, 799, 1333, 1552, 1553
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	4 cut(s)	449, 842, 1171, 1275
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	1498, 1530
BpmI	CTGGAG	1 cut(s)	1785
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	3 cut(s)	690, 691, 923
Bsa29I	ATCGAT	1 cut(s)	581
BsaHI	GRCGYC	2 cut(s)	84, 258
BsaI	GGTCTC	3 cut(s)	414, 1225, 1608
BsaWI	WCCGGW	2 cut(s)	93, 1793
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 1307, 1337
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	4 cut(s)	72, 598, 832, 1084
Bse21I	CCTNAGG	1 cut(s)	534
BseAI	TCCGGA	2 cut(s)	93, 1793
BseCI	ATCGAT	1 cut(s)	581
BseGI	GGATG	7 cut(s)	35, 57, 440, 726, 1012, 1186, 1842
BseMII	CTCAG	4 cut(s)	1679, 1700, 1743, 1835
BseNI	ACTGG	4 cut(s)	72, 598, 832, 1084
BseRI	GAGGAG	1 cut(s)	1575
BseSI	GKGCMC	2 cut(s)	859, 949
BseXI	GCAGC	5 cut(s)	278, 342, 973, 1552, 1804
BseYI	CCCAGC	2 cut(s)	213, 1318
BsgI	GTGCAG	2 cut(s)	588, 876
Bsh1236I	CGCG	1 cut(s)	1813
BshFI	GGCC	3 cut(s)	640, 1257, 1854
BshNI	GGYRCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	859, 949
BsiHKCI	CYCGRG	2 cut(s)	689, 1280
BsiSI	CCGG	6 cut(s)	94, 261, 690, 923, 1720, 1794
BslFI	GGGAC	3 cut(s)	706, 1317, 1564
BsmAI	GTCTC	5 cut(s)	414, 468, 1225, 1275, 1608
BsmFI	GGGAC	3 cut(s)	706, 1317, 1564
BsnI	GGCC	3 cut(s)	640, 1257, 1854
Bso31I	GGTCTC	3 cut(s)	414, 1225, 1608
BsoBI	CYCGRG	2 cut(s)	689, 1280
Bsp1286I	GDGCHC	4 cut(s)	74, 400, 859, 949
Bsp13I	TCCGGA	2 cut(s)	93, 1793
Bsp1407I	TGTACA	3 cut(s)	1009, 1147, 1174
Bsp143I	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	3 cut(s)	640, 1257, 1854
BspCNI	CTCAG	4 cut(s)	1678, 1701, 1742, 1834
BspDI	ATCGAT	1 cut(s)	581
BspEI	TCCGGA	2 cut(s)	93, 1793
BspFNI	CGCG	1 cut(s)	1813
BspLI	GGNNCC	7 cut(s)	73, 85, 397, 799, 1333, 1552, 1553
BspMAI	CTGCAG	2 cut(s)	451, 991
BspPI	GGATC	5 cut(s)	104, 586, 1434, 1711, 1774
BspQI	GCTCTTC	1 cut(s)	1066
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	3 cut(s)	414, 1225, 1608
BsrBI	CCGCTC	1 cut(s)	874
BsrFI	RCCGGY	1 cut(s)	260
BsrGI	TGTACA	3 cut(s)	1009, 1147, 1174
BsrI	ACTGG	4 cut(s)	72, 598, 832, 1084
BssAI	RCCGGY	1 cut(s)	260
BssMI	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
BssNAI	GTATAC	1 cut(s)	1091
BssNI	GRCGYC	2 cut(s)	84, 258
BssT1I	CCWWGG	3 cut(s)	87, 112, 1517
Bst1107I	GTATAC	1 cut(s)	1091
Bst4CI	ACNGT	4 cut(s)	250, 1436, 1648, 1703
Bst6I	CTCTTC	3 cut(s)	23, 729, 1066
BstACI	GRCGYC	2 cut(s)	84, 258
BstAPI	GCANNNNNTGC	2 cut(s)	446, 995
BstAUI	TGTACA	3 cut(s)	1009, 1147, 1174
BstC8I	GCNNGC	8 cut(s)	26, 210, 219, 328, 603, 1166, 1259, 1815
BstDEI	CTNAG	5 cut(s)	534, 1665, 1709, 1729, 1821
BstDSI	CCRYGG	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	7 cut(s)	35, 57, 440, 726, 1012, 1186, 1842
BstFNI	CGCG	1 cut(s)	1813
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 1736
BstKTI	GATC	9 cut(s)	99, 581, 1369, 1399, 1429, 1656, 1719, 1728, 1769
BstMAI	GTCTC	5 cut(s)	414, 468, 1225, 1275, 1608
BstMBI	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
BstNSI	RCATGY	1 cut(s)	1742
BstSFI	CTRYAG	2 cut(s)	447, 987
BstSLI	GKGCMC	2 cut(s)	859, 949
BstUI	CGCG	1 cut(s)	1813
BstV1I	GCAGC	5 cut(s)	278, 342, 973, 1552, 1804
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	1716, 1725
BstXI	CCANNNNNNTGG	1 cut(s)	1524
BstYI	RGATCY	2 cut(s)	1716, 1725
BstZ17I	GTATAC	1 cut(s)	1091
Bsu15I	ATCGAT	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	640, 1257, 1854
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	710
BtsCI	GGATG	7 cut(s)	35, 57, 440, 726, 1012, 1186, 1842
BtsI	GCAGTG	2 cut(s)	492, 996
BtsIMutI	CAGTG	4 cut(s)	492, 996, 1258, 1653
Cac8I	GCNNGC	8 cut(s)	26, 210, 219, 328, 603, 1166, 1259, 1815
CfoI	GCGC	2 cut(s)	86, 1736
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	9 cut(s)	91, 638, 1256, 1331, 1436, 1450, 1493, 1551, 1796
Cfr9I	CCCGGG	1 cut(s)	689
ClaI	ATCGAT	1 cut(s)	581
CseI	GACGC	3 cut(s)	118, 266, 642
CsiI	ACCWGGT	1 cut(s)	979
Csp6I	GTAC	3 cut(s)	1010, 1148, 1175
CviAII	CATG	9 cut(s)	113, 761, 1358, 1418, 1447, 1490, 1688, 1739, 1835
CviQI	GTAC	3 cut(s)	1010, 1148, 1175
DdeI	CTNAG	5 cut(s)	534, 1665, 1709, 1729, 1821
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	9 cut(s)	98, 580, 1368, 1398, 1428, 1655, 1718, 1727, 1768
DpnII	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	1852
Eam1104I	CTCTTC	3 cut(s)	23, 729, 1066
EarI	CTCTTC	3 cut(s)	23, 729, 1066
EciI	GGCGGA	2 cut(s)	11, 420
Eco130I	CCWWGG	3 cut(s)	87, 112, 1517
Eco24I	GRGCYC	2 cut(s)	74, 400
Eco31I	GGTCTC	3 cut(s)	414, 1225, 1608
Eco47I	GGWCC	7 cut(s)	91, 1331, 1436, 1450, 1493, 1551, 1796
Eco57I	CTGAAG	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	2 cut(s)	689, 1280
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	1551
EcoT14I	CCWWGG	3 cut(s)	87, 112, 1517
EcoT38I	GRGCYC	2 cut(s)	74, 400
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	3 cut(s)	87, 112, 1517
FaeI	CATG	9 cut(s)	116, 764, 1361, 1421, 1450, 1493, 1691, 1742, 1838
FalI	AAGNNNNNCTT	2 cut(s)	1153, 1185
FaqI	GGGAC	3 cut(s)	706, 1317, 1564
FatI	CATG	9 cut(s)	112, 760, 1357, 1417, 1446, 1489, 1687, 1738, 1834
FauI	CCCGC	2 cut(s)	867, 1266
FbaI	TGATCA	2 cut(s)	1366, 1396
FblI	GTMKAC	1 cut(s)	1090
FokI	GGATG	7 cut(s)	22, 44, 427, 733, 999, 1193, 1829
FriOI	GRGCYC	2 cut(s)	74, 400
FspBI	CTAG	4 cut(s)	188, 999, 1086, 1557
GlaI	GCGC	2 cut(s)	85, 1735
GsaI	CCCAGC	2 cut(s)	217, 1322
GsuI	CTGGAG	1 cut(s)	1785
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	640, 1257, 1854
HapII	CCGG	6 cut(s)	94, 261, 690, 923, 1720, 1794
HgaI	GACGC	3 cut(s)	118, 266, 642
HhaI	GCGC	2 cut(s)	86, 1736
Hin1I	GRCGYC	2 cut(s)	84, 258
Hin1II	CATG	9 cut(s)	116, 764, 1361, 1421, 1450, 1493, 1691, 1742, 1838
Hin6I	GCGC	2 cut(s)	84, 1734
HinP1I	GCGC	2 cut(s)	84, 1734
HincII	GTYRAC	3 cut(s)	253, 613, 1622
HindII	GTYRAC	3 cut(s)	253, 613, 1622
HindIII	AAGCTT	1 cut(s)	1162
HpaII	CCGG	6 cut(s)	94, 261, 690, 923, 1720, 1794
HphI	GGTGA	2 cut(s)	275, 1335
Hpy166II	GTNNAC	7 cut(s)	253, 613, 857, 947, 1091, 1622, 1750
Hpy188I	TCNGA	8 cut(s)	465, 658, 783, 810, 868, 1668, 1710, 1824
Hpy8I	GTNNAC	7 cut(s)	253, 613, 857, 947, 1091, 1622, 1750
Hpy99I	CGWCG	4 cut(s)	125, 134, 260, 1611
HpyAV	CCTTC	7 cut(s)	235, 784, 1114, 1179, 1350, 1416, 1521
HpyCH4III	ACNGT	4 cut(s)	250, 1436, 1648, 1703
HpyCH4IV	ACGT	4 cut(s)	402, 709, 1670, 1683
HpyF3I	CTNAG	5 cut(s)	534, 1665, 1709, 1729, 1821
HpySE526I	ACGT	4 cut(s)	402, 709, 1670, 1683
Hsp92I	GRCGYC	2 cut(s)	84, 258
Hsp92II	CATG	9 cut(s)	116, 764, 1361, 1421, 1450, 1493, 1691, 1742, 1838
HspAI	GCGC	2 cut(s)	84, 1734
KasI	GGCGCC	1 cut(s)	83
KflI	GGGWCCC	1 cut(s)	1551
Kpn2I	TCCGGA	2 cut(s)	93, 1793
Ksp22I	TGATCA	2 cut(s)	1366, 1396
Kzo9I	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
LguI	GCTCTTC	1 cut(s)	1066
LmnI	GCTCC	4 cut(s)	77, 395, 803, 1562
Lsp1109I	GCAGC	5 cut(s)	278, 342, 973, 1552, 1804
LweI	GCATC	4 cut(s)	449, 842, 1171, 1275
MabI	ACCWGGT	1 cut(s)	979
MaeI	CTAG	4 cut(s)	188, 999, 1086, 1557
MaeII	ACGT	4 cut(s)	402, 709, 1670, 1683
MaeIII	GTNAC	2 cut(s)	244, 713
MalI	GATC	9 cut(s)	98, 580, 1368, 1398, 1428, 1655, 1718, 1727, 1768
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
MflI	RGATCY	2 cut(s)	1716, 1725
MhlI	GDGCHC	4 cut(s)	74, 400, 859, 949
MlsI	TGGCCA	1 cut(s)	1854
MluCI	AATT	8 cut(s)	567, 673, 837, 957, 1095, 1218, 1246, 1362
MluI	ACGCGT	1 cut(s)	1811
MluNI	TGGCCA	1 cut(s)	1854
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	1516, 1522
MmeI	TCCRAC	2 cut(s)	1520, 1752
Mox20I	TGGCCA	1 cut(s)	1854
MroI	TCCGGA	2 cut(s)	93, 1793
MscI	TGGCCA	1 cut(s)	1854
MseI	TTAA	3 cut(s)	648, 840, 1634
MslI	CAYNNNNRTG	2 cut(s)	1646, 1686
Msp20I	TGGCCA	1 cut(s)	1854
MspI	CCGG	6 cut(s)	94, 261, 690, 923, 1720, 1794
MvnI	CGCG	1 cut(s)	1813
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	3 cut(s)	690, 691, 923
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
NlaIII	CATG	9 cut(s)	116, 764, 1361, 1421, 1450, 1493, 1691, 1742, 1838
NlaIV	GGNNCC	7 cut(s)	73, 85, 397, 799, 1333, 1552, 1553
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	1 cut(s)	1742
OliI	CACNNNNGTG	1 cut(s)	1646
PasI	CCCWGGG	1 cut(s)	1534
PciI	ACATGT	1 cut(s)	1738
PciSI	GCTCTTC	1 cut(s)	1066
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	9 cut(s)	427, 460, 583, 863, 901, 1207, 1350, 1660, 1754
PflFI	GACNNNGTC	2 cut(s)	711, 1491
PflMI	CCANNNNNTGG	2 cut(s)	113, 1490
PleI	GAGTC	2 cut(s)	1515, 1522
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	2 cut(s)	1515, 1522
PpuMI	RGGWCCY	1 cut(s)	1551
PscI	ACATGT	1 cut(s)	1738
Psp5II	RGGWCCY	1 cut(s)	1551
PspFI	CCCAGC	2 cut(s)	213, 1318
PspN4I	GGNNCC	7 cut(s)	73, 85, 397, 799, 1333, 1552, 1553
PspPI	GGNCC	9 cut(s)	91, 638, 1256, 1331, 1436, 1450, 1493, 1551, 1796
PspPPI	RGGWCCY	1 cut(s)	1551
PstI	CTGCAG	2 cut(s)	451, 991
PsuI	RGATCY	2 cut(s)	1716, 1725
PsyI	GACNNNGTC	2 cut(s)	711, 1491
RsaI	GTAC	3 cut(s)	1011, 1149, 1176
RsaNI	GTAC	3 cut(s)	1010, 1148, 1175
RseI	CAYNNNNRTG	2 cut(s)	1646, 1686
SapI	GCTCTTC	1 cut(s)	1066
SaqAI	TTAA	3 cut(s)	648, 840, 1634
Sau3AI	GATC	9 cut(s)	96, 578, 1366, 1396, 1426, 1653, 1716, 1725, 1766
Sau96I	GGNCC	9 cut(s)	91, 638, 1256, 1331, 1436, 1450, 1493, 1551, 1796
SchI	GAGTC	2 cut(s)	1516, 1522
SduI	GDGCHC	4 cut(s)	74, 400, 859, 949
SexAI	ACCWGGT	1 cut(s)	979
SfaNI	GCATC	4 cut(s)	449, 842, 1171, 1275
SfcI	CTRYAG	2 cut(s)	447, 987
SfoI	GGCGCC	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	260
SinI	GGWCC	7 cut(s)	91, 1331, 1436, 1450, 1493, 1551, 1796
SmaI	CCCGGG	1 cut(s)	691
SmiMI	CAYNNNNRTG	2 cut(s)	1646, 1686
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	8 cut(s)	567, 673, 837, 957, 1095, 1218, 1246, 1362
SspDI	GGCGCC	1 cut(s)	83
SspI	AATATT	2 cut(s)	703, 917
SspMI	CTAG	4 cut(s)	188, 999, 1086, 1557
StyI	CCWWGG	3 cut(s)	87, 112, 1517
TaaI	ACNGT	4 cut(s)	250, 1436, 1648, 1703
TaiI	ACGT	4 cut(s)	405, 712, 1673, 1686
TaqI	TCGA	4 cut(s)	99, 581, 955, 1606
TaqII	GACCGA	2 cut(s)	1321, 1467
TasI	AATT	8 cut(s)	567, 673, 837, 957, 1095, 1218, 1246, 1362
TatI	WGTACW	3 cut(s)	1009, 1147, 1174
TauI	GCSGC	9 cut(s)	11, 14, 53, 120, 179, 288, 291, 297, 300
TfiI	GAWTC	9 cut(s)	427, 460, 583, 863, 901, 1207, 1350, 1660, 1754
Tru1I	TTAA	3 cut(s)	648, 840, 1634
Tru9I	TTAA	3 cut(s)	648, 840, 1634
TscAI	CASTG	4 cut(s)	492, 996, 1258, 1653
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	5 cut(s)	291, 330, 986, 1565, 1817
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	7 cut(s)	1042, 1155, 1181, 1398, 1676, 1823, 1831
TspGWI	ACGGA	1 cut(s)	603
TspMI	CCCGGG	1 cut(s)	689
TspRI	CASTG	4 cut(s)	492, 996, 1258, 1653
Tth111I	GACNNNGTC	2 cut(s)	711, 1491
Van91I	CCANNNNNTGG	2 cut(s)	113, 1490
VneI	GTGCAC	2 cut(s)	855, 945
VpaK11BI	GGWCC	7 cut(s)	91, 1331, 1436, 1450, 1493, 1551, 1796
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	2 cut(s)	567, 1095
XceI	RCATGY	1 cut(s)	1742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1645
XmaI	CCCGGG	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	1090
XspI	CTAG	4 cut(s)	188, 999, 1086, 1557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.