Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009557

Physical Location & Seq

Genomic Coordinates Forward (+)

53201057 .. 53203715

Gene Structure 2659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAAGCCATGAAATTAAGGACCCAGAAGTTGGTTCTCCAAATGGAATACATAATATTCTTGCAGAGCGAAGAACTTTGACTCTCATTGACAGTTTGAAATACGTAAATATTGCAATGGTGACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTGGGAGAATTATTTATGTTTCTGATGATTATCCCTGCTATCAGCAGTGGCATTACAGATATCTCCTTTGACACTGTAGGCTATGCTTGGCAATTTTCAACTTGCATACTAACAGCAAGCTACTCAATTGATATTGGTGAAGGGAGTGGAGAATTCAAATGCCTGCCAGAGTGCCAGGTCCTGCACTGTATTTGTGAAGAGGATCATAGGCATCCCTGGACTCCCATCTTTGGTTCAGGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

4.92

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51580
fragaria_vesca	FvH4_6g37150 FvH4_6g37150 FvH4_6g37150
malus_domestica	MD09G1161100.v1.1 MD17G1146900.v1.1
prunus_persica	Prupe.3G020000_v2.0.a1 Prupe.3G020000_v2.0.a1
pyrus_communis	pycom09g07950 pycom17g13960
rosa_chinensis	RchiOBHm_Chr2g0149721
rosa_laevigata	RLG00000020442
rosa_multiflora	Rmu_sc0001091.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097760
rosa_rugosa	Rorug02G0415600 Rorug02G0415700 Rorug02G0415800
rosa_samantha	Rh2AG475400 Rh2BG486800 Rh2CG461000 Rh2DG496000
rosa_wichuraiana	Rw2G038740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AclWI	GGATC	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	59, 416
AgsI	TTSAA	4 cut(s)	16, 127, 285, 343
AjnI	CCWGG	2 cut(s)	360, 401
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
AlwI	GGATC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	49, 364
AsuHPI	GGTGA	2 cut(s)	160, 335
AvaII	GGWCC	2 cut(s)	49, 364
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	2 cut(s)	362, 403
BfmI	CTRYAG	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	362, 403
Bme18I	GGWCC	2 cut(s)	49, 364
BmgT120I	GGNCC	2 cut(s)	49, 364
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	362, 403
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 416
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	362, 403
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	59, 416
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	59, 416
Bsp143I	GATC	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	362, 403
Bst4CI	ACNGT	3 cut(s)	122, 262, 374
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	304, 350
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstNI	CCWGG	2 cut(s)	362, 403
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	360, 401
BstSFI	CTRYAG	1 cut(s)	261
BstSNI	TACGTA	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	4 cut(s)	185, 238, 258, 370
Cac8I	GCNNGC	2 cut(s)	304, 350
CaiI	CAGNNNCTG	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	49, 364
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	36, 267, 306, 428
CviKI_1	RGCY	4 cut(s)	36, 267, 306, 428
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	49, 364
Eco57I	CTGAAG	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	148
EcoO109I	RGGNCCY	2 cut(s)	49, 364
EcoO65I	GGTNACC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	360, 401
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	1 cut(s)	41
FaiI	YATR	6 cut(s)	39, 81, 203, 270, 293, 393
FatI	CATG	1 cut(s)	37
FokI	GGATG	1 cut(s)	384
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	2 cut(s)	109, 406
HphI	GGTGA	2 cut(s)	160, 335
Hpy188I	TCNGA	3 cut(s)	10, 159, 210
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	122, 262, 374
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	92, 143, 291, 370
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	388
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	148, 166
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	3 cut(s)	111, 172, 395
MfeI	CAATTG	1 cut(s)	312
MluCI	AATT	5 cut(s)	42, 194, 278, 312, 338
MlyI	GAGTC	2 cut(s)	103, 400
MnlI	CCTC	2 cut(s)	16, 379
MseI	TTAA	3 cut(s)	30, 45, 179
MspR9I	CCNGG	2 cut(s)	362, 403
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	2 cut(s)	362, 403
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	148, 166
PflMI	CCANNNNNTGG	1 cut(s)	59
PleI	GAGTC	2 cut(s)	103, 400
PpsI	GAGTC	2 cut(s)	103, 400
Ppu21I	YACGTR	1 cut(s)	133
PpuMI	RGGWCCY	2 cut(s)	49, 364
Psp5II	RGGWCCY	2 cut(s)	49, 364
Psp6I	CCWGG	2 cut(s)	360, 401
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	360, 401
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	49, 364
PspPPI	RGGWCCY	2 cut(s)	49, 364
PstNI	CAGNNNCTG	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	30, 45, 179
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	49, 364
SchI	GAGTC	2 cut(s)	103, 400
ScrFI	CCNGG	2 cut(s)	362, 403
SetI	ASST	3 cut(s)	135, 308, 366
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	49, 364
SnaBI	TACGTA	1 cut(s)	133
Sse9I	AATT	5 cut(s)	42, 194, 278, 312, 338
SspI	AATATT	3 cut(s)	85, 139, 175
StyD4I	CCNGG	2 cut(s)	360, 401
TaaI	ACNGT	3 cut(s)	122, 262, 374
TaiI	ACGT	1 cut(s)	135
TasI	AATT	5 cut(s)	42, 194, 278, 312, 338
Tru1I	TTAA	3 cut(s)	30, 45, 179
Tru9I	TTAA	3 cut(s)	30, 45, 179
TscAI	CASTG	4 cut(s)	192, 238, 265, 377
TseFI	GTSAC	2 cut(s)	148, 166
Tsp45I	GTSAC	2 cut(s)	148, 166
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	4 cut(s)	192, 238, 265, 377
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	49, 364
XapI	RAATTY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.