Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Reverse (-)

19614931 .. 19617611

Gene Structure 2681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAATTCCTGTAGCTTAGGAGCTCCTAAAGTTAGAATTTTTGCAACAAATTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCGAACAATCAAAGACTATTTGTTGACCAAAGCCCTATGAAGTATCTGAGTCTGAGAACGACTCTGCGATCTGTGAAAGCTATCCAATTGTCTACTGTCCCACCTGCAGAAACAGAAGCTATTGCAGACGTAAAAGATTCTGACGAGACCAAATCAACTGTTGTGAATACTCACCTCATGCCCAAGTCCTCCGAGGTGGAAGCACTCATCAGCGAAATCACCGATTCCTCATCCATTGCAGAGTTTGAACTCAAACTGGGAGGTTTCCGCCTGTATGTAGCAAGGAAATTAACTGACGAAAGTAGTCCACCACCTCAGCAAATTCAGCCTGTGGTTGCTGCAAGCGCAACTCCTGAGGGGGTTCACACTAATGGCTCAGCTACTTCTTCGTCATTGGCTATCACAAAAACATCATCTTCTTCGGCAGACAGACCACAAACACTCGCTAACAAAGCTGCTGATCAGGGTTTAGTGATTCTCCAATCTCCAACGGTCGGTTATTTCAGGAGATCCAAGACCATAAAAGGGAAACGCACTCCTACAATCTGTAAAGAGAAAGACATAGTGAAAGAAGGTCAAGTTCTATGCTACATTGAACAGCTCGGTGGCCAAATCCCAGTTGAGTCTGATGTTTCCGGAGAGATTGTCAAAATACTCCGCGAAGATGGCGAGCCTGTAGGATACAACGATGCTCTCATCACAGTACTTCCCTCATTTCCTGGCATCAAGAAGCTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

274

Amino Acids

29.57

Weight (kDa)

8.59

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	204 - 262	9.3e-08	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	2 cut(s)	352, 742
AclWI	GGATC	1 cut(s)	588
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	4 cut(s)	4, 36, 49, 405
AcuI	CTGAAG	1 cut(s)	803
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	2 cut(s)	578, 609
AgsI	TTSAA	2 cut(s)	332, 680
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	8 cut(s)	15, 23, 164, 203, 464, 539, 685, 817
AluI	AGCT	8 cut(s)	15, 23, 164, 203, 464, 539, 685, 817
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	588
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	1 cut(s)	691
ApeKI	GCWGC	2 cut(s)	422, 539
ApoI	RAATTY	4 cut(s)	4, 36, 49, 405
AspLEI	GCGC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	248, 295
AxyI	CCTNAGG	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	409, 526
BccI	CCATC	1 cut(s)	743
BciT130I	CCWGG	1 cut(s)	804
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	3 cut(s)	10, 189, 759
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	423, 540
BlpI	GCTNAGC	1 cut(s)	460
BlsI	GCNGC	2 cut(s)	424, 541
BmcAI	AGTACT	1 cut(s)	789
Bme1390I	CCNGG	1 cut(s)	804
BmrFI	CCNGG	1 cut(s)	804
BmrI	ACTGGG	2 cut(s)	350, 695
BmsI	GCATC	2 cut(s)	763, 816
BmuI	ACTGGG	2 cut(s)	350, 695
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu10I	CCTNAGC	2 cut(s)	16, 399
Bpu1102I	GCTNAGC	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	719
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 609
Bse1I	ACTGG	2 cut(s)	345, 701
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	578, 609
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	5 cut(s)	122, 128, 413, 429, 474
BseNI	ACTGG	2 cut(s)	345, 701
BseXI	GCAGC	2 cut(s)	409, 526
Bsh1236I	CGCG	1 cut(s)	744
Bsh1285I	CGRYCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	579
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	578, 609
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	693
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp13I	TCCGGA	1 cut(s)	719
Bsp143I	GATC	3 cut(s)	152, 544, 593
Bsp1720I	GCTNAGC	1 cut(s)	460
BspACI	CCGC	2 cut(s)	352, 742
BspANI	GGCC	1 cut(s)	693
BspCNI	CTCAG	5 cut(s)	123, 129, 412, 430, 473
BspEI	TCCGGA	1 cut(s)	719
BspFNI	CGCG	1 cut(s)	744
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	588
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	345, 701
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	152, 544, 593
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	4 cut(s)	181, 244, 577, 787
BstC8I	GCNNGC	2 cut(s)	427, 755
BstDEI	CTNAG	6 cut(s)	16, 131, 137, 399, 438, 460
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	3 cut(s)	155, 547, 596
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	3 cut(s)	152, 544, 593
BstMCI	CGRYCG	1 cut(s)	579
BstMWI	GCNNNNNNNGC	4 cut(s)	409, 428, 536, 750
BstNI	CCWGG	1 cut(s)	804
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	3 cut(s)	10, 189, 759
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	409, 526
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	427, 755
CfoI	GCGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	1 cut(s)	262
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	6 cut(s)	16, 131, 137, 399, 438, 460
DpnI	GATC	3 cut(s)	154, 546, 595
DpnII	GATC	3 cut(s)	152, 544, 593
EaeI	YGGCCR	1 cut(s)	691
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	803
Eco81I	CCTNAGG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	1 cut(s)	265
FaiI	YATR	6 cut(s)	122, 263, 360, 605, 647, 670
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	423, 540
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	423, 540
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	423, 540
HaeIII	GGCC	1 cut(s)	693
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	6 cut(s)	133, 145, 221, 308, 559, 707
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	2 cut(s)	248, 295
Hpy166II	GTNNAC	4 cut(s)	109, 177, 392, 448
Hpy188I	TCNGA	5 cut(s)	132, 138, 226, 277, 712
Hpy188III	TCNNGA	4 cut(s)	437, 589, 720, 811
Hpy8I	GTNNAC	4 cut(s)	109, 177, 392, 448
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	4 cut(s)	181, 244, 577, 787
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	44, 191, 209, 323, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	409, 428, 536, 750
HpyF3I	CTNAG	6 cut(s)	16, 131, 137, 399, 438, 460
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	429
Kpn2I	TCCGGA	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	152, 544, 593
LmnI	GCTCC	2 cut(s)	20, 28
Lsp1109I	GCAGC	2 cut(s)	409, 526
LweI	GCATC	2 cut(s)	763, 816
MaeII	ACGT	1 cut(s)	213
MalI	GATC	3 cut(s)	154, 546, 595
MboI	GATC	3 cut(s)	152, 544, 593
MboII	GAAGA	4 cut(s)	462, 492, 495, 758
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	693
MluCI	AATT	6 cut(s)	4, 36, 49, 170, 371, 405
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	3 cut(s)	139, 142, 716
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	8 cut(s)	269, 271, 283, 322, 338, 408, 433, 805
Mox20I	TGGCCA	1 cut(s)	693
MroI	TCCGGA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	693
MseI	TTAA	2 cut(s)	62, 374
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	693
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	1 cut(s)	804
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	804
MvnI	CGCG	1 cut(s)	744
MwoI	GCNNNNNNNGC	4 cut(s)	409, 428, 536, 750
NdeII	GATC	3 cut(s)	152, 544, 593
NlaIII	CATG	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	221, 308, 559
PkrI	GCNGC	2 cut(s)	424, 541
PleI	GAGTC	3 cut(s)	139, 141, 715
PpsI	GAGTC	3 cut(s)	139, 141, 715
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	802
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	62, 374
SatI	GCNGC	2 cut(s)	423, 540
Sau3AI	GATC	3 cut(s)	152, 544, 593
ScaI	AGTACT	1 cut(s)	789
SchI	GAGTC	3 cut(s)	139, 142, 716
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	763, 816
SfcI	CTRYAG	3 cut(s)	10, 189, 759
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	6 cut(s)	4, 36, 49, 170, 371, 405
SsiI	CCGC	2 cut(s)	352, 742
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	802
TaaI	ACNGT	4 cut(s)	181, 244, 577, 787
TaiI	ACGT	1 cut(s)	216
TasI	AATT	6 cut(s)	4, 36, 49, 170, 371, 405
TatI	WGTACW	1 cut(s)	787
TfiI	GAWTC	3 cut(s)	221, 308, 559
Tru1I	TTAA	2 cut(s)	62, 374
Tru9I	TTAA	2 cut(s)	62, 374
TseI	GCWGC	2 cut(s)	422, 539
TspDTI	ATGAA	2 cut(s)	17, 137
XapI	RAATTY	4 cut(s)	4, 36, 49, 405
XmiI	GTMKAC	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.