Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Forward (+)

41147875 .. 41148994

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0331800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCATCAACCAGTGCAAATGTATCTGTTTGGCCTTGATCCTCATGTTAGGGGCTTGGTCTTCTGAAGCCACTTCCCGCAGTCTCCAAGATGCAATGATGTATGGGAGATACGAGCAATGGATGGCTCGTTATGGACGTGTATATACTGACATTGCTGAGAAGGAGAAGCGCTTCCAAATATTCAAGGACAATGTAGCCTTTATAGAATCTTCCAACGACGAAGTACACAAACCTTACAAATTAAGTGTCAATAGATTTGCAGACCTTACAAATGAAGAGTTCACAGCCTCAAGAAATCGATTCAAGGGGCATGAATGTTCCACAAAGACCACTTCTTTCAAATATGAAAATGTTACCGTGCCAGCTACAATGGACTGGAGGCAGAAAGGAGCTGTGACTCCCATCAAGGACCAAGGCCAATGTGGATGCTGTTGGGCTTTCTCAGCAGTGGCAGCCACGGAAGGAATTACTCAACTTTCAACTGGTAAGTTGATTTCTTTGTCCGAACAAGAGTTAGTGGACTGTGATGTCAATGGTGAAGACCAAGGCTGTGAGGGAGGCTTGATGGATGATGCCTTTCAGTTCATCAATCAAAATCATGGACTTAGTACCGAGGCTAATTACCCCTATACTGGTGTTGATGGTACATGCAATGCCAAGAAGGAAGCAAACCATGCAGCCTCGATAACTGGCCATGAAGATGTGCCCGCAAACAGTGAAAGTGCACTTCTTAAGGCTGTCGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATCTGATTTCCAGTTCTATTCAAGTGGTGTTTTCACAGGAACCTGTGGAACAAGCCTAGATCATGGTGTTACCGCTGTTGGTTATGGCGTCAGTGATGATGGGACTAAGTATTGGTTGGTGAAGAACTCATGGGGGGCAGAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGCACAGGAAGGTCTTTGTGGTATTGCTATGGAAGCCTCTTACCCCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

340

Amino Acids

37.25

Weight (kDa)

4.77

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	1.5e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 339	3.7e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AciI	CCGC	3 cut(s)	82, 714, 858
AclWI	GGATC	2 cut(s)	37, 793
AcoI	YGGCCR	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	873
AfaI	GTAC	4 cut(s)	231, 616, 652, 944
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	638
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	190, 310, 346, 486, 807
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	2 cut(s)	371, 398
AluI	AGCT	2 cut(s)	371, 398
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	37, 793
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	3 cut(s)	36, 421, 697
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	3 cut(s)	458, 683, 968
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	554, 916, 944
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	2 cut(s)	714, 733
BalI	TGGCCA	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	57, 552
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	3 cut(s)	470, 695, 955
BccI	CCATC	5 cut(s)	121, 416, 565, 641, 878
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	780, 842
BfoI	RGCGCY	1 cut(s)	178
BfrI	CTTAAG	1 cut(s)	737
BisI	GCNGC	3 cut(s)	459, 684, 969
BlsI	GCNGC	3 cut(s)	460, 685, 970
Bme18I	GGWCC	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	826
BmsI	GCATC	4 cut(s)	85, 422, 568, 766
BpiI	GAAGAC	2 cut(s)	57, 552
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	873
BsaJI	CCNNGG	4 cut(s)	418, 462, 550, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse1I	ACTGG	6 cut(s)	16, 386, 493, 643, 700, 796
Bse3DI	GCAATG	4 cut(s)	105, 128, 156, 664
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	4 cut(s)	418, 462, 550, 618
BseGI	GGATG	3 cut(s)	132, 437, 580
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMI	GCAATG	4 cut(s)	105, 128, 156, 664
BseMII	CTCAG	2 cut(s)	153, 462
BseNI	ACTGG	6 cut(s)	16, 386, 493, 643, 700, 796
BseSI	GKGCMC	2 cut(s)	714, 733
BseXI	GCAGC	3 cut(s)	470, 695, 955
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	3 cut(s)	38, 423, 699
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	3 cut(s)	38, 423, 699
Bsp1286I	GDGCHC	2 cut(s)	714, 733
Bsp143I	GATC	3 cut(s)	42, 785, 844
BspACI	CCGC	3 cut(s)	82, 714, 858
BspANI	GGCC	3 cut(s)	38, 423, 699
BspCNI	CTCAG	2 cut(s)	154, 461
BspDI	ATCGAT	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	2 cut(s)	37, 793
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	4 cut(s)	105, 128, 156, 664
BsrI	ACTGG	6 cut(s)	16, 386, 493, 643, 700, 796
BssECI	CCNNGG	4 cut(s)	418, 462, 550, 618
BssMI	GATC	3 cut(s)	42, 785, 844
BssNI	GRCGYC	1 cut(s)	873
BssT1I	CCWWGG	2 cut(s)	418, 550
Bst4CI	ACNGT	3 cut(s)	364, 530, 722
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	873
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	369, 714
BstDEI	CTNAG	4 cut(s)	162, 448, 611, 891
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	132, 437, 580
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	45, 788, 847
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	42, 785, 844
BstMWI	GCNNNNNNNGC	5 cut(s)	449, 458, 680, 776, 1001
BstNSI	RCATGY	1 cut(s)	657
BstSLI	GKGCMC	2 cut(s)	714, 733
BstV1I	GCAGC	3 cut(s)	470, 695, 955
BstV2I	GAAGAC	2 cut(s)	57, 552
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	38, 423, 699
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	3 cut(s)	132, 437, 580
BtsI	GCAGTG	2 cut(s)	459, 1014
BtsIMutI	CAGTG	5 cut(s)	23, 459, 727, 883, 1014
Cac8I	GCNNGC	2 cut(s)	369, 714
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	4 cut(s)	230, 615, 651, 943
CviAII	CATG	8 cut(s)	49, 317, 605, 654, 680, 701, 848, 915
CviQI	GTAC	4 cut(s)	230, 615, 651, 943
DdeI	CTNAG	4 cut(s)	162, 448, 611, 891
DpnI	GATC	3 cut(s)	44, 787, 846
DpnII	GATC	3 cut(s)	42, 785, 844
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	418, 550
Eco47I	GGWCC	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	418, 550
ErhI	CCWWGG	2 cut(s)	418, 550
FaeI	CATG	8 cut(s)	52, 320, 608, 657, 683, 704, 851, 918
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	8 cut(s)	48, 316, 604, 653, 679, 700, 847, 914
FauI	CCCGC	2 cut(s)	89, 721
Fnu4HI	GCNGC	3 cut(s)	459, 684, 969
FokI	GGATG	3 cut(s)	139, 444, 587
Fsp4HI	GCNGC	3 cut(s)	459, 684, 969
FspBI	CTAG	2 cut(s)	780, 842
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	3 cut(s)	459, 684, 969
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	38, 423, 699
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	8 cut(s)	52, 320, 608, 657, 683, 704, 851, 918
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	212, 306, 403
HphI	GGTGA	3 cut(s)	554, 916, 944
Hpy166II	GTNNAC	4 cut(s)	232, 288, 526, 731
Hpy188I	TCNGA	3 cut(s)	70, 511, 790
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	4 cut(s)	232, 288, 526, 731
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	160, 461, 661, 932, 971
HpyCH4III	ACNGT	3 cut(s)	364, 530, 722
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	8 cut(s)	21, 98, 266, 657, 683, 731, 955, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	449, 458, 680, 776, 1001
HpyF3I	CTNAG	4 cut(s)	162, 448, 611, 891
HpySE526I	ACGT	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	8 cut(s)	52, 320, 608, 657, 683, 704, 851, 918
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	42, 785, 844
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	470, 695, 955
LweI	GCATC	4 cut(s)	85, 422, 568, 766
MaeI	CTAG	2 cut(s)	780, 842
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	358, 400, 853
MalI	GATC	3 cut(s)	44, 787, 846
MboI	GATC	3 cut(s)	42, 785, 844
MboII	GAAGA	7 cut(s)	57, 207, 293, 557, 716, 919, 947
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	2 cut(s)	714, 733
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	3 cut(s)	245, 471, 625
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	8 cut(s)	56, 304, 378, 553, 557, 613, 697, 1015
Mox20I	TGGCCA	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	3 cut(s)	248, 738, 1021
MslI	CAYNNNNRTG	2 cut(s)	705, 950
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	860
MspCI	CTTAAG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	957
MwoI	GCNNNNNNNGC	5 cut(s)	449, 458, 680, 776, 1001
NdeII	GATC	3 cut(s)	42, 785, 844
NlaIII	CATG	8 cut(s)	52, 320, 608, 657, 683, 704, 851, 918
NlaIV	GGNNCC	1 cut(s)	826
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	212, 306
PkrI	GCNGC	3 cut(s)	460, 685, 970
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	4 cut(s)	231, 616, 652, 944
RsaNI	GTAC	4 cut(s)	230, 615, 651, 943
RseI	CAYNNNNRTG	2 cut(s)	705, 950
SaqAI	TTAA	3 cut(s)	248, 738, 1021
SatI	GCNGC	3 cut(s)	459, 684, 969
Sau3AI	GATC	3 cut(s)	42, 785, 844
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	714, 733
SetI	ASST	8 cut(s)	145, 241, 273, 373, 400, 760, 830, 982
SfaNI	GCATC	4 cut(s)	85, 422, 568, 766
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	705, 950
SmlI	CTYRAG	2 cut(s)	295, 737
SmoI	CTYRAG	2 cut(s)	295, 737
Sse9I	AATT	3 cut(s)	245, 471, 625
SsiI	CCGC	3 cut(s)	82, 714, 858
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	2 cut(s)	780, 842
StyI	CCWWGG	2 cut(s)	418, 550
TaaI	ACNGT	3 cut(s)	364, 530, 722
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	304, 689
TasI	AATT	3 cut(s)	245, 471, 625
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	212, 306
Tru1I	TTAA	3 cut(s)	248, 738, 1021
Tru9I	TTAA	3 cut(s)	248, 738, 1021
TscAI	CASTG	5 cut(s)	23, 459, 727, 883, 1021
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	458, 683, 968
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	294, 333, 366, 580, 717
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	5 cut(s)	23, 459, 727, 883, 1021
Vha464I	CTTAAG	1 cut(s)	737
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	415
XceI	RCATGY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	780, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.