Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Forward (+)

32176859 .. 32182135

Gene Structure 5277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTTCCTGTAGCCTAGGGACATCATATACTAAAGTTACAAACTTGAACTTGGGTAGAACAAGAGTTGGGATTTCACAGTCGCATGGTGTAAGAACTTGGACACTGCAAAGACCGCAACTTTACTCAGGTTTATCAATATCAAGACGGTCAGAGAAAGTGTTACATGTGCGCAGCGCTCCATCTTTAGAAATTATATCTGCTACAAATTTAGAAGATGGTTCTGAAGAGAGTGATTCTGGTTCAGCAAGCCCGCGCATTCCAAACTTTGATGAGATACAGTCCATGCTTACAACAATATGCGACACAACTTCAGTTGCAGAGGTTGAGTTAAAATTACATGTGGTGAGGGAGTTGACTGAAGGTAGCACTCCACCTCCTTCAATTCCTGCTCCTGTCAGTGCAAGTACACCTGCTGAAGCACCCGAATCAAATGGATCAGTTCCTTCACAATCTTTAGCTATCACTAGATCAGAACCTTCTTCAAGAGATATCCAAACATTATTAGATAAAGCTGCTGATGAAGGCTTGGTGTTAATTCAGTCTCCACGAGTGGGGTCATTTAGAAGATCTCGAACAATAAAGGGAAAGCGTGCTCCTCCATCATGTAAAGAGAAGCAAATAGTGAAAGAGGGCCAAGTGATTTGCTACATCGAACAGCTAGGAGGAGAGCTTCCAATTGAGTCTGATGTGGCCGGGGAGGTCATCAAGATACTACGGGAAGATGGTGAACCTGTTGGATACGGTGATGCTCTGATTGCAGTTCTCCCCTCGTTTCCTGGGATTAAGAAGCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

266

Amino Acids

28.49

Weight (kDa)

5.77

Isoelectric Point (pI)

64.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	181 - 253	1.6e-07	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	421
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	116, 254
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	4 cut(s)	246, 297, 381, 438
AfaI	GTAC	1 cut(s)	409
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflIII	ACRYGT	2 cut(s)	166, 340
AgsI	TTSAA	4 cut(s)	49, 384, 486, 797
AjnI	CCWGG	1 cut(s)	778
AluBI	AGCT	5 cut(s)	461, 515, 661, 673, 793
AluI	AGCT	5 cut(s)	461, 515, 661, 673, 793
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	2 cut(s)	634, 693
ApeKI	GCWGC	2 cut(s)	174, 515
ApoI	RAATTY	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	3 cut(s)	174, 179, 258
AspS9I	GGNCC	1 cut(s)	634
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	3 cut(s)	358, 740, 758
AvrII	CCTAGG	1 cut(s)	16
BauI	CACGAG	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	186, 502
BccI	CCATC	4 cut(s)	190, 212, 610, 719
BciT130I	CCWGG	1 cut(s)	780
BciVI	GTATCC	1 cut(s)	734
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	3 cut(s)	17, 468, 662
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	734
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	2 cut(s)	175, 516
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	176, 517
Bme1390I	CCNGG	2 cut(s)	697, 780
BmgT120I	GGNCC	1 cut(s)	634
BmrFI	CCNGG	2 cut(s)	697, 780
BmsI	GCATC	1 cut(s)	739
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	3 cut(s)	16, 696, 779
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	3 cut(s)	16, 696, 779
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	588, 681
BseXI	GCAGC	2 cut(s)	186, 502
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	636, 695
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	696
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	636, 695
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	437, 470, 569
BspACI	CCGC	2 cut(s)	116, 254
BspANI	GGCC	2 cut(s)	636, 695
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	16, 696, 779
BssMI	GATC	3 cut(s)	437, 470, 569
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	4 cut(s)	81, 150, 282, 746
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	250, 254, 594
BstDEI	CTNAG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	174, 179, 258
BstKTI	GATC	3 cut(s)	440, 473, 572
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	3 cut(s)	437, 470, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 758
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	2 cut(s)	170, 344
BstSCI	CCNGG	2 cut(s)	695, 778
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	186, 502
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	2 cut(s)	636, 695
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 406
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	250, 254, 594
CfoI	GCGC	3 cut(s)	174, 179, 258
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	5 cut(s)	86, 167, 286, 341, 606
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	3 cut(s)	439, 472, 571
DpnII	GATC	3 cut(s)	437, 470, 569
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	493
Eco47III	AGCGCT	1 cut(s)	178
Eco57I	CTGAAG	4 cut(s)	246, 297, 381, 438
EcoRII	CCWGG	1 cut(s)	778
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	5 cut(s)	89, 170, 289, 344, 609
FaiI	YATR	9 cut(s)	28, 30, 87, 168, 197, 287, 301, 342, 607
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	5 cut(s)	85, 166, 285, 340, 605
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	175, 516
Fsp4HI	GCNGC	2 cut(s)	175, 516
FspBI	CTAG	3 cut(s)	17, 468, 662
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	3 cut(s)	173, 178, 257
GluI	GCNGC	2 cut(s)	175, 516
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	636, 695
HapII	CCGG	1 cut(s)	696
HhaI	GCGC	3 cut(s)	174, 179, 258
Hin1II	CATG	5 cut(s)	89, 170, 289, 344, 609
Hin6I	GCGC	3 cut(s)	172, 177, 256
HinP1I	GCGC	3 cut(s)	172, 177, 256
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	3 cut(s)	236, 428, 683
HpaII	CCGG	1 cut(s)	696
HphI	GGTGA	3 cut(s)	358, 740, 758
Hpy166II	GTNNAC	3 cut(s)	357, 410, 731
Hpy188I	TCNGA	5 cut(s)	154, 226, 475, 688, 756
Hpy188III	TCNNGA	4 cut(s)	144, 486, 573, 709
Hpy8I	GTNNAC	3 cut(s)	357, 410, 731
HpyAV	CCTTC	5 cut(s)	356, 390, 456, 489, 518
HpyCH4III	ACNGT	4 cut(s)	81, 150, 282, 746
HpyCH4V	TGCA	4 cut(s)	109, 320, 404, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 758
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	5 cut(s)	89, 170, 289, 344, 609
HspAI	GCGC	3 cut(s)	172, 177, 256
Kzo9I	GATC	3 cut(s)	437, 470, 569
LmnI	GCTCC	3 cut(s)	184, 397, 601
Lsp1109I	GCAGC	2 cut(s)	186, 502
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	3 cut(s)	17, 468, 662
MaeIII	GTNAC	2 cut(s)	37, 162
MalI	GATC	3 cut(s)	439, 472, 571
MboI	GATC	3 cut(s)	437, 470, 569
MboII	GAAGA	5 cut(s)	227, 239, 474, 579, 734
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	6 cut(s)	192, 208, 335, 384, 537, 678
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	8 cut(s)	316, 342, 387, 609, 625, 659, 694, 781
MseI	TTAA	3 cut(s)	332, 536, 786
MspI	CCGG	1 cut(s)	696
MspR9I	CCNGG	2 cut(s)	697, 780
MteI	GCGCNGCGC	1 cut(s)	175
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	780
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	115, 758
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	3 cut(s)	437, 470, 569
NlaIII	CATG	5 cut(s)	89, 170, 289, 344, 609
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	2 cut(s)	170, 344
PaqCI	CACCTGC	1 cut(s)	421
PciI	ACATGT	2 cut(s)	166, 340
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	236, 428
PkrI	GCNGC	2 cut(s)	176, 517
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PscI	ACATGT	2 cut(s)	166, 340
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspPI	GGNCC	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	332, 536, 786
SatI	GCNGC	2 cut(s)	175, 516
Sau3AI	GATC	3 cut(s)	437, 470, 569
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	697, 780
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	10
Sse9I	AATT	6 cut(s)	192, 208, 335, 384, 537, 678
SsiI	CCGC	2 cut(s)	116, 254
SspMI	CTAG	3 cut(s)	17, 468, 662
StyD4I	CCNGG	2 cut(s)	695, 778
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	4 cut(s)	81, 150, 282, 746
TaqI	TCGA	2 cut(s)	574, 654
TasI	AATT	6 cut(s)	192, 208, 335, 384, 537, 678
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	236, 428
Tru1I	TTAA	3 cut(s)	332, 536, 786
Tru9I	TTAA	3 cut(s)	332, 536, 786
TscAI	CASTG	2 cut(s)	111, 406
TseI	GCWGC	2 cut(s)	174, 515
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	111, 406
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	2 cut(s)	170, 344
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 468, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.