Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Forward (+)

5910917 .. 5915769

Gene Structure 4853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G080100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGATTTGGGTGGCAGGTAGCCTTGGGACATTGAATGCCAAAATTACAAACTTGAACTTCGGTAGAACAAGAGTCGGGATTCTACAATCATCTGGTCTAAAACCTTGGACAGGGCAAAAACCACAATTGTACTCATGTTTGTCAATATCAAGACGACCAGACAATGTATTACGTGCACACAGTGGTCCATCTTTAGAAACCCTGCCTACTACAAGTTTAGAAGATGGTCCTGCAGAGAGTAGAGATTCTGGTTCGACAAACCAGCTCATTCCAAATTTTGACGAGGTAGAATCTTTGGTCACAACAATATGCGATACAACTTCAGTTGCTGAGTTCGAATTAAAAATCGGTGGATTTCGGTTACATGTGCTGAGGGAGTTGACTGAAAAAATTAGCACTCTACCTCCCCCAAGTCCTGCTCCTGTTAGTGTGAATGCAACTTCTGAAGCACCTGCTTCGAATGGCTCAGTTCCTACACAATCTTTAGCTGTCATTAGACAAGAACATTCTTCAAGGAATATCCAGACATTGCTAGATAGAGCTGCAGATGATGGCTTGGTGTTAATTCATTCTCCACGAGTGGGGTTATTTAGGAGATCTCGAACGATAAAGGGGAAGCGTGCTCCGCCATCATGTAAAGAGAAGCAAATAGTGAAGGAAGGCCAAGTGATTTGCTACATAGAACAGCTTGGTGGAGAGCTTCCAATTGAGTCTGATGTATCTGGGGAGGTCATCAAGATACTACGAGAAGATGGCGATCCCGTTGGATATGGTGATGCTCTCATTGCAGTTCTCCCCTCATTTCCTGGGATTAAGAAACTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

276

Amino Acids

29.62

Weight (kDa)

6.91

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	2 cut(s)	5, 460
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	3 cut(s)	306, 465, 806
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	110, 581
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	34, 55, 513
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	5 cut(s)	265, 488, 542, 688, 700
AluI	AGCT	5 cut(s)	265, 488, 542, 688, 700
Alw21I	GWGCWC	2 cut(s)	178, 625
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	661
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	185, 227
AsuHPI	GGTGA	1 cut(s)	785
AsuII	TTCGAA	2 cut(s)	336, 458
AvaII	GGWCC	2 cut(s)	185, 227
BaeGI	GKGCMC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	576
Bbv12I	GWGCWC	2 cut(s)	178, 625
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	5 cut(s)	196, 218, 545, 637, 746
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	1 cut(s)	807
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	231, 543
BfuAI	ACCTGC	2 cut(s)	5, 460
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	2 cut(s)	185, 227
BmgT120I	GGNCC	2 cut(s)	185, 227
BmrFI	CCNGG	1 cut(s)	807
BmsI	GCATC	1 cut(s)	766
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	2 cut(s)	336, 458
BsaAI	YACGTR	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	22, 104, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 581
Bse3DI	GCAATG	2 cut(s)	527, 783
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	3 cut(s)	22, 104, 806
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	110, 581
BseMI	GCAATG	2 cut(s)	527, 783
BseMII	CTCAG	3 cut(s)	321, 362, 480
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	178, 625
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	110, 581
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	2 cut(s)	40, 439
BsnI	GGCC	1 cut(s)	663
Bsp119I	TTCGAA	2 cut(s)	336, 458
Bsp1286I	GDGCHC	2 cut(s)	178, 625
Bsp143I	GATC	2 cut(s)	596, 757
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	3 cut(s)	322, 363, 479
BspMAI	CTGCAG	2 cut(s)	235, 547
BspMI	ACCTGC	2 cut(s)	5, 460
BspPI	GGATC	1 cut(s)	752
BspT104I	TTCGAA	2 cut(s)	336, 458
BsrDI	GCAATG	2 cut(s)	527, 783
BssECI	CCNNGG	3 cut(s)	22, 104, 806
BssMI	GATC	2 cut(s)	596, 757
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	22, 104
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	173
BstBI	TTCGAA	2 cut(s)	336, 458
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	3 cut(s)	330, 371, 466
BstENI	CCTNNNNNAGG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	599, 760
BstMBI	GATC	2 cut(s)	596, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	625, 785
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	805
BstSFI	CTRYAG	2 cut(s)	231, 543
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	187
BveI	ACCTGC	2 cut(s)	5, 460
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	185, 227
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	135, 365, 633
CviJI	RGCY	9 cut(s)	21, 265, 465, 488, 542, 555, 663, 688, 700
CviKI_1	RGCY	9 cut(s)	21, 265, 465, 488, 542, 555, 663, 688, 700
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	3 cut(s)	330, 371, 466
DpnI	GATC	2 cut(s)	598, 759
DpnII	GATC	2 cut(s)	596, 757
DraIII	CACNNNGTG	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	22, 104
Eco47I	GGWCC	2 cut(s)	185, 227
Eco57I	CTGAAG	3 cut(s)	306, 465, 806
EcoNI	CCTNNNNNAGG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	22, 104
ErhI	CCWWGG	2 cut(s)	22, 104
FaeI	CATG	3 cut(s)	138, 368, 636
FaiI	YATR	6 cut(s)	136, 310, 366, 634, 680, 771
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	134, 364, 632
Fnu4HI	GCNGC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	663
Hin1II	CATG	3 cut(s)	138, 368, 636
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	5 cut(s)	72, 79, 245, 290, 710
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	2 cut(s)	176, 381
Hpy188I	TCNGA	2 cut(s)	445, 715
Hpy188III	TCNNGA	5 cut(s)	76, 150, 523, 600, 736
Hpy8I	GTNNAC	2 cut(s)	176, 381
HpyAV	CCTTC	2 cut(s)	649, 653
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	176, 233, 437, 545, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	625, 785
HpyF3I	CTNAG	3 cut(s)	330, 371, 466
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	138, 368, 636
Kzo9I	GATC	2 cut(s)	596, 757
LmnI	GCTCC	2 cut(s)	424, 628
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	298, 360
MalI	GATC	2 cut(s)	598, 759
MboI	GATC	2 cut(s)	596, 757
MboII	GAAGA	3 cut(s)	233, 501, 761
MfeI	CAATTG	2 cut(s)	125, 705
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	178, 625
MluCI	AATT	7 cut(s)	42, 125, 274, 338, 390, 564, 705
MlyI	GAGTC	2 cut(s)	81, 719
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	5 cut(s)	277, 366, 414, 721, 808
MseI	TTAA	3 cut(s)	341, 563, 813
MspR9I	CCNGG	1 cut(s)	807
MunI	CAATTG	2 cut(s)	125, 705
Mva1269I	GAATGC	2 cut(s)	40, 439
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	2 cut(s)	625, 785
NdeII	GATC	2 cut(s)	596, 757
NlaIII	CATG	3 cut(s)	138, 368, 636
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	2 cut(s)	336, 458
PaqCI	CACCTGC	1 cut(s)	460
PciI	ACATGT	1 cut(s)	364
PctI	GAATGC	2 cut(s)	40, 439
PfeI	GAWTC	3 cut(s)	79, 245, 290
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	2 cut(s)	80, 718
PpsI	GAGTC	2 cut(s)	80, 718
Ppu21I	YACGTR	1 cut(s)	173
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspPI	GGNCC	2 cut(s)	185, 227
PstI	CTGCAG	2 cut(s)	235, 547
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	341, 563, 813
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	2 cut(s)	596, 757
Sau96I	GGNCC	2 cut(s)	185, 227
SchI	GAGTC	2 cut(s)	81, 719
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	2 cut(s)	178, 625
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	2 cut(s)	231, 543
SfuI	TTCGAA	2 cut(s)	336, 458
SinI	GGWCC	2 cut(s)	185, 227
Sse9I	AATT	7 cut(s)	42, 125, 274, 338, 390, 564, 705
SsiI	CCGC	1 cut(s)	626
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	2 cut(s)	22, 104
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	4 cut(s)	254, 336, 458, 601
TasI	AATT	7 cut(s)	42, 125, 274, 338, 390, 564, 705
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	79, 245, 290
Tru1I	TTAA	3 cut(s)	341, 563, 813
Tru9I	TTAA	3 cut(s)	341, 563, 813
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	187
VneI	GTGCAC	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	185, 227
XagI	CCTNNNNNAGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.