Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Reverse (-)

23381994 .. 23387304

Gene Structure 5311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTTCCTGTAGCCTAGGGACATCATACCCTAAAATTACAAACTTGAACTTGGGTAGAACAAGAGTTGGGATTTCACAGTCGTATGGTGTAAGAACTTGGACACTGCAAAGACCGCAACTTTACTCAGGTTTGTCAATATCAAGACGGTCAGAGAAAGTGTCACATGTACACAGTGCTCCATCTTTAGAAATCATATCTGCGACAAGTTCAGATGATGGTTCTAAAGAGAGTGATTCTGGTTCAGCCAGCCCGCGCATTCCAAACTTTGATGAGATACAGTCTTTGCTTACAACAATATGTGATACAACTTCAGTTGCAGAGGTTCAGTTAAAACTCGGTGGATTTCGGTTACATGTGGTGAGAGAGTTGACTGAAAATGTTAGCACTCCACCTCCTTCGATTCCCGCTCCTGTTAGTGTAAGTACACCTGCTGAAGTACCCGAATCAAATGGATCAGTTCCTACACAATCTTTAGCTATCACTAGGGCAGAGTCTTCTTCAAGAGATATTCAAACATTGTTAGATAAAGCTGCTGATGAAGGCTTGGTGTTAATTCAGTCTCCACGGGTTGGGTCATTTAGGAGATCTCGAACAATAAAGGGGAAGCGTGCTCCTCCATCATGTAAAGAGAAGCAAATAGTGAAAGAGGGCCAAGTGATCTGCTACATAGAACAGCTAGGGGGAGAACTTCCAATTGAGTCTGATGTGGCTGGGGAGGTCATCAAGATACTACGAGAAGATGGTGAACCGGTTGGATACGGTGATGCTCTGGTTGCCGTTCTTCCTTCGTTTCCAGGGATTAAGAAGCTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

273

Amino Acids

29.11

Weight (kDa)

6.85

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	187 - 260	1.3e-07	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccBSI	CCGCTC	1 cut(s)	410
AccII	CGCG	1 cut(s)	256
AciI	CCGC	3 cut(s)	116, 254, 408
AclWI	GGATC	1 cut(s)	463
AcuI	CTGAAG	3 cut(s)	297, 456, 797
AfaI	GTAC	3 cut(s)	171, 427, 441
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflIII	ACRYGT	2 cut(s)	166, 355
AgeI	ACCGGT	1 cut(s)	751
AgsI	TTSAA	3 cut(s)	49, 504, 515
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	4 cut(s)	479, 533, 679, 811
AluI	AGCT	4 cut(s)	479, 533, 679, 811
Alw21I	GWGCWC	2 cut(s)	181, 616
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	1 cut(s)	533
AsiGI	ACCGGT	1 cut(s)	751
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	373, 758, 776
AvrII	CCTAGG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	2 cut(s)	181, 616
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	4 cut(s)	190, 212, 628, 737
BceAI	ACGGC	1 cut(s)	764
BciT130I	CCWGG	1 cut(s)	798
BciVI	GTATCC	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	3 cut(s)	17, 486, 680
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	752
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	1 cut(s)	534
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	16, 566, 797
BsaWI	WCCGGW	1 cut(s)	751
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse118I	RCCGGY	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	798
BseDI	CCNNGG	3 cut(s)	16, 566, 797
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	654
BshTI	ACCGGT	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	181, 616
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	654
Bsp1286I	GDGCHC	2 cut(s)	181, 616
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	455, 587, 660
BspACI	CCGC	3 cut(s)	116, 254, 408
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	3 cut(s)	16, 566, 797
BssMI	GATC	3 cut(s)	455, 587, 660
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	5 cut(s)	81, 150, 176, 282, 764
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	250, 254, 612
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	566
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	458, 590, 663
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	3 cut(s)	455, 587, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 776
BstNI	CCWGG	1 cut(s)	798
BstNSI	RCATGY	2 cut(s)	170, 359
BstSCI	CCNGG	1 cut(s)	796
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	752
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	566
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 181
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	250, 254, 612
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	652
Csp6I	GTAC	3 cut(s)	170, 426, 440
CspAI	ACCGGT	1 cut(s)	751
CviAII	CATG	3 cut(s)	167, 356, 624
CviQI	GTAC	3 cut(s)	170, 426, 440
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	3 cut(s)	457, 589, 662
DpnII	GATC	3 cut(s)	455, 587, 660
Eco130I	CCWWGG	1 cut(s)	16
Eco57I	CTGAAG	3 cut(s)	297, 456, 797
EcoRII	CCWGG	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	170, 359, 627
FaiI	YATR	8 cut(s)	28, 87, 168, 197, 301, 357, 625, 671
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	166, 355, 623
FauI	CCCGC	2 cut(s)	261, 415
Fnu4HI	GCNGC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	3 cut(s)	17, 486, 680
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	534
GsaI	CCCAGC	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	1 cut(s)	752
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	170, 359, 627
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	5 cut(s)	236, 403, 446, 494, 701
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	3 cut(s)	373, 758, 776
Hpy166II	GTNNAC	4 cut(s)	172, 372, 428, 749
Hpy188I	TCNGA	3 cut(s)	154, 214, 706
Hpy188III	TCNNGA	4 cut(s)	144, 504, 591, 727
Hpy8I	GTNNAC	4 cut(s)	172, 372, 428, 749
HpyAV	CCTTC	3 cut(s)	408, 536, 798
HpyCH4III	ACNGT	5 cut(s)	81, 150, 176, 282, 764
HpyCH4V	TGCA	2 cut(s)	109, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 776
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	170, 359, 627
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	455, 587, 660
LmnI	GCTCC	3 cut(s)	184, 415, 619
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	3 cut(s)	17, 486, 680
MaeIII	GTNAC	2 cut(s)	162, 351
MalI	GATC	3 cut(s)	457, 589, 662
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	3 cut(s)	455, 587, 660
MboII	GAAGA	4 cut(s)	489, 492, 752, 776
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	181, 616
MluCI	AATT	3 cut(s)	36, 555, 696
MlyI	GAGTC	2 cut(s)	503, 710
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	5 cut(s)	316, 405, 627, 643, 712
MseI	TTAA	3 cut(s)	332, 554, 804
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	798
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	115, 776
NdeII	GATC	3 cut(s)	455, 587, 660
NlaIII	CATG	3 cut(s)	170, 359, 627
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	2 cut(s)	170, 359
PaqCI	CACCTGC	1 cut(s)	439
PciI	ACATGT	2 cut(s)	166, 355
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	236, 403, 446
PflMI	CCANNNNNTGG	1 cut(s)	572
PinAI	ACCGGT	1 cut(s)	751
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	2 cut(s)	502, 709
PpsI	GAGTC	2 cut(s)	502, 709
PscI	ACATGT	2 cut(s)	166, 355
Psp6I	CCWGG	1 cut(s)	796
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	796
PspPI	GGNCC	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	3 cut(s)	171, 427, 441
RsaNI	GTAC	3 cut(s)	170, 426, 440
SaqAI	TTAA	3 cut(s)	332, 554, 804
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	3 cut(s)	455, 587, 660
Sau96I	GGNCC	1 cut(s)	652
SchI	GAGTC	2 cut(s)	503, 710
ScrFI	CCNGG	1 cut(s)	798
SduI	GDGCHC	2 cut(s)	181, 616
SetI	ASST	9 cut(s)	133, 327, 397, 433, 481, 535, 681, 723, 813
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	36, 555, 696
SsiI	CCGC	3 cut(s)	116, 254, 408
SspMI	CTAG	3 cut(s)	17, 486, 680
StyD4I	CCNGG	1 cut(s)	796
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	5 cut(s)	81, 150, 176, 282, 764
TaqI	TCGA	2 cut(s)	401, 592
TasI	AATT	3 cut(s)	36, 555, 696
TatI	WGTACW	2 cut(s)	169, 425
TfiI	GAWTC	3 cut(s)	236, 403, 446
Tru1I	TTAA	3 cut(s)	332, 554, 804
Tru9I	TTAA	3 cut(s)	332, 554, 804
TscAI	CASTG	2 cut(s)	111, 181
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	2 cut(s)	111, 181
Van91I	CCANNNNNTGG	1 cut(s)	572
XceI	RCATGY	2 cut(s)	170, 359
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 486, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.