Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372767.1

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 896

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atacagtctatgctttcaacaatatgcgatacaacttcagttgcagaggttgagttaaaactcggtggatttcggttacatgtggtgagggagttgactgaagaaggtagcactccacctcctccaattcctgctcctgtcagtgcaagtacacctgctgatgcacccaaatcaaatggatcagtttcttcacaatctttagctatcactagactagaatcttcttcaagagatatccaaacattattagataaagctgctgatgaaggcttggtgttaattcagtctccacgagtggggtcatttagaagatctcgaacaataaagggaaagcgtgctcctccatcatgtaaagagtcatatgaaatggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

124

Amino Acids

13.25

Weight (kDa)

6.81

Isoelectric Point (pI)

63.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	21, 120
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	18, 228
AluBI	AGCT	2 cut(s)	203, 257
AluI	AGCT	2 cut(s)	203, 257
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	97
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	2 cut(s)	210, 215
BfuAI	ACCTGC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmsI	GCATC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	111, 330
BseXI	GCAGC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	179, 311
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	187
BssMI	GATC	2 cut(s)	179, 311
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	336
BstKTI	GATC	2 cut(s)	182, 314
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	179, 311
BstNSI	RCATGY	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	2 cut(s)	80, 348
CviJI	RGCY	3 cut(s)	203, 257, 270
CviKI_1	RGCY	3 cut(s)	203, 257, 270
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	2 cut(s)	181, 313
DpnII	GATC	2 cut(s)	179, 311
Eco32I	GATATC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	21, 120
EcoRV	GATATC	1 cut(s)	235
FaeI	CATG	2 cut(s)	83, 351
FaiI	YATR	6 cut(s)	11, 25, 81, 349, 361, 363
FatI	CATG	2 cut(s)	79, 347
FauNDI	CATATG	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	210, 215
GluI	GCNGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	83, 351
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	218, 356
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	96, 152
Hpy188III	TCNNGA	2 cut(s)	228, 315
Hpy8I	GTNNAC	2 cut(s)	96, 152
HpyAV	CCTTC	2 cut(s)	98, 260
HpyCH4III	ACNGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	44, 146, 164
Hsp92II	CATG	2 cut(s)	83, 351
Kzo9I	GATC	2 cut(s)	179, 311
LmnI	GCTCC	2 cut(s)	139, 343
LpnPI	CCDG	3 cut(s)	144, 150, 168
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	210, 215
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	2 cut(s)	181, 313
MboI	GATC	2 cut(s)	179, 311
MboII	GAAGA	5 cut(s)	113, 180, 213, 216, 321
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	2 cut(s)	126, 279
MlyI	GAGTC	1 cut(s)	365
MnlI	CCTC	5 cut(s)	40, 81, 129, 132, 351
MseI	TTAA	2 cut(s)	56, 278
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	2 cut(s)	179, 311
NlaIII	CATG	2 cut(s)	83, 351
NspI	RCATGY	1 cut(s)	83
PaqCI	CACCTGC	1 cut(s)	163
PciI	ACATGT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PscI	ACATGT	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	56, 278
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	179, 311
SchI	GAGTC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	6 cut(s)	51, 109, 121, 157, 205, 259
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	126, 279
SspMI	CTAG	2 cut(s)	210, 215
TaaI	ACNGT	1 cut(s)	6
TaqI	TCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	126, 279
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	56, 278
Tru9I	TTAA	2 cut(s)	56, 278
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	148
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	2 cut(s)	210, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.