Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Forward (+)

5316916 .. 5320121

Gene Structure 3206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCGGCAGTAGACCTTAGTAGAGTAAGATCTGGAAGCTTACTGATACCATACAATCAAAGATCATTGCTTCGACAAAGGCCAGTGAAGTACTTGAGTCTGAAGACAACATTTGGATCTGTGAAAGCTGTCCAAGTGTCTACTGTCCCAACTGCAGAAACATCAGCTACTATAGAAGTAAAAGATTCTAAAGAGATCAAGTCATCTCGATTAAACGCTCAGCTTGTTCCCAAGCCTTCTGAGGTGGAAGCCCTTGTAACTGAAATATGCGATTCTTCATCAATTGCAGAGTTTGAACTGAAACTGGGGGGTTTCCGACTATATGTAGCAAGGAACATAGCTGACAATAGTAGTCTACAACCTCCGCCAACTCCTGCTGTGACTGCTTCAAATGCAACTACCGAGAGTCCTGAGTCGAATGGATCAGCTTCCTCTACTTCACTGGCTATCTCAAAACCAGCATCGTCAGCCGCTGATCAGGGTTTGATGATTCTCCAATCTCCAAAAGTAGGGTTCTTCAGGAGATCCAAAACCATAAAGGGTAAACGCCTGCCTTCGTCTTGTAAAGAGAAAGACCAAGTGAAAGAAGGTCAAATTCTGTGCTACATTGAACAACTCGGTGGCCAATTTCCAATCGAGTCTGATGTTACCGGCGAGGTAGTCAAGATACTCCGAGAAGATGGAGGCAAAGCCTGTAGGATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

247

Amino Acids

26.44

Weight (kDa)

9.36

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	48, 176, 391
AciI	CCGC	2 cut(s)	401, 507
AclWI	GGATC	3 cut(s)	160, 466, 555
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	2 cut(s)	158, 538
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	3 cut(s)	332, 426, 647
AluBI	AGCT	6 cut(s)	75, 164, 203, 259, 377, 464
AluI	AGCT	6 cut(s)	75, 164, 203, 259, 377, 464
AlwI	GGATC	3 cut(s)	160, 466, 555
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	2 cut(s)	116, 658
ApoI	RAATTY	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	16
AvrII	CCTAGG	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	146
BccI	CCATC	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	729
BclI	TGATCA	1 cut(s)	511
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	4 cut(s)	10, 189, 207, 730
BfuI	GTATCC	1 cut(s)	729
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	1 cut(s)	507
BlnI	CCTAGG	1 cut(s)	16
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	508
BmcAI	AGTACT	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	3 cut(s)	119, 345, 483
Bse3DI	GCAATG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	3 cut(s)	267, 269, 438
BseNI	ACTGG	3 cut(s)	119, 345, 483
BshFI	GGCC	2 cut(s)	118, 660
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	118, 660
Bsp143I	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	401, 507
BspANI	GGCC	2 cut(s)	118, 660
BspCNI	CTCAG	3 cut(s)	268, 268, 439
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	3 cut(s)	160, 466, 555
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	119, 345, 483
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	53, 255, 276, 447
BstKTI	GATC	7 cut(s)	68, 101, 155, 234, 461, 514, 563
BstMBI	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 428, 503
BstSFI	CTRYAG	4 cut(s)	10, 189, 207, 730
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	3 cut(s)	65, 152, 560
BstYI	RGATCY	3 cut(s)	65, 152, 560
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	118, 660
BtsIMutI	CAGTG	2 cut(s)	126, 476
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	127
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	4 cut(s)	53, 255, 276, 447
DpnI	GATC	7 cut(s)	67, 100, 154, 233, 460, 513, 562
DpnII	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
EaeI	YGGCCR	1 cut(s)	658
EciI	GGCGGA	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	158, 538
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaiI	YATR	7 cut(s)	88, 209, 304, 358, 360, 374, 572
FaqI	GGGAC	1 cut(s)	167
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	3 cut(s)	48, 176, 391
Fnu4HI	GCNGC	1 cut(s)	507
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	118, 660
HapII	CCGG	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	7 cut(s)	133, 221, 308, 442, 449, 526, 674
HpaII	CCGG	1 cut(s)	687
Hpy166II	GTNNAC	4 cut(s)	49, 177, 392, 581
Hpy188I	TCNGA	5 cut(s)	138, 277, 353, 679, 710
Hpy188III	TCNNGA	5 cut(s)	69, 243, 446, 556, 700
Hpy8I	GTNNAC	4 cut(s)	49, 177, 392, 581
HpyAV	CCTTC	3 cut(s)	282, 600, 617
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	191, 323, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 428, 503
HpyF3I	CTNAG	4 cut(s)	53, 255, 276, 447
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	292, 415, 682
MalI	GATC	7 cut(s)	67, 100, 154, 233, 460, 513, 562
MboI	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
MboII	GAAGA	4 cut(s)	151, 303, 544, 725
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	3 cut(s)	65, 152, 560
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	4 cut(s)	30, 318, 630, 662
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	4 cut(s)	142, 451, 458, 683
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	5 cut(s)	271, 408, 478, 685, 713
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	2 cut(s)	33, 248
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	419, 428, 503
NdeII	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	221, 308, 526
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	4 cut(s)	141, 450, 457, 682
PpsI	GAGTC	4 cut(s)	141, 450, 457, 682
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	3 cut(s)	65, 152, 560
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	33, 248
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	7 cut(s)	65, 98, 152, 231, 458, 511, 560
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	4 cut(s)	142, 451, 458, 683
SfaNI	GCATC	1 cut(s)	506
SfcI	CTRYAG	4 cut(s)	10, 189, 207, 730
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	4 cut(s)	30, 318, 630, 662
SsiI	CCGC	2 cut(s)	401, 507
SspMI	CTAG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	4 cut(s)	109, 244, 452, 672
TasI	AATT	4 cut(s)	30, 318, 630, 662
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	3 cut(s)	221, 308, 526
Tru1I	TTAA	2 cut(s)	33, 248
Tru9I	TTAA	2 cut(s)	33, 248
TscAI	CASTG	2 cut(s)	126, 483
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	126, 483
XapI	RAATTY	1 cut(s)	630
XmaJI	CCTAGG	1 cut(s)	16
XmiI	GTMKAC	3 cut(s)	48, 176, 391
XspI	CTAG	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.