Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013824.1

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Forward (+)

3105 .. 3901

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013824.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggcttcctgtagcctagggacatcatatactaaaattacaaacttgaacttgggtagaacaagagttgggatttcacagtcgtatggtgcaagaacttggacactgcaaagaccgcagctttactcaggtttatcaatatcaagacggttagagaaagtgttacatgtgcgcagcgctccatctttagaaatcatatgtaagttcttccggccctccatcagtaaatcatctaatttggaatttggttatcagtgcttgaaaatcggaaatgtgaagtttgttgggttattgtttaataattgtgttctcatggatgcgtgtgttttgttctcactagtctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

9.91

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AciI	CCGC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	242
AfeI	AGCGCT	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	49, 262
AhlI	ACTAGT	1 cut(s)	337
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	118, 174
ApoI	RAATTY	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	174, 179
AspS9I	GGNCC	1 cut(s)	213
AvrII	CCTAGG	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	130, 186
BccI	CCATC	2 cut(s)	190, 227
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	2 cut(s)	17, 338
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	2 cut(s)	119, 175
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	120, 176
BmgT120I	GGNCC	1 cut(s)	213
BmsI	GCATC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	130, 186
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	81, 150
BstDEI	CTNAG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	174, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	130, 186
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 260
CfoI	GCGC	2 cut(s)	174, 179
Cfr13I	GGNCC	1 cut(s)	213
CviAII	CATG	2 cut(s)	167, 313
CviJI	RGCY	4 cut(s)	5, 15, 121, 214
CviKI_1	RGCY	4 cut(s)	5, 15, 121, 214
DdeI	CTNAG	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	170, 316
FaiI	YATR	7 cut(s)	28, 30, 87, 168, 197, 199, 314
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	166, 312
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	119, 175
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	119, 175
FspBI	CTAG	2 cut(s)	17, 338
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	2 cut(s)	173, 178
GluI	GCNGC	2 cut(s)	119, 175
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	2 cut(s)	174, 179
Hin1II	CATG	2 cut(s)	170, 316
Hin6I	GCGC	2 cut(s)	172, 177
HinP1I	GCGC	2 cut(s)	172, 177
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	144, 345
HpyCH4III	ACNGT	2 cut(s)	81, 150
HpyCH4V	TGCA	2 cut(s)	92, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	170, 316
HspAI	GCGC	2 cut(s)	172, 177
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	3 cut(s)	22, 114, 224
Lsp1109I	GCAGC	2 cut(s)	130, 186
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	17, 338
MaeIII	GTNAC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	4 cut(s)	36, 235, 242, 301
MnlI	CCTC	1 cut(s)	226
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	211
MteI	GCGCNGCGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeI	CATATG	1 cut(s)	197
NlaIII	CATG	2 cut(s)	170, 316
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	120, 176
PscI	ACATGT	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	119, 175
Sau96I	GGNCC	1 cut(s)	213
SetI	ASST	2 cut(s)	123, 133
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	4 cut(s)	36, 235, 242, 301
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	17, 338
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	81, 150
TasI	AATT	4 cut(s)	36, 235, 242, 301
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	111, 260
TseI	GCWGC	2 cut(s)	118, 174
TspRI	CASTG	2 cut(s)	111, 260
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	170
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	17, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.