Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Reverse (-)

55337533 .. 55342441

Gene Structure 4909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG389200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTTCCTGTAGCCTAGGGACATCATATACTAAAGTTACAAACTTGAACTTGCGTAGAACAAGAGTTGGGATTTCACAATCTTATGGTGCAAGAACTTGGACACTGCAAAGACCGCAGCTTTACTCAGGTTTATCAATATCAAGACGGTTAGAGAAAGTGTTACATGTGCGCAGCGCTCCATCTTTAGAAATCATATCTGCTACAAATTTAGAAGATGGTTCTGAAGAGAGTGATTCTGGTTCAGCAAGCCCGCGCATTCCAAACTTTGATGAGAAGCAAATAGTGAAAGAGGGCCAAGTGATTTGCTACATCGAACAGCTAGGAGGAGAGCTTCCAATTGAGTCTGATGTGGCCGGGGAGGTCATCAAGATACTACGGGAAGATGGTGAACCTGTTGGATACGGTGATGCCCTGATTGCAGTTCTCCCCTCGTTTCCTGGGATTAAGAAGCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

153

Amino Acids

16.66

Weight (kDa)

5.5

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	96 - 140	3.8e-07	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	116, 254
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	246
AfeI	AGCGCT	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	49, 458
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	4 cut(s)	121, 322, 334, 454
AluI	AGCT	4 cut(s)	121, 322, 334, 454
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	2 cut(s)	295, 354
ApeKI	GCWGC	2 cut(s)	118, 174
ApoI	RAATTY	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	3 cut(s)	174, 179, 258
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	401, 419
AvrII	CCTAGG	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	130, 186
BccI	CCATC	3 cut(s)	190, 212, 380
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	358
BfaI	CTAG	2 cut(s)	17, 323
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	119, 175
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	120, 176
Bme1390I	CCNGG	2 cut(s)	358, 441
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	358, 441
BmsI	GCATC	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	16, 357, 440
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	16, 357, 440
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	130, 186
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	297, 356
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	297, 356
BspACI	CCGC	2 cut(s)	116, 254
BspANI	GGCC	2 cut(s)	297, 356
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	16, 357, 440
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	150, 407
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	250, 254
BstDEI	CTNAG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	174, 179, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 419
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	356, 439
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	130, 186
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	297, 356
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	250, 254
CfoI	GCGC	3 cut(s)	174, 179, 258
Cfr13I	GGNCC	1 cut(s)	295
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	9 cut(s)	5, 15, 121, 252, 297, 322, 334, 356, 454
CviKI_1	RGCY	9 cut(s)	5, 15, 121, 252, 297, 322, 334, 356, 454
DdeI	CTNAG	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	170
FaiI	YATR	5 cut(s)	28, 30, 87, 168, 197
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	119, 175
Fsp4HI	GCNGC	2 cut(s)	119, 175
FspBI	CTAG	2 cut(s)	17, 323
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	3 cut(s)	173, 178, 257
GluI	GCNGC	2 cut(s)	119, 175
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	297, 356
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	3 cut(s)	174, 179, 258
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	3 cut(s)	172, 177, 256
HinP1I	GCGC	3 cut(s)	172, 177, 256
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	2 cut(s)	236, 344
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	401, 419
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	226, 349
Hpy188III	TCNNGA	2 cut(s)	144, 370
Hpy8I	GTNNAC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	150, 407
HpyCH4V	TGCA	3 cut(s)	92, 109, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 419
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	3 cut(s)	172, 177, 256
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	8 cut(s)	22, 114, 225, 370, 408, 426, 428, 453
Lsp1109I	GCAGC	2 cut(s)	130, 186
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	17, 323
MaeIII	GTNAC	2 cut(s)	37, 162
MboII	GAAGA	3 cut(s)	227, 239, 395
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	2 cut(s)	208, 339
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	286, 320, 355, 442
MseI	TTAA	1 cut(s)	447
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	358, 441
MteI	GCGCNGCGC	1 cut(s)	175
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	115, 419
NciI	CCSGG	1 cut(s)	358
NlaIII	CATG	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	120, 176
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	119, 175
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	358, 441
SetI	ASST	7 cut(s)	123, 133, 324, 336, 366, 397, 456
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	208, 339
SsiI	CCGC	2 cut(s)	116, 254
SspMI	CTAG	2 cut(s)	17, 323
StyD4I	CCNGG	2 cut(s)	356, 439
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	150, 407
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	208, 339
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	2 cut(s)	118, 174
TspRI	CASTG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	170
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	17, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.