Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009300

Physical Location & Seq

Genomic Coordinates Reverse (-)

58937381 .. 58942867

Gene Structure 5487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTTCCTGTAGCCTAGGGACATCATATACTAAAGTTACAAACTTGAACTTGGGTAGAACAAGAGTTGGGATTTCACAATCTTATGGTGCAAGAACTTGGACACTGCAAAGACCGCAGCTTTACTCAGGTTTATCAATATCAAGACGGTTAGAGAAAGTGTTACATGTGCGCAGCGCTCCATCTTTAGAAGTCATATCTGCTACAAATTTAGAAGATGGTTCTGAAGAGAGTGATTCTGGTTCAGCAAGCCCGCGCATTCCAAACTTTGATGAGATACAGTCTATGCTTACAACAATATGCGATACAACTTCAGTTGCAGAGGTTGAGTTAAAACTCGGTGGATTTCGGTTACATGTGGTGAGGGAGTTGACTGAAGAAGGTAGCACTCCACCTCCTCCAATTCCTGCTCCTGTCAGTGCAAGTACACCTGCTGAAGCACCCGAATCAAACGGATCAGTTTCTTCACAATCTTTAGCTATCACTAGACCAGAATCTTCTTCAAGAGATATCCAAACATTATTAGATAAAGCTGCTGATGAAGGCTTGGTGTTAATTCAGTCTCCACGAGTGGGGTCATTTAGAAGATCTCGAACAATAAAGGGAAAGCGTGCTCCTCCATCATGTAAAGAGAAGCAAATAGTGAAAGAGGGCCAAGTGATTTGCTACATCGAACAGCTAGGAGGTGAGCTTCCAATTGAGGTATGTGGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

238

Amino Acids

25.59

Weight (kDa)

6.76

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52670 AT3G15690 AT3G15690 AT3G15690
fragaria_vesca	FvH4_6g30310
malus_domestica	MD09G1220700.v1.1 MD17G1204600.v1.1
prunus_persica	Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1 Prupe.3G080100_v2.0.a1
pyrus_communis	pycom1094g00160
rosa_chinensis	RchiOBHm_Chr2g0136541
rosa_laevigata	RLG00000019540
rosa_multiflora	Rmu_co8372767.1_g000001 Rmu_sc0013824.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108190
rosa_rugosa	Rorug02G0331800
rosa_samantha	Rh2AG382600 Rh2BG389200 Rh2CG369000 Rh2DG405900
rosa_wichuraiana	Rw2G031270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	439
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	116, 254
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	4 cut(s)	246, 297, 396, 456
AfaI	GTAC	1 cut(s)	427
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflIII	ACRYGT	2 cut(s)	166, 355
AgsI	TTSAA	2 cut(s)	49, 504
AluBI	AGCT	5 cut(s)	121, 479, 533, 679, 691
AluI	AGCT	5 cut(s)	121, 479, 533, 679, 691
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	463
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	3 cut(s)	118, 174, 533
ApoI	RAATTY	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	3 cut(s)	174, 179, 258
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	373, 698
AvrII	CCTAGG	1 cut(s)	16
BauI	CACGAG	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	130, 186, 520
BccI	CCATC	3 cut(s)	190, 212, 628
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	3 cut(s)	17, 486, 680
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	3 cut(s)	119, 175, 534
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	3 cut(s)	120, 176, 535
BmgT120I	GGNCC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	387, 606
BseXI	GCAGC	3 cut(s)	130, 186, 520
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	455, 587
BspACI	CCGC	2 cut(s)	116, 254
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	455, 587
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	150, 282
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	250, 254, 612
BstDEI	CTNAG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	174, 179, 258
BstKTI	GATC	2 cut(s)	458, 590
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	2 cut(s)	455, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	170, 359
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	130, 186, 520
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	654
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 424
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	250, 254, 612
CfoI	GCGC	3 cut(s)	174, 179, 258
Cfr13I	GGNCC	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	3 cut(s)	167, 356, 624
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	457, 589
DpnII	GATC	2 cut(s)	455, 587
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	511
Eco47III	AGCGCT	1 cut(s)	178
Eco57I	CTGAAG	4 cut(s)	246, 297, 396, 456
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	170, 359, 627
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	166, 355, 623
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	119, 175, 534
Fsp4HI	GCNGC	3 cut(s)	119, 175, 534
FspBI	CTAG	3 cut(s)	17, 486, 680
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	3 cut(s)	173, 178, 257
GluI	GCNGC	3 cut(s)	119, 175, 534
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	654
HhaI	GCGC	3 cut(s)	174, 179, 258
Hin1II	CATG	3 cut(s)	170, 359, 627
Hin6I	GCGC	3 cut(s)	172, 177, 256
HinP1I	GCGC	3 cut(s)	172, 177, 256
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	236, 446, 494
HphI	GGTGA	2 cut(s)	373, 698
Hpy166II	GTNNAC	2 cut(s)	372, 428
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	3 cut(s)	144, 504, 591
Hpy8I	GTNNAC	2 cut(s)	372, 428
HpyAV	CCTTC	2 cut(s)	374, 536
HpyCH4III	ACNGT	2 cut(s)	150, 282
HpyCH4V	TGCA	4 cut(s)	92, 109, 320, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	170, 359, 627
HspAI	GCGC	3 cut(s)	172, 177, 256
Kzo9I	GATC	2 cut(s)	455, 587
LmnI	GCTCC	3 cut(s)	184, 415, 619
LpnPI	CCDG	7 cut(s)	22, 114, 225, 420, 426, 444, 504
Lsp1109I	GCAGC	3 cut(s)	130, 186, 520
MaeI	CTAG	3 cut(s)	17, 486, 680
MaeIII	GTNAC	3 cut(s)	37, 162, 351
MalI	GATC	2 cut(s)	457, 589
MboI	GATC	2 cut(s)	455, 587
MboII	GAAGA	7 cut(s)	227, 239, 389, 456, 489, 492, 597
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	4 cut(s)	208, 402, 555, 696
MnlI	CCTC	8 cut(s)	316, 357, 405, 408, 627, 643, 677, 694
MseI	TTAA	2 cut(s)	332, 554
MteI	GCGCNGCGC	1 cut(s)	175
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	258
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	2 cut(s)	455, 587
NlaIII	CATG	3 cut(s)	170, 359, 627
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	2 cut(s)	170, 359
PaqCI	CACCTGC	1 cut(s)	439
PciI	ACATGT	2 cut(s)	166, 355
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	236, 446, 494
PkrI	GCNGC	3 cut(s)	120, 176, 535
PscI	ACATGT	2 cut(s)	166, 355
PspPI	GGNCC	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	332, 554
SatI	GCNGC	3 cut(s)	119, 175, 534
Sau3AI	GATC	2 cut(s)	455, 587
Sau96I	GGNCC	1 cut(s)	652
SduI	GDGCHC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	10
Sse9I	AATT	4 cut(s)	208, 402, 555, 696
SsiI	CCGC	2 cut(s)	116, 254
SspMI	CTAG	3 cut(s)	17, 486, 680
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	150, 282
TaqI	TCGA	2 cut(s)	592, 672
TasI	AATT	4 cut(s)	208, 402, 555, 696
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	236, 446, 494
Tru1I	TTAA	2 cut(s)	332, 554
Tru9I	TTAA	2 cut(s)	332, 554
TscAI	CASTG	2 cut(s)	111, 424
TseI	GCWGC	3 cut(s)	118, 174, 533
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	111, 424
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	2 cut(s)	170, 359
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 486, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.