Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Forward (+)

19664023 .. 19665631

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCTCAATCTTGAAGACTACTAAGGTTCCTATTCTTGATCTCACGAGCCAACAAGAGTTGAAACCAAACACATCCACGTGGCGTTCTGTTTCAAGAGAAGCTTGTGAAGCCTTGGAGGAATACGGCTGTTTCTTGGCCGTGTACGACGGAGTAACACAGCAGCTAGACGATTCCATCTTCGCCGCTGCTGAGGAACTGTTTGATCTACCGACGGAGACAAAGAAGAAAAACGTAAACGAGAAGCCTTACCATGGCTACGTTGGTCAAATGCCTGTGATCCCTCTTCATGAAGGCCTTGGAGTTGACTATGTTACCAACAAAGAAATTGCTCAGAGATTCACTCATCTCATGTGGCCTCAAGGAAACGATCGGTTTTGCAACACCGTGCACACTTTCTCAAACGCAGTTGCGGAATTAGACCGACTAGTGGTGAGGATGATATTTGAGAACTATGGTGTTGAGAAACACTACGAATCGCACGTCGGGTCAAAGACTTACCTACTAAAGTTCCTCAAGTACTTGGCTCCACCAGAATCTATCTCGATGCCAGCTTTTCCTCAGCACACCGATAAGACCTTTCTATCAATACTTCACCAAAATGATGTAAATGGTTTAGAGGTGAAATCAAAAGACGGTGAATGGATTTCCCTTCAACTCCCACCCAAGTCATACGTAGTCATGGCCGGTGACATCTCTATGGGTTGGAGCAATGACAGGATACGTTCTTGTGAACATAGAGTGACAATGGAAGGAGATAAGACGAGGTACACTTTAGGTCTTTTCTCGTTTCTCACAGACTTGGTTTCCATTCCTGAGGAGCTTGTGGACGACAAACACCCACTTATGTATAAGCCATTCGATAACATCGCTCTCATAAACTTCTATACAACCAAAGAAGGGCGTGAAGCAAACTCGACTCTCAAAGCATATTGTGGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.73

Weight (kDa)

5.51

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 89	2.8e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	184 - 262	3.9e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 413
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	2 cut(s)	138, 684
AcvI	CACGTG	1 cut(s)	81
AfaI	GTAC	3 cut(s)	146, 521, 770
AfiI	CCNNNNNNNGG	3 cut(s)	254, 430, 900
AgsI	TTSAA	4 cut(s)	16, 64, 96, 656
AhlI	ACTAGT	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	484
AluBI	AGCT	4 cut(s)	104, 166, 554, 823
AluI	AGCT	4 cut(s)	104, 166, 554, 823
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	5 cut(s)	3, 138, 295, 356, 684
ApaLI	GTGCAC	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	163, 188
ArsI	GACNNNNNNTTYG	2 cut(s)	468, 500
AsuHPI	GGTGA	5 cut(s)	445, 587, 634, 650, 701
AxyI	CCTNAGG	1 cut(s)	816
BaeGI	GKGCMC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	46
BbrPI	CACGTG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	393
BbvCI	CCTCAGC	2 cut(s)	192, 561
BbvI	GCAGC	2 cut(s)	175, 175
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	125, 142
BciVI	GTATCC	1 cut(s)	714
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	427
BfaI	CTAG	2 cut(s)	167, 428
BfuI	GTATCC	1 cut(s)	714
BisI	GCNGC	3 cut(s)	164, 186, 189
BlsI	GCNGC	3 cut(s)	165, 187, 190
BmcAI	AGTACT	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	484
BmiI	GGNNCC	2 cut(s)	30, 528
BmsI	GCATC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
Bpu10I	CCTNAGC	2 cut(s)	192, 561
BpuEI	CTTGAG	2 cut(s)	345, 500
BsaAI	YACGTR	2 cut(s)	81, 676
BsaJI	CCNNGG	3 cut(s)	114, 253, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 430, 900
Bse118I	RCCGGY	1 cut(s)	686
Bse21I	CCTNAGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	718
BseDI	CCNNGG	3 cut(s)	114, 253, 298
BseGI	GGATG	2 cut(s)	74, 444
BseLI	CCNNNNNNNGG	3 cut(s)	254, 430, 900
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	4 cut(s)	183, 347, 575, 807
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	175, 175
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	5 cut(s)	5, 140, 297, 358, 686
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	687
BslI	CCNNNNNNNGG	3 cut(s)	254, 430, 900
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	5 cut(s)	5, 140, 297, 358, 686
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	4 cut(s)	40, 205, 279, 370
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	186, 413
BspANI	GGCC	5 cut(s)	5, 140, 297, 358, 686
BspCNI	CTCAG	4 cut(s)	184, 346, 574, 808
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	30, 528
BspPI	GGATC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	718
BsrFI	RCCGGY	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	3 cut(s)	114, 253, 298
BssMI	GATC	4 cut(s)	40, 205, 279, 370
BssSI	CACGAG	1 cut(s)	46
BssT1I	CCWWGG	3 cut(s)	114, 253, 298
Bst2BI	CACGAG	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	201, 388, 638
Bst6I	CTCTTC	1 cut(s)	291
BstBAI	YACGTR	2 cut(s)	81, 676
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	24, 192, 333, 561, 816
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	74, 444
BstKTI	GATC	4 cut(s)	43, 208, 282, 373
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	40, 205, 279, 370
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	393
BstSNI	TACGTA	1 cut(s)	676
BstV1I	GCAGC	2 cut(s)	175, 175
BstV2I	GAAGAC	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	816
BsuI	GTATCC	1 cut(s)	714
BsuRI	GGCC	5 cut(s)	5, 140, 297, 358, 686
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	853
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	74, 444
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	145, 520, 769
CviAII	CATG	4 cut(s)	254, 290, 352, 682
CviQI	GTAC	3 cut(s)	145, 520, 769
DdeI	CTNAG	5 cut(s)	24, 192, 333, 561, 816
DpnI	GATC	4 cut(s)	42, 207, 281, 372
DpnII	GATC	4 cut(s)	40, 205, 279, 370
EaeI	YGGCCR	2 cut(s)	138, 684
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco105I	TACGTA	1 cut(s)	676
Eco130I	CCWWGG	3 cut(s)	114, 253, 298
Eco147I	AGGCCT	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	816
EcoT14I	CCWWGG	3 cut(s)	114, 253, 298
ErhI	CCWWGG	3 cut(s)	114, 253, 298
FaeI	CATG	4 cut(s)	257, 293, 355, 685
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	4 cut(s)	253, 289, 351, 681
Fnu4HI	GCNGC	3 cut(s)	164, 186, 189
FokI	GGATG	2 cut(s)	61, 451
Fsp4HI	GCNGC	3 cut(s)	164, 186, 189
FspBI	CTAG	2 cut(s)	167, 428
GluI	GCNGC	3 cut(s)	164, 186, 189
HaeIII	GGCC	5 cut(s)	5, 140, 297, 358, 686
HapII	CCGG	1 cut(s)	687
Hin1II	CATG	4 cut(s)	257, 293, 355, 685
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	5 cut(s)	173, 339, 476, 536, 919
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	5 cut(s)	445, 587, 634, 650, 701
Hpy166II	GTNNAC	7 cut(s)	145, 238, 307, 391, 734, 771, 829
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	7 cut(s)	13, 38, 46, 96, 290, 544, 815
Hpy8I	GTNNAC	7 cut(s)	145, 238, 307, 391, 734, 771, 829
Hpy99I	CGWCG	3 cut(s)	152, 217, 488
HpyAV	CCTTC	4 cut(s)	287, 662, 746, 893
HpyCH4III	ACNGT	3 cut(s)	201, 388, 638
HpyCH4IV	ACGT	6 cut(s)	80, 234, 261, 483, 675, 724
HpyCH4V	TGCA	2 cut(s)	381, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	5 cut(s)	24, 192, 333, 561, 816
HpySE526I	ACGT	6 cut(s)	80, 234, 261, 483, 675, 724
Hsp92II	CATG	4 cut(s)	257, 293, 355, 685
Kzo9I	GATC	4 cut(s)	40, 205, 279, 370
LmnI	GCTCC	3 cut(s)	532, 708, 820
LpnPI	CCDG	6 cut(s)	288, 546, 564, 700, 703, 828
Lsp1109I	GCAGC	2 cut(s)	175, 175
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	2 cut(s)	167, 428
MaeII	ACGT	6 cut(s)	80, 234, 261, 483, 675, 724
MaeIII	GTNAC	4 cut(s)	154, 313, 689, 742
MalI	GATC	4 cut(s)	42, 207, 281, 372
MboI	GATC	4 cut(s)	40, 205, 279, 370
MboII	GAAGA	4 cut(s)	28, 172, 238, 278
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	2 cut(s)	327, 416
MlyI	GAGTC	1 cut(s)	913
MmeI	TCCRAC	1 cut(s)	686
MslI	CAYNNNNRTG	3 cut(s)	79, 600, 698
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	4 cut(s)	40, 205, 279, 370
NlaIII	CATG	4 cut(s)	257, 293, 355, 685
NlaIV	GGNNCC	2 cut(s)	30, 528
NmuCI	GTSAC	2 cut(s)	689, 742
PagI	TCATGA	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PfeI	GAWTC	4 cut(s)	173, 339, 476, 536
PkrI	GCNGC	3 cut(s)	165, 187, 190
Ple19I	CGATCG	1 cut(s)	373
PleI	GAGTC	1 cut(s)	913
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	913
Ppu21I	YACGTR	2 cut(s)	81, 676
PspCI	CACGTG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	30, 528
PvuI	CGATCG	1 cut(s)	373
RsaI	GTAC	3 cut(s)	146, 521, 770
RsaNI	GTAC	3 cut(s)	145, 520, 769
RseI	CAYNNNNRTG	3 cut(s)	79, 600, 698
SatI	GCNGC	3 cut(s)	164, 186, 189
Sau3AI	GATC	4 cut(s)	40, 205, 279, 370
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	1 cut(s)	913
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	537
SmiMI	CAYNNNNRTG	3 cut(s)	79, 600, 698
SmlI	CTYRAG	2 cut(s)	360, 515
SmoI	CTYRAG	2 cut(s)	360, 515
SnaBI	TACGTA	1 cut(s)	676
SpeI	ACTAGT	1 cut(s)	427
Sse9I	AATT	2 cut(s)	327, 416
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	2 cut(s)	186, 413
SspMI	CTAG	2 cut(s)	167, 428
StuI	AGGCCT	1 cut(s)	297
StyI	CCWWGG	3 cut(s)	114, 253, 298
TaaI	ACNGT	3 cut(s)	201, 388, 638
TaiI	ACGT	6 cut(s)	83, 237, 264, 486, 678, 727
TaqI	TCGA	3 cut(s)	545, 861, 917
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	327, 416
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	173, 339, 476, 536
TseFI	GTSAC	2 cut(s)	689, 742
TseI	GCWGC	2 cut(s)	163, 188
Tsp45I	GTSAC	2 cut(s)	689, 742
TspDTI	ATGAA	2 cut(s)	278, 306
TspGWI	ACGGA	2 cut(s)	165, 230
VneI	GTGCAC	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	167, 428
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.