Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Reverse (-)

3641024 .. 3642588

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGTCTCAAACTCAGCCAGCTAAGGTTCCCATTGTAGATTTATCAAAAGAGGACTTGAAGCCTGGCACAGATGCATGGCTCTTGGCAAGCAAGGAAGTCATGTATGCCCTAGAAGAGTATGGTTGCTTTGAAGCTATTTACAATAAAGTTCCCTTGGAACTTCACAACTCAACTTTTTCTTTGCTCGAAGACCTTTTCAATCTTCCCTTGGAAACTAAGATGCAGAACACCAGTGACAGGCCTTACCACAGCTATATTGGCCATGGACAGTATTCCTTTCTTCCTCTCTACGAATCCTTGGGTGTCGATAACCCGACGACATTAGAAGGAGCTCAACGCTTCACAAGTATCATGTGGCCTAAAGGAAATGACAAGTTTCGTGAAAGTGCTCATTCCTTCTCAAAGCTGGTGGCCGAATTGGGAGAAATGGTGACAAAAATGGTGTTTGAGAAGTATGGTGTGGAGAGGCTCTATGAGTCCCACATGGCATCAACGACTTACCTCCTCAGATGCTCCAAATATAGAGCGCCTCAGCTGAATGAGACTGATATGGGATTGCTTCCTCACAAAGATAAGACCTTCTTATCCATACTTAATCAAAATGAGATTAATGGTTTGCAGATAAGAACAAAGGACGGACAATGGATTGATGTGAAACCTTCACATTCATCTTTTCTAATCATGGCAGGAGATGCATTCATGGCATGGAGTAACGACAGGTTACACTCTTGTGAACACCAAGTCGTCGCGAAAGAGAAGAAAACCAGATACTCCTTGGGATTATTCGCATTTAATAGTGGGATTCTGCAAGTACCTGAAGAGTTAGTCGATGAGAAACACCCCTTGCTGTACAGGCCTTTCGATCATATTGGTTTCCTTTTTTTCAATAGGACACCAGAAGGAATAAAATCTGAGTGTCCTATCAAAGACTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

36.01

Weight (kDa)

5.79

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 93	2.7e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 264	9.8e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	262, 414
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	2 cut(s)	816, 854
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	4 cut(s)	61, 134, 202, 889
AjnI	CCWGG	1 cut(s)	64
AleI	CACNNNNGTG	1 cut(s)	732
AluBI	AGCT	6 cut(s)	23, 137, 255, 335, 409, 538
AluI	AGCT	6 cut(s)	23, 137, 255, 335, 409, 538
Alw21I	GWGCWC	2 cut(s)	337, 394
Alw26I	GTCTC	2 cut(s)	12, 539
AoxI	GGCC	5 cut(s)	242, 262, 359, 414, 857
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	337, 394
BbvCI	CCTCAGC	1 cut(s)	534
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	12, 539
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	5 cut(s)	64, 213, 500, 503, 685
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	24, 534
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	5 cut(s)	156, 210, 265, 300, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	5 cut(s)	156, 210, 265, 300, 777
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	4 cut(s)	29, 523, 548, 906
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	752
BshFI	GGCC	5 cut(s)	244, 264, 361, 416, 859
BsiHKAI	GWGCWC	2 cut(s)	337, 394
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	12, 539
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	5 cut(s)	244, 264, 361, 416, 859
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	337, 394
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	1 cut(s)	865
Bsp19I	CCATGG	1 cut(s)	265
Bsp68I	TCGCGA	1 cut(s)	752
BspANI	GGCC	5 cut(s)	244, 264, 361, 416, 859
BspCNI	CTCAG	4 cut(s)	28, 522, 547, 907
BspFNI	CGCG	1 cut(s)	752
BspLI	GGNNCC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	5 cut(s)	156, 210, 265, 300, 777
BssMI	GATC	1 cut(s)	865
BssT1I	CCWWGG	5 cut(s)	156, 210, 265, 300, 777
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	273, 938
Bst6I	CTCTTC	2 cut(s)	111, 816
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	21, 91
BstDEI	CTNAG	6 cut(s)	15, 24, 219, 509, 534, 915
BstDSI	CCRYGG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	752
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	1 cut(s)	868
BstMAI	GTCTC	2 cut(s)	12, 539
BstMBI	GATC	1 cut(s)	865
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 695, 704, 856
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	752
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	244, 264, 361, 416, 859
BtgI	CCRYGG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	241
BtuMI	TCGCGA	1 cut(s)	752
Cac8I	GCNNGC	2 cut(s)	21, 91
CfoI	GCGC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	815, 853
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	8 cut(s)	78, 103, 266, 355, 487, 685, 703, 708
CviQI	GTAC	2 cut(s)	815, 853
DdeI	CTNAG	6 cut(s)	15, 24, 219, 509, 534, 915
DpnI	GATC	1 cut(s)	867
DpnII	GATC	1 cut(s)	865
EaeI	YGGCCR	2 cut(s)	262, 414
Eam1104I	CTCTTC	2 cut(s)	111, 816
EarI	CTCTTC	2 cut(s)	111, 816
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	5 cut(s)	156, 210, 265, 300, 777
Eco147I	AGGCCT	2 cut(s)	244, 859
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	5 cut(s)	156, 210, 265, 300, 777
EcoT22I	ATGCAT	2 cut(s)	79, 700
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	5 cut(s)	156, 210, 265, 300, 777
FaeI	CATG	8 cut(s)	81, 106, 269, 358, 490, 688, 706, 711
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	8 cut(s)	77, 102, 265, 354, 486, 684, 702, 707
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	5 cut(s)	244, 264, 361, 416, 859
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	8 cut(s)	81, 106, 269, 358, 490, 688, 706, 711
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	296, 479, 805
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	2 cut(s)	512, 916
Hpy188III	TCNNGA	2 cut(s)	383, 751
Hpy8I	GTNNAC	1 cut(s)	737
Hpy99I	CGWCG	2 cut(s)	322, 752
HpyAV	CCTTC	5 cut(s)	323, 409, 592, 672, 896
HpyCH4III	ACNGT	2 cut(s)	273, 938
HpyCH4V	TGCA	5 cut(s)	77, 226, 622, 698, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 695, 704, 856
HpyF3I	CTNAG	6 cut(s)	15, 24, 219, 509, 534, 915
Hsp92II	CATG	8 cut(s)	81, 106, 269, 358, 490, 688, 706, 711
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	865
LmnI	GCTCC	2 cut(s)	332, 521
LweI	GCATC	5 cut(s)	64, 213, 500, 503, 685
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	4 cut(s)	236, 433, 713, 723
MalI	GATC	1 cut(s)	867
MboI	GATC	1 cut(s)	865
MboII	GAAGA	6 cut(s)	128, 197, 203, 275, 772, 833
MhlI	GDGCHC	2 cut(s)	337, 394
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	1 cut(s)	419
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	46, 297, 462, 515, 518, 543, 576
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	2 cut(s)	79, 700
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	597, 612, 795
MslI	CAYNNNNRTG	1 cut(s)	732
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	538
MspR9I	CCNGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	698
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	752
MwoI	GCNNNNNNNGC	4 cut(s)	261, 695, 704, 856
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	865
NlaIII	CATG	8 cut(s)	81, 106, 269, 358, 490, 688, 706, 711
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	236, 433
NruI	TCGCGA	1 cut(s)	752
NsiI	ATGCAT	2 cut(s)	79, 700
OliI	CACNNNNGTG	1 cut(s)	732
PceI	AGGCCT	2 cut(s)	244, 859
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	296, 805
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	538
RruI	TCGCGA	1 cut(s)	752
RsaI	GTAC	2 cut(s)	816, 854
RsaNI	GTAC	2 cut(s)	815, 853
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	597, 612, 795
Sau3AI	GATC	1 cut(s)	865
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	337, 394
SfaNI	GCATC	5 cut(s)	64, 213, 500, 503, 685
SmiMI	CAYNNNNRTG	1 cut(s)	732
Sse9I	AATT	1 cut(s)	419
SseBI	AGGCCT	2 cut(s)	244, 859
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	337
StuI	AGGCCT	2 cut(s)	244, 859
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	5 cut(s)	156, 210, 265, 300, 777
TaaI	ACNGT	2 cut(s)	273, 938
TaqI	TCGA	4 cut(s)	189, 309, 831, 864
TasI	AATT	1 cut(s)	419
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	2 cut(s)	296, 805
Tru1I	TTAA	3 cut(s)	597, 612, 795
Tru9I	TTAA	3 cut(s)	597, 612, 795
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	236, 433
Tsp45I	GTSAC	2 cut(s)	236, 433
TspDTI	ATGAA	2 cut(s)	660, 691
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	2 cut(s)	257, 775
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	2 cut(s)	79, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.