Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Reverse (-)

23838986 .. 23840591

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGTCACATACTCAGCCAGCTGCTAAGGTTCCCATTGTAGATTTATCAAAGGAGAACGTGAAGCCTGGTACAGATGCATGGCTCTTGGCAAGCAAGGAAATCAAGTATGCTCTAGAAGAGTATGGCTGCTTTGAAGCTATTTACAATAAAGTTCCTTTGGAACTTCACAACTCAACTTTTTCTGTGCTCCAAGATCTTTTCAATCTTCCTTTGGAAACAAAAATGCAGAGCACCAGTGACAGGCCTTACCACAGCTATTTCGGACAATATTCCTTCCTTCCTCTCTACGAGTCCTTGGGTGTCGATAACCCAACTAAAATAGAAGGAGTTCAACGCTTCACAAGTATCATGTGGCCTGAAGGAAATGACAAGTTTTGTGAAAGTGCTCATTCCTACTCAAAGCTGGTGGCGGAATTGGATGAAATGGTGACAAAAATGGTGTTTGAGAATTATGGCGTGGAGCGGCTCTATGAGTCTCATATGGCATCAACGACTTACCTCCTTAGATGCTTCTACTATAGAGAGCCTCAGCTGGATGAGACTGATATGGGATTGCATCCTCACACAGATAAGACCTTCATATCCATACTTCATCAAGATGAGATTAATGGTTTGCAGATAAAATCAAAGGAAGGCCAATGGATTGATGTGGAACCTTCACCTTCATCTTTTATAGTCATGGCAGGCGACGCATTCATGGCATGGAGTAACGACAGGGTACGCTCTTGTGAGCACCAAGTCATCATGAAAGAGAAGAAAACCAGATACTCCATTGGATTATTCGCATTCAATGGGGTTCTGCAAGTACCTGCAGAGTTAGTCGATGAGAAACACCCATTGCTATACAAGCCTTTCGATCATATTGGTTTCCTTCTTTTTAACAAGACACCAGAGGGAATGAAATCCAAGTGTCCTATCAAAGACTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.89

Weight (kDa)

5.4

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	11 - 89	2.4e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	168 - 263	4.9e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	820
AccBSI	CCGCTC	1 cut(s)	466
AciI	CCGC	2 cut(s)	413, 466
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	3 cut(s)	73, 723, 810
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	4 cut(s)	137, 205, 335, 793
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	5 cut(s)	23, 140, 258, 406, 535
AluI	AGCT	5 cut(s)	23, 140, 258, 406, 535
Alw21I	GWGCWC	4 cut(s)	192, 236, 391, 738
Alw26I	GTCTC	2 cut(s)	483, 536
AoxI	GGCC	3 cut(s)	245, 356, 637
ApeKI	GCWGC	2 cut(s)	23, 129
AseI	ATTAAT	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	442, 654
Bbv12I	GWGCWC	4 cut(s)	192, 236, 391, 738
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	10, 116
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	483, 536
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	520, 813
BfuAI	ACCTGC	1 cut(s)	820
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	24, 130, 467
BlsI	GCNGC	3 cut(s)	25, 131, 468
Bme1390I	CCNGG	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	33, 657
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	4 cut(s)	67, 497, 500, 568
Bpu10I	CCTNAGC	2 cut(s)	27, 531
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	839
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	427, 544, 559
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	29, 545
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	10, 116
BshFI	GGCC	3 cut(s)	247, 358, 639
BsiHKAI	GWGCWC	4 cut(s)	192, 236, 391, 738
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	483, 536
BsmI	GAATGC	2 cut(s)	695, 788
BsnI	GGCC	3 cut(s)	247, 358, 639
Bsp1286I	GDGCHC	4 cut(s)	192, 236, 391, 738
Bsp143I	GATC	2 cut(s)	196, 859
BspACI	CCGC	2 cut(s)	413, 466
BspANI	GGCC	3 cut(s)	247, 358, 639
BspCNI	CTCAG	2 cut(s)	28, 544
BspHI	TCATGA	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	33, 657
BspMAI	CTGCAG	1 cut(s)	817
BspMI	ACCTGC	1 cut(s)	820
BsrBI	CCGCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	839
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	196, 859
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	932
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	21, 94, 688
BstDEI	CTNAG	4 cut(s)	15, 27, 506, 531
BstF5I	GGATG	3 cut(s)	427, 544, 559
BstKTI	GATC	2 cut(s)	199, 862
BstMAI	GTCTC	2 cut(s)	483, 536
BstMBI	GATC	2 cut(s)	196, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	692, 701, 850
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	520, 813
BstV1I	GCAGC	2 cut(s)	10, 116
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	247, 358, 639
BtsCI	GGATG	3 cut(s)	427, 544, 559
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	3 cut(s)	21, 94, 688
CciI	TCATGA	1 cut(s)	747
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	3 cut(s)	72, 722, 809
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	6 cut(s)	81, 352, 682, 700, 705, 748
CviQI	GTAC	3 cut(s)	72, 722, 809
DdeI	CTNAG	4 cut(s)	15, 27, 506, 531
DpnI	GATC	2 cut(s)	198, 861
DpnII	GATC	2 cut(s)	196, 859
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	6 cut(s)	84, 355, 685, 703, 708, 751
FatI	CATG	6 cut(s)	80, 351, 681, 699, 704, 747
FauNDI	CATATG	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	24, 130, 467
FokI	GGATG	3 cut(s)	434, 546, 551
Fsp4HI	GCNGC	3 cut(s)	24, 130, 467
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	24, 130, 467
HaeIII	GGCC	3 cut(s)	247, 358, 639
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	6 cut(s)	84, 355, 685, 703, 708, 751
HinfI	GANTC	2 cut(s)	293, 476
HphI	GGTGA	2 cut(s)	442, 654
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	116, 599, 748
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	9 cut(s)	286, 290, 320, 356, 589, 629, 669, 675, 884
HpyCH4III	ACNGT	1 cut(s)	932
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	80, 229, 559, 619, 805, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	692, 701, 850
HpyF3I	CTNAG	4 cut(s)	15, 27, 506, 531
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	84, 355, 685, 703, 708, 751
Kzo9I	GATC	2 cut(s)	196, 859
LmnI	GCTCC	2 cut(s)	195, 463
Lsp1109I	GCAGC	2 cut(s)	10, 116
LweI	GCATC	4 cut(s)	67, 497, 500, 568
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	6, 239, 430, 710
MalI	GATC	2 cut(s)	198, 861
MbiI	CCGCTC	1 cut(s)	466
MboI	GATC	2 cut(s)	196, 859
MboII	GAAGA	3 cut(s)	131, 200, 769
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	4 cut(s)	192, 236, 391, 738
MluCI	AATT	2 cut(s)	416, 451
MlyI	GAGTC	2 cut(s)	302, 485
MnlI	CCTC	5 cut(s)	294, 512, 540, 573, 889
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	609, 882
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	2 cut(s)	23, 535
MspR9I	CCNGG	1 cut(s)	69
Mva1269I	GAATGC	2 cut(s)	695, 788
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	692, 701, 850
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	2 cut(s)	196, 859
NlaIII	CATG	6 cut(s)	84, 355, 685, 703, 708, 751
NlaIV	GGNNCC	2 cut(s)	33, 657
NmuCI	GTSAC	3 cut(s)	6, 239, 430
NsiI	ATGCAT	1 cut(s)	82
PagI	TCATGA	1 cut(s)	747
PceI	AGGCCT	1 cut(s)	247
PctI	GAATGC	2 cut(s)	695, 788
PdmI	GAANNNNTTC	1 cut(s)	330
PkrI	GCNGC	3 cut(s)	25, 131, 468
PleI	GAGTC	2 cut(s)	301, 484
PpsI	GAGTC	2 cut(s)	301, 484
PshBI	ATTAAT	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	33, 657
PstI	CTGCAG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	23, 535
RsaI	GTAC	3 cut(s)	73, 723, 810
RsaNI	GTAC	3 cut(s)	72, 722, 809
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	609, 882
SatI	GCNGC	3 cut(s)	24, 130, 467
Sau3AI	GATC	2 cut(s)	196, 859
SchI	GAGTC	2 cut(s)	302, 485
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	4 cut(s)	192, 236, 391, 738
SfaNI	GCATC	4 cut(s)	67, 497, 500, 568
SfcI	CTRYAG	2 cut(s)	520, 813
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	2 cut(s)	416, 451
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	413, 466
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	932
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	306, 825, 858
TasI	AATT	2 cut(s)	416, 451
TauI	GCSGC	1 cut(s)	469
Tru1I	TTAA	2 cut(s)	609, 882
Tru9I	TTAA	2 cut(s)	609, 882
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	3 cut(s)	6, 239, 430
TseI	GCWGC	2 cut(s)	23, 129
Tsp45I	GTSAC	3 cut(s)	6, 239, 430
TspDTI	ATGAA	7 cut(s)	438, 571, 584, 657, 688, 764, 917
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	609
XbaI	TCTAGA	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.