Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Forward (+)

85439866 .. 85440905

Gene Structure 1040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG553500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTGACAAAAATGGTGTTTGAGAATTATGGTGTGGAGAGGCTCTATGAGTCTCACATGGCATCAACGACTTACCTCCTCAGATGCTCCAAATATAGAGCGCCTCAGCTGAATGAAACTGATATGGGATTGCTTCCTCACAAAGATAAGACCTTCTTATCTATACTTAATCAAAATGAGACAAATGGTTTGCAGATAAGAACAAAGGACGGCCAATGGATTGATGTGAAACCTTCACCTTCATCTTTTCTAGTCATGGCAGGAGACGCATTCATGGCATGGAGTAACGACAGGATACACTCTTGTGAACACCAAGTTGTCACGAAAGAGAAGAAAACCAGATACTCCTTGGGATTATTCGCATTTAATAGTGGGATCCTGCAAGTACCTGAAGAGTTAGTCGATGAAAAACACCCCTTGCTGTACAGGCCTTTCGATCATATTGGTTTCCTTTTTTTTAATAAGACACCAGAAGGAATGAAATCTGAGTGTCCTATCAAAGACTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

172

Amino Acids

19.82

Weight (kDa)

6.59

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	29 - 121	2.5e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	370, 383
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	387, 425
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	3 cut(s)	57, 173, 258
AlwI	GGATC	2 cut(s)	370, 383
AoxI	GGCC	2 cut(s)	211, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspLEI	GCGC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	16, 228
BamHI	GGATCC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	57, 173, 258
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	377
BmsI	GCATC	2 cut(s)	71, 74
Bpu10I	CCTNAGC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	94, 119, 477
BseRI	GAGGAG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	213, 430
BsmAI	GTCTC	3 cut(s)	57, 173, 258
BsmBI	CGTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	213, 430
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	375, 436
BspANI	GGCC	2 cut(s)	213, 430
BspCNI	CTCAG	3 cut(s)	93, 118, 478
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	370, 383
BsrGI	TGTACA	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	375, 436
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	80, 105, 486
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	378, 439
BstMAI	GTCTC	3 cut(s)	57, 173, 258
BstMBI	GATC	2 cut(s)	375, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 427
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	213, 430
CfoI	GCGC	1 cut(s)	103
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	386, 424
CviAII	CATG	4 cut(s)	58, 256, 274, 279
CviJI	RGCY	4 cut(s)	43, 109, 213, 430
CviKI_1	RGCY	4 cut(s)	43, 109, 213, 430
CviQI	GTAC	2 cut(s)	386, 424
DdeI	CTNAG	3 cut(s)	80, 105, 486
DpnI	GATC	2 cut(s)	377, 438
DpnII	GATC	2 cut(s)	375, 436
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	4 cut(s)	61, 259, 277, 282
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	4 cut(s)	57, 255, 273, 278
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	213, 430
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	4 cut(s)	61, 259, 277, 282
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	2 cut(s)	16, 228
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	83, 487
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	4 cut(s)	163, 243, 249, 467
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	2 cut(s)	193, 382
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 427
HpyF3I	CTNAG	3 cut(s)	80, 105, 486
Hsp92II	CATG	4 cut(s)	61, 259, 277, 282
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	375, 436
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	246, 277, 352, 392, 402, 412, 483
LweI	GCATC	2 cut(s)	71, 74
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	3 cut(s)	4, 284, 319
MalI	GATC	2 cut(s)	377, 438
MboI	GATC	2 cut(s)	375, 436
MboII	GAAGA	2 cut(s)	343, 404
MflI	RGATCY	1 cut(s)	375
MluCI	AATT	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	5 cut(s)	33, 86, 89, 114, 147
MseI	TTAA	3 cut(s)	168, 366, 459
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 427
NdeII	GATC	2 cut(s)	375, 436
NlaIII	CATG	4 cut(s)	61, 259, 277, 282
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	4, 319
OliI	CACNNNNGTG	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	269
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	387, 425
RsaNI	GTAC	2 cut(s)	386, 424
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	168, 366, 459
Sau3AI	GATC	2 cut(s)	375, 436
SchI	GAGTC	1 cut(s)	59
SetI	ASST	6 cut(s)	78, 111, 155, 235, 241, 391
SfaNI	GCATC	2 cut(s)	71, 74
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	402, 435
TasI	AATT	1 cut(s)	25
TatI	WGTACW	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	168, 366, 459
Tru9I	TTAA	3 cut(s)	168, 366, 459
TseFI	GTSAC	2 cut(s)	4, 319
Tsp45I	GTSAC	2 cut(s)	4, 319
TspDTI	ATGAA	5 cut(s)	129, 231, 262, 420, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.