Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Reverse (-)

31342001 .. 31343554

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGTCACAAACTCAGCCAGCTAAGGTTCCCATTGTAGATTTATCAAAAGAGAACTTGAAGCCTGGTACGGATGCATGGCTCTTGGCAAGCAAGGAAGTCAAGTATGGTCTAGAAGAGTATGGCTGCTTTGAAGCTATTTACAATAAAGTTCCTCTGGAACTTCACAACTCGACTTTTTCTTTGCTCGAAGACCTTTTCAATCTTCCCTTGGAAATTAAGATGCAGAACACCAGTGACAGGCCTTACCACAGCTATTTCGGACAATATTCCTTCCTTCCTCTCTACGAATCCCTGGGTGTCGATAACCCGACGACATTAGAGGGGGCTCAACGCTTCACAAGTATCATGTGGCCTGAAGGAAATGACAAGTTTCGTGAAAGTGCTCATTCCTTCTCAAAGCTGGTGGCAGAATTGGATGAAATGGTGACAAAAATGGTGTTTGAGAATTATGGTGTGGAGAGGCTCTATGAGCCTCACATGGCATCAACGACTTACCTTCTTAGATGCTTCAAATATAGAGCGCCTCAGCTGAATGAGACTGATATGGGATTGCATCCTCACAAAGATAAGACCTTCATATCCATACTTCATCAAAATGAGATTACTGGTTTGCAGATAAAAACAAAGGACGGCCAATGGATTGATGTGGAACCATCACCTTCATCTTTTCTAGTCATGGCAGGAGACGCATTCATGGCATGGAGCAACGACAGGGTACACTCTTGTGATCACCAAGTCATCATGAAAGAGAAGAAAACCAGATACTCCATGGGATTATTCGCATTTAATAGTGGGATTCTGCAAGTACCTGAAGAGTTAGTCGATGAGAAACATCCCTTACTGTACAGGCCTTTCGATCATTTTGGTTTCCTTCTCTTTAATAAGACACCAGAAGGAATGAAATCTGAGTGTCCTATCAAAGACTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

313

Amino Acids

35.97

Weight (kDa)

5.4

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 88	4e-08	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 262	4.4e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	634
AcuI	CTGAAG	2 cut(s)	378, 834
AfaI	GTAC	4 cut(s)	70, 720, 810, 848
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	4 cut(s)	61, 134, 202, 514
AjnI	CCWGG	2 cut(s)	64, 294
AleI	CACNNNNGTG	1 cut(s)	726
AluBI	AGCT	5 cut(s)	23, 137, 255, 403, 532
AluI	AGCT	5 cut(s)	23, 137, 255, 403, 532
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	533, 681
AoxI	GGCC	4 cut(s)	242, 353, 634, 851
ApeKI	GCWGC	1 cut(s)	126
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	1 cut(s)	526
AsuHPI	GGTGA	3 cut(s)	439, 651, 725
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	1 cut(s)	649
BciT130I	CCWGG	2 cut(s)	66, 296
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	533, 681
BfaI	CTAG	2 cut(s)	113, 674
BfoI	RGCGCY	1 cut(s)	527
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	66, 296
BmiI	GGNNCC	2 cut(s)	30, 654
BmrFI	CCNGG	2 cut(s)	66, 296
BmsI	GCATC	5 cut(s)	64, 213, 494, 497, 565
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	24, 528
BsaJI	CCNNGG	4 cut(s)	210, 294, 295, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	234, 613
BseBI	CCWGG	2 cut(s)	66, 296
BseDI	CCNNGG	4 cut(s)	210, 294, 295, 771
BseGI	GGATG	4 cut(s)	79, 424, 556, 835
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	29, 542, 900
BseNI	ACTGG	2 cut(s)	234, 613
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	4 cut(s)	244, 355, 636, 853
BsiHKAI	GWGCWC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	533, 681
BsmBI	CGTCTC	1 cut(s)	681
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	4 cut(s)	244, 355, 636, 853
Bsp1286I	GDGCHC	2 cut(s)	331, 388
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	2 cut(s)	730, 859
Bsp19I	CCATGG	1 cut(s)	771
BspANI	GGCC	4 cut(s)	244, 355, 636, 853
BspCNI	CTCAG	3 cut(s)	28, 541, 901
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	30, 654
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	2 cut(s)	234, 613
BssECI	CCNNGG	4 cut(s)	210, 294, 295, 771
BssMI	GATC	2 cut(s)	730, 859
BssT1I	CCWWGG	2 cut(s)	210, 771
Bst2UI	CCWGG	2 cut(s)	66, 296
Bst4CI	ACNGT	2 cut(s)	846, 932
Bst6I	CTCTTC	2 cut(s)	111, 810
BstAUI	TGTACA	1 cut(s)	846
BstC8I	GCNNGC	2 cut(s)	21, 91
BstDEI	CTNAG	5 cut(s)	15, 24, 503, 528, 909
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	4 cut(s)	79, 424, 556, 835
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	2 cut(s)	733, 862
BstMAI	GTCTC	2 cut(s)	533, 681
BstMBI	GATC	2 cut(s)	730, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 689, 698
BstNI	CCWGG	2 cut(s)	66, 296
BstSCI	CCNGG	2 cut(s)	64, 294
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	4 cut(s)	244, 355, 636, 853
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	4 cut(s)	79, 424, 556, 835
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	21, 91
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	526
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	4 cut(s)	69, 719, 809, 847
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	8 cut(s)	78, 349, 481, 679, 697, 702, 745, 772
CviQI	GTAC	4 cut(s)	69, 719, 809, 847
DdeI	CTNAG	5 cut(s)	15, 24, 503, 528, 909
DpnI	GATC	2 cut(s)	732, 861
DpnII	GATC	2 cut(s)	730, 859
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	111, 810
EarI	CTCTTC	2 cut(s)	111, 810
Eco130I	CCWWGG	2 cut(s)	210, 771
Eco147I	AGGCCT	2 cut(s)	244, 853
Eco24I	GRGCYC	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	378, 834
EcoRII	CCWGG	2 cut(s)	64, 294
EcoT14I	CCWWGG	2 cut(s)	210, 771
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	210, 771
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	8 cut(s)	81, 352, 484, 682, 700, 705, 748, 775
FatI	CATG	8 cut(s)	77, 348, 480, 678, 696, 701, 744, 771
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	4 cut(s)	86, 431, 543, 822
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	113, 674
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	4 cut(s)	244, 355, 636, 853
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	8 cut(s)	81, 352, 484, 682, 700, 705, 748, 775
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	2 cut(s)	290, 799
HphI	GGTGA	3 cut(s)	439, 651, 725
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	2 cut(s)	263, 910
Hpy188III	TCNNGA	4 cut(s)	113, 158, 377, 745
Hpy8I	GTNNAC	1 cut(s)	721
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	9 cut(s)	283, 287, 353, 403, 509, 586, 672, 884, 890
HpyCH4III	ACNGT	2 cut(s)	846, 932
HpyCH4V	TGCA	5 cut(s)	77, 226, 556, 616, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 689, 698
HpyF3I	CTNAG	5 cut(s)	15, 24, 503, 528, 909
Hsp92II	CATG	8 cut(s)	81, 352, 484, 682, 700, 705, 748, 775
HspAI	GCGC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	2 cut(s)	730, 859
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	5 cut(s)	64, 213, 494, 497, 565
MaeI	CTAG	2 cut(s)	113, 674
MaeIII	GTNAC	3 cut(s)	6, 236, 427
MalI	GATC	2 cut(s)	732, 861
MboI	GATC	2 cut(s)	730, 859
MboII	GAAGA	5 cut(s)	128, 197, 203, 766, 827
MhlI	GDGCHC	2 cut(s)	331, 388
MluCI	AATT	3 cut(s)	216, 413, 448
MnlI	CCTC	7 cut(s)	165, 291, 316, 456, 486, 537, 570
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	3 cut(s)	219, 789, 882
MslI	CAYNNNNRTG	2 cut(s)	597, 726
MspA1I	CMGCKG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	66, 296
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	2 cut(s)	66, 296
MwoI	GCNNNNNNNGC	3 cut(s)	472, 689, 698
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	2 cut(s)	730, 859
NlaIII	CATG	8 cut(s)	81, 352, 484, 682, 700, 705, 748, 775
NlaIV	GGNNCC	2 cut(s)	30, 654
NmuCI	GTSAC	3 cut(s)	6, 236, 427
NsiI	ATGCAT	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	726
PagI	TCATGA	1 cut(s)	744
PasI	CCCWGGG	1 cut(s)	295
PceI	AGGCCT	2 cut(s)	244, 853
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	290, 799
PkrI	GCNGC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	64, 294
PspGI	CCWGG	2 cut(s)	64, 294
PspN4I	GGNNCC	2 cut(s)	30, 654
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	4 cut(s)	70, 720, 810, 848
RsaNI	GTAC	4 cut(s)	69, 719, 809, 847
RseI	CAYNNNNRTG	2 cut(s)	597, 726
SaqAI	TTAA	3 cut(s)	219, 789, 882
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	730, 859
ScrFI	CCNGG	2 cut(s)	66, 296
SduI	GDGCHC	2 cut(s)	331, 388
SfaNI	GCATC	5 cut(s)	64, 213, 494, 497, 565
SmiMI	CAYNNNNRTG	2 cut(s)	597, 726
Sse9I	AATT	3 cut(s)	216, 413, 448
SseBI	AGGCCT	2 cut(s)	244, 853
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	2 cut(s)	113, 674
StuI	AGGCCT	2 cut(s)	244, 853
StyD4I	CCNGG	2 cut(s)	64, 294
StyI	CCWWGG	2 cut(s)	210, 771
TaaI	ACNGT	2 cut(s)	846, 932
TaqI	TCGA	5 cut(s)	173, 189, 303, 825, 858
TasI	AATT	3 cut(s)	216, 413, 448
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	2 cut(s)	290, 799
Tru1I	TTAA	3 cut(s)	219, 789, 882
Tru9I	TTAA	3 cut(s)	219, 789, 882
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	6, 236, 427
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	3 cut(s)	6, 236, 427
TspDTI	ATGAA	7 cut(s)	435, 568, 581, 654, 685, 761, 917
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XspI	CTAG	2 cut(s)	113, 674
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.