Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Reverse (-)

5603630 .. 5604997

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTTCAGAAACTCAGCCTAAGCTTCCTGTTATAGATTTATCAAATGAAAACTTGAAGCCTGGAACAGAGGCATGGGTCTTGGCAAGCAAGCACGTCAAGTATGCACTAGAAGAGTATGGCTGCTTTGAAGCTGTTTTCCATAAAGTTCCTTTGCAGCTCCACAACTCCATCTTTTCTGTGGTTGAAGATCTATTTGATCTTCCCATAGAAACTAAAAGGCAGCAAACCAGTGAGAGGCCTTACCACAGCTACTTTGGCCAATATTCATTCCTTCCTCTCTATGAATCCTTGGGAGTCGATAATCCAACAACTGTTGAAGGAGCAAAAGGCTTCACAAAAATTATGTGGCCTGCTGGAAATGACCATTTTTGTGAAAGTGCTCAATCCTTCTCAAAGCTGGTGGCAGAGTTGGATCAAATGGTGACAAGAATGGTGTTTGATATTTATGGTGTGGAGAGGCTTTATGATTCTCACATGGCATCAACCACTTACCTTCTTAGATGCTTTAAATATAGAGAACAGAAGGAGAATGAAACCAATGTGGGGCTGCGTCCTCACAAAGACAAGACCTTCACATCCATACTTCATCAAAGTCAGGTGCATGGTTTGCAGGTTAGATCAAAGGATGGTCAGTGGATCGAGGCAGAGCCTTCACCTTCATCTTTTCTAGTCATGGCAGGCGATGCATTCATGGCATGGAGCAATGACAGAGTACGCTCTTGTGACCACCAAGTCATCATGAAAGAGAACAAAACCAGATATTCCGTGGGACTATTCTCTTTCAACAGCGGGATTCTACAAGTACCTGAAGAGCTAACGGATGATCAACATCCCTTGCTGTATAAGCCATTTGATCATTTCAGTTTCCTTCGCTTCGATCAAACACCAGAGGCAAAGAAATCAGAGTGTCCTATCAAAGCCTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

313

Amino Acids

35.79

Weight (kDa)

5.75

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	604
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	2 cut(s)	423, 647
AcoI	YGGCCR	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	2 cut(s)	717, 807
AfiI	CCNNNNNNNGG	2 cut(s)	237, 546
AgsI	TTSAA	5 cut(s)	58, 131, 188, 320, 787
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	6 cut(s)	25, 134, 160, 252, 400, 817
AluI	AGCT	6 cut(s)	25, 134, 160, 252, 400, 817
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	423, 647
AoxI	GGCC	3 cut(s)	239, 259, 350
ApeKI	GCWGC	4 cut(s)	123, 157, 223, 550
AsuHPI	GGTGA	2 cut(s)	436, 648
BalI	TGGCCA	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	4 cut(s)	110, 169, 235, 537
BccI	CCATC	2 cut(s)	179, 623
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	2 cut(s)	826, 856
BfaI	CTAG	2 cut(s)	110, 671
BfuAI	ACCTGC	1 cut(s)	604
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	4 cut(s)	124, 158, 224, 551
BlsI	GCNGC	4 cut(s)	125, 159, 225, 552
Bme1390I	CCNGG	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	491, 494, 676
Bpu10I	CCTNAGC	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	831
BsaJI	CCNNGG	2 cut(s)	291, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 546
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	712
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	291, 768
BseGI	GGATG	4 cut(s)	578, 634, 829, 832
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	237, 546
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	110, 169, 235, 537
BshFI	GGCC	3 cut(s)	241, 261, 352
BsiHKAI	GWGCWC	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	237, 546
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	241, 261, 352
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	3 cut(s)	241, 261, 352
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	423, 647
BspQI	GCTCTTC	1 cut(s)	807
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	291, 768
BssMI	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	316, 929
Bst6I	CTCTTC	2 cut(s)	108, 807
BstAPI	GCANNNNNTGC	2 cut(s)	610, 686
BstC8I	GCNNGC	4 cut(s)	88, 92, 354, 682
BstDEI	CTNAG	3 cut(s)	15, 21, 500
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	4 cut(s)	578, 634, 829, 832
BstKTI	GATC	8 cut(s)	193, 202, 418, 623, 642, 829, 859, 883
BstMBI	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 610, 686, 695, 847
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	4 cut(s)	110, 169, 235, 537
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	241, 261, 352
BtgI	CCRYGG	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	699
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	578, 634, 829, 832
BtsIMutI	CAGTG	2 cut(s)	238, 641
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	4 cut(s)	88, 92, 354, 682
CciI	TCATGA	1 cut(s)	741
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	716, 806
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	7 cut(s)	75, 478, 605, 676, 694, 699, 742
CviQI	GTAC	2 cut(s)	716, 806
DdeI	CTNAG	3 cut(s)	15, 21, 500
DpnI	GATC	8 cut(s)	192, 201, 417, 622, 641, 828, 858, 882
DpnII	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
DraI	TTTAAA	1 cut(s)	511
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	108, 807
EarI	CTCTTC	2 cut(s)	108, 807
Eco130I	CCWWGG	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	831
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	7 cut(s)	78, 481, 608, 679, 697, 702, 745
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	7 cut(s)	74, 477, 604, 675, 693, 698, 741
FauI	CCCGC	1 cut(s)	785
FbaI	TGATCA	2 cut(s)	826, 856
Fnu4HI	GCNGC	4 cut(s)	124, 158, 224, 551
FokI	GGATG	4 cut(s)	565, 641, 819, 836
Fsp4HI	GCNGC	4 cut(s)	124, 158, 224, 551
FspBI	CTAG	2 cut(s)	110, 671
GluI	GCNGC	4 cut(s)	124, 158, 224, 551
HaeIII	GGCC	3 cut(s)	241, 261, 352
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	7 cut(s)	78, 481, 608, 679, 697, 702, 745
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	4 cut(s)	287, 297, 470, 796
HphI	GGTGA	2 cut(s)	436, 648
Hpy188I	TCNGA	2 cut(s)	10, 907
Hpy188III	TCNNGA	1 cut(s)	742
HpyAV	CCTTC	9 cut(s)	284, 314, 400, 506, 520, 583, 663, 669, 881
HpyCH4III	ACNGT	2 cut(s)	316, 929
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	107, 157, 604, 613, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 610, 686, 695, 847
HpyF3I	CTNAG	3 cut(s)	15, 21, 500
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	7 cut(s)	78, 481, 608, 679, 697, 702, 745
Ksp22I	TGATCA	2 cut(s)	826, 856
Kzo9I	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	3 cut(s)	165, 323, 702
Lsp1109I	GCAGC	4 cut(s)	110, 169, 235, 537
LweI	GCATC	3 cut(s)	491, 494, 676
MaeI	CTAG	2 cut(s)	110, 671
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	424, 725
MalI	GATC	8 cut(s)	192, 201, 417, 622, 641, 828, 858, 882
MboI	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
MboII	GAAGA	4 cut(s)	125, 194, 200, 824
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	332, 393
MnlI	CCTC	7 cut(s)	64, 231, 288, 453, 567, 637, 886
Mox20I	TGGCCA	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	691
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	792
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	5 cut(s)	258, 610, 686, 695, 847
NdeII	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
NlaIII	CATG	7 cut(s)	78, 481, 608, 679, 697, 702, 745
NmuCI	GTSAC	2 cut(s)	424, 725
NsiI	ATGCAT	1 cut(s)	691
PagI	TCATGA	1 cut(s)	741
PceI	AGGCCT	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	807
PctI	GAATGC	1 cut(s)	689
PfeI	GAWTC	3 cut(s)	287, 470, 796
PkrI	GCNGC	4 cut(s)	125, 159, 225, 552
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	717, 807
RsaNI	GTAC	2 cut(s)	716, 806
RseI	CAYNNNNRTG	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	4 cut(s)	124, 158, 224, 551
Sau3AI	GATC	8 cut(s)	190, 199, 415, 620, 639, 826, 856, 880
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	3 cut(s)	491, 494, 676
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	1 cut(s)	342
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	792
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	2 cut(s)	110, 671
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	316, 929
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	300, 642, 879
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	287, 470, 796
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	238, 641
TseFI	GTSAC	2 cut(s)	424, 725
TseI	GCWGC	4 cut(s)	123, 157, 223, 550
Tsp45I	GTSAC	2 cut(s)	424, 725
TspDTI	ATGAA	8 cut(s)	63, 258, 300, 549, 578, 651, 682, 758
TspGWI	ACGGA	2 cut(s)	757, 836
TspRI	CASTG	2 cut(s)	238, 641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	178, 254, 766
XspI	CTAG	2 cut(s)	110, 671
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.