Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Reverse (-)

24085059 .. 24085794

Gene Structure 736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1199500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGACTCTCACATGGAATCACTACATATACCTGCTTAGATGCTTTAAGTACAAAACACAAGCAGCGAATGAAGCCAATGTGGGACTGCATCCTCACACAGAAGATCAGGTGAATGGTTTGCAGATTGGAACAAAGGATGGTCAGTGGATTGATGTGAACCCTTCACCTTCATCTTTTCTCATCTTGGCAGGTGATGCGTTCATGGCATGGAGCAATGACAGAGTACCCTCTTGTGATCATCAAGTCACCATGAAAGACTACAAAACCAGATACTCCCTAGGACAGTTCGCATTCAAAAGTGGGATTATACAAGTACCTGAAGAGCTAATTGATGAGAAACATCCCTTATTCTATAAGCCATTTGATCATTTCAGTTTCCTTAACTTCGATCGAACACCAGAGGCAAGGAAATTGAAGTGTTCTATCAAAGCCTACTGTGGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

149

Amino Acids

17.05

Weight (kDa)

7.0

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	20 - 96	1.1e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	2 cut(s)	39, 179
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	50, 225, 315
AgsI	TTSAA	2 cut(s)	295, 415
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	62
AspA2I	CCTAGG	1 cut(s)	277
AsuHPI	GGTGA	4 cut(s)	121, 156, 203, 238
AvrII	CCTAGG	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	131
BclI	TGATCA	2 cut(s)	235, 364
BfaI	CTAG	1 cut(s)	278
BfuAI	ACCTGC	2 cut(s)	39, 179
BisI	GCNGC	1 cut(s)	63
BlnI	CCTAGG	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	64
BmsI	GCATC	3 cut(s)	29, 97, 184
BsaJI	CCNNGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	3 cut(s)	88, 142, 340
BseMI	GCAATG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	103, 235, 364, 388
BspMI	ACCTGC	2 cut(s)	39, 179
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	4 cut(s)	103, 235, 364, 388
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	285, 437
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	88, 142, 340
BstKTI	GATC	4 cut(s)	106, 238, 367, 391
BstMBI	GATC	4 cut(s)	103, 235, 364, 388
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 194, 203
BstV1I	GCAGC	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	88, 142, 340
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	2 cut(s)	39, 179
Csp6I	GTAC	3 cut(s)	49, 224, 314
CviAII	CATG	4 cut(s)	12, 202, 207, 250
CviJI	RGCY	4 cut(s)	74, 325, 358, 431
CviKI_1	RGCY	4 cut(s)	74, 325, 358, 431
CviQI	GTAC	3 cut(s)	49, 224, 314
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	4 cut(s)	105, 237, 366, 390
DpnII	GATC	4 cut(s)	103, 235, 364, 388
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	4 cut(s)	15, 205, 210, 253
FaiI	YATR	8 cut(s)	13, 26, 28, 203, 208, 251, 308, 354
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	11, 201, 206, 249
FbaI	TGATCA	2 cut(s)	235, 364
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	3 cut(s)	75, 149, 327
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	15, 205, 210, 253
HinfI	GANTC	2 cut(s)	4, 16
HphI	GGTGA	4 cut(s)	121, 156, 203, 238
Hpy166II	GTNNAC	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	171, 177
HpyCH4III	ACNGT	2 cut(s)	285, 437
HpyCH4V	TGCA	2 cut(s)	88, 121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 194, 203
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	15, 205, 210, 253
Ksp22I	TGATCA	2 cut(s)	235, 364
Kzo9I	GATC	4 cut(s)	103, 235, 364, 388
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	6 cut(s)	44, 92, 174, 280, 330, 411
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	3 cut(s)	29, 97, 184
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	105, 237, 366, 390
MboI	GATC	4 cut(s)	103, 235, 364, 388
MboII	GAAGA	2 cut(s)	113, 332
MluCI	AATT	2 cut(s)	327, 410
MnlI	CCTC	3 cut(s)	102, 238, 394
MseI	TTAA	2 cut(s)	45, 381
Mva1269I	GAATGC	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	71, 194, 203
NdeII	GATC	4 cut(s)	103, 235, 364, 388
NlaIII	CATG	4 cut(s)	15, 205, 210, 253
NmuCI	GTSAC	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	64
Ple19I	CGATCG	1 cut(s)	391
PvuI	CGATCG	1 cut(s)	391
RsaI	GTAC	3 cut(s)	50, 225, 315
RsaNI	GTAC	3 cut(s)	49, 224, 314
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	45, 381
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	103, 235, 364, 388
SetI	ASST	6 cut(s)	33, 111, 169, 193, 319, 327
SfaNI	GCATC	3 cut(s)	29, 97, 184
Sse9I	AATT	2 cut(s)	327, 410
SspMI	CTAG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	285, 437
TaqI	TCGA	2 cut(s)	387, 391
TasI	AATT	2 cut(s)	327, 410
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	45, 381
Tru9I	TTAA	2 cut(s)	45, 381
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	84, 159, 190, 266
TspRI	CASTG	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.