AT1G52870

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012834
Physical Location & Seq
Forward (+)
19685545 .. 19688028
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52870.1

Sequence Viewer

Length: 921 bp
ATGGCTGCTGCTTCACTCCACACTTCAATCTCACCACGTAGCTTCCTTCCTCTCTCCAAACCATCTCTAAAACCTCACCGTTCCCAAATTCTACTGAGAAACAAACAGAGGAATTGCGTTTCGTGCGCATTGATCCGTGACGAAATCGACCTGATTCCGGTTCAGAGCCGAGATCGGACCGACCATGAGGAAGGTTCGGTGGTAGTGATGAGCACTGAGACGGCGGTTGATGGTAATGAATCGGTTGTTGTAGGTTTTAGTGCTGCGACGAGTGAAGGTCAGCTTTCGTTAGAAGGGTTTCCTTCTTCTTCTTCTTCGGGAGCTGATTTAGGAGATGAAAAGAGAAGAGAGAACGAAGAAATGGAGAAGATGATCGATCGAACCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCTATTACCAAATTGCTTACCATCGATCATGATTATTGGCATGGATGGACTCTGTTTGAGATACTAAGATATGCTCCTCAACATAACTGGATTGCTTACGAAGAAGCGCTAAAGCAAAACCCGGTTCTAGCAAAAATGGTCATTAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCAAACCGTTGTTTGAAATTGATAGAGCAAGAACATTGAGATCAGGACTAGTAGGTTTCACTCTCCATGGCTCGTTATCGCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCGTTTCAAGATTGGTGGGTGGTTCCTGTGAAAGTTGCCTTTGATCAAACAGTCTGGTCAGCTATATGGAACAGTATTTACTTCACGGTTCTTGGTTTCCTGCGTTTCGAATCGCCTATCAGCATCTTCAAAGAACTAAAAGCTACGTTCTTGCCTATGCTAACAGTTGGAAGCTTTGGCCATTTGCTCATTTGA

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

5.61

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 127
AccI GTMKAC 1 cut(s) 576
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 904
AcsI RAATTY 1 cut(s) 87
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 4 cut(s) 27, 629, 734, 856
AhlI ACTAGT 1 cut(s) 661
AluBI AGCT 9 cut(s) 42, 283, 323, 407, 599, 721, 788, 869, 900
AluI AGCT 9 cut(s) 42, 283, 323, 407, 599, 721, 788, 869, 900
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 127
Aor51HI AGCGCT 1 cut(s) 528
AoxI GGCC 1 cut(s) 904
ApeKI GCWGC 4 cut(s) 5, 8, 263, 407
ApoI RAATTY 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 2 cut(s) 128, 529
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 24, 68
AsuII TTCGAA 1 cut(s) 834
AvaII GGWCC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 250, 394
BccI CCATC 4 cut(s) 70, 224, 449, 459
BceAI ACGGC 1 cut(s) 237
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 212
BcuI ACTAGT 1 cut(s) 661
BfaI CTAG 2 cut(s) 548, 662
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 530
BisI GCNGC 4 cut(s) 6, 9, 264, 408
BlsI GCNGC 4 cut(s) 7, 10, 265, 409
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 1 cut(s) 542
BmsI GCATC 1 cut(s) 858
Bpu14I TTCGAA 1 cut(s) 834
BpuMI CCSGG 1 cut(s) 542
Bsa29I ATCGAT 2 cut(s) 375, 444
BsaAI YACGTR 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 679
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 512, 706
BseCI ATCGAT 2 cut(s) 375, 444
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 3 cut(s) 86, 207, 614
BseNI ACTGG 2 cut(s) 512, 706
BseRI GAGGAG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 250, 394
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 1 cut(s) 906
BshVI ATCGAT 2 cut(s) 375, 444
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 158, 542
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
BsnI GGCC 1 cut(s) 906
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
Bsp19I CCATGG 1 cut(s) 679
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 906
BspCNI CTCAG 3 cut(s) 87, 208, 613
BspDI ATCGAT 2 cut(s) 375, 444
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 750
BspPI GGATC 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 711
BspT104I TTCGAA 1 cut(s) 834
BsrI ACTGG 2 cut(s) 512, 706
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
BssT1I CCWWGG 1 cut(s) 679
Bst4CI ACNGT 6 cut(s) 80, 621, 778, 800, 814, 892
Bst6I CTCTTC 2 cut(s) 340, 711
BstBAI YACGTR 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 834
BstDEI CTNAG 4 cut(s) 95, 216, 485, 600
BstDSI CCRYGG 1 cut(s) 679
BstF5I GGATG 1 cut(s) 470
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 2 cut(s) 128, 529
BstKTI GATC 7 cut(s) 135, 175, 375, 379, 448, 656, 772
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 250, 394
Bsu15I ATCGAT 2 cut(s) 375, 444
BsuRI GGCC 1 cut(s) 906
BsuTUI ATCGAT 2 cut(s) 375, 444
BtgI CCRYGG 1 cut(s) 679
BtsCI GGATG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 213, 608
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 128, 529
Cfr13I GGNCC 1 cut(s) 177
ClaI ATCGAT 2 cut(s) 375, 444
CpoI CGGWCCG 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 722, 757
CspI CGGWCCG 1 cut(s) 177
CviAII CATG 4 cut(s) 185, 449, 461, 680
DdeI CTNAG 4 cut(s) 95, 216, 485, 600
DpnI GATC 7 cut(s) 134, 174, 374, 378, 447, 655, 771
DpnII GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
EaeI YGGCCR 1 cut(s) 904
Eam1104I CTCTTC 2 cut(s) 340, 711
EarI CTCTTC 2 cut(s) 340, 711
Eco130I CCWWGG 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 679
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 4 cut(s) 188, 452, 464, 683
FaiI YATR 9 cut(s) 186, 450, 462, 492, 504, 681, 791, 793, 884
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 4 cut(s) 184, 448, 460, 679
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 4 cut(s) 6, 9, 264, 408
FokI GGATG 1 cut(s) 477
Fsp4HI GCNGC 4 cut(s) 6, 9, 264, 408
FspAI RTGCGCAY 1 cut(s) 127
FspBI CTAG 2 cut(s) 548, 662
FspI TGCGCA 1 cut(s) 127
GlaI GCGC 2 cut(s) 127, 528
GluI GCNGC 4 cut(s) 6, 9, 264, 408
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 1 cut(s) 906
HapII CCGG 2 cut(s) 158, 542
HhaI GCGC 2 cut(s) 128, 529
Hin1II CATG 4 cut(s) 188, 452, 464, 683
Hin6I GCGC 2 cut(s) 126, 527
HinP1I GCGC 2 cut(s) 126, 527
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 4 cut(s) 154, 239, 469, 836
HpaII CCGG 2 cut(s) 158, 542
HphI GGTGA 2 cut(s) 24, 68
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 2 cut(s) 165, 177
Hpy188III TCNNGA 4 cut(s) 318, 449, 657, 734
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 6 cut(s) 56, 185, 269, 287, 312, 605
HpyCH4III ACNGT 6 cut(s) 80, 621, 778, 800, 814, 892
HpyCH4IV ACGT 2 cut(s) 37, 872
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 4 cut(s) 95, 216, 485, 600
HpySE526I ACGT 2 cut(s) 37, 872
Hsp92II CATG 4 cut(s) 188, 452, 464, 683
HspAI GCGC 2 cut(s) 126, 527
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 2 cut(s) 320, 499
Lsp1109I GCAGC 2 cut(s) 250, 394
LweI GCATC 1 cut(s) 858
MaeI CTAG 2 cut(s) 548, 662
MaeII ACGT 2 cut(s) 37, 872
MaeIII GTNAC 2 cut(s) 137, 605
MalI GATC 7 cut(s) 134, 174, 374, 378, 447, 655, 771
MboI GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
MhlI GDGCHC 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 906
MluCI AATT 4 cut(s) 87, 112, 431, 630
MluNI TGGCCA 1 cut(s) 906
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 1 cut(s) 874
MnlI CCTC 5 cut(s) 60, 84, 102, 181, 507
Mox20I TGGCCA 1 cut(s) 906
MroXI GAANNNNTTC 1 cut(s) 297
MscI TGGCCA 1 cut(s) 906
MseI TTAA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 906
MspI CCGG 2 cut(s) 158, 542
MspR9I CCNGG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 123
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 1 cut(s) 679
NdeII GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
NlaIII CATG 4 cut(s) 188, 452, 464, 683
NlaIV GGNNCC 1 cut(s) 750
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 137
NsbI TGCGCA 1 cut(s) 127
NspV TTCGAA 1 cut(s) 834
PagI TCATGA 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 154, 239, 836
PkrI GCNGC 4 cut(s) 7, 10, 265, 409
Ple19I CGATCG 1 cut(s) 379
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 1 cut(s) 177
PsrI GAACNNNNNNTAC 2 cut(s) 788, 820
PvuI CGATCG 1 cut(s) 379
Rsr2I CGGWCCG 1 cut(s) 177
RsrII CGGWCCG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 6, 9, 264, 408
Sau3AI GATC 7 cut(s) 132, 172, 372, 376, 445, 653, 769
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 215
SfaNI GCATC 1 cut(s) 858
SfcI CTRYAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 834
SinI GGWCC 1 cut(s) 177
SpeI ACTAGT 1 cut(s) 661
Sse9I AATT 4 cut(s) 87, 112, 431, 630
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 548, 662
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 6 cut(s) 80, 621, 778, 800, 814, 892
TaiI ACGT 2 cut(s) 40, 875
TaqI TCGA 5 cut(s) 147, 375, 379, 444, 834
TaqII GACCGA 1 cut(s) 194
TasI AATT 4 cut(s) 87, 112, 431, 630
TfiI GAWTC 3 cut(s) 154, 239, 836
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 2 cut(s) 220, 608
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 5, 8, 263, 407
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 252, 351
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 220, 608
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 87
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 548, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.