Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012834

Physical Location & Seq

Genomic Coordinates Forward (+)

18224214 .. 18228021

Gene Structure 3808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCCGCCATACACTCCATAGCTGCTCAGAGCTTCCCCTCTCTCCCAAACGCCAAACCCAGAAAACCCATTGCCGCTCACGTAAAACCCATCTTGACCTCCGGTTTTCCCACCTCCAAACTCCCAAAAAACCCAACTTTCACGATAAACAAACAGAAAAGCAGGTGGGTTTTGAATTCGGTGGTCGACCGAGAAGAGTGCGATGTGATTCCGGTTCAGAGCTCCGACCGTACGGACCAGCAGGAAGGGGTGGTGGCGAGCAGGGTGGAGAGCGAAGGCGGGGATCAGGGGGAGTTGGTGAGTCAGGTGGGCGGGTTCGGAGCGAGTGAGGGGAGGCTTTCGTTTGAAGGGGCTGGAGGGTTTGGGTCTTCTGGGGTTGGAAGTGAGAGGGAGAGTGAGAAATTTGAGAGGCTGGTGGATAGGACTATCAATGCCGCTATTGTGCTTGCAGCTGGTTCTTTTGCTCTCACTAAGTTGATCACCGTCGACCAGGATTACTGGCATGGCTGGACTCTATATGAGATCCTCAGATATGCACCTCAACACAACTGGAGTGCTTATGAGGACGCTCTCAAGACTAACCCAGTTTTAGCCAAAATGGTGATTAGTGGTGTGGTGTACTCTGTAGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTCTATTTGAGTTTGACCGTACACGAATGCTCAGGTCAGGTCTTGTTGGATTTACTCTCCATGGTTCCCTCTCTCACTACTATTACCAGTTTTGCGAGGAGCTTATTCCCTTCCAAGACTGGTGGGTGGTTCCTGCCAAAGTAGCCTTCGACCAAACTGTATGGGCAGCAATTTGGAACAGCATTTACTTTACAGTAGTGGGATTTTTGCGTTTTGAATCTCCCATCAGTATTTTTAGTGAACTGACAGCGACATTTTGGCCAATGCTAACAGCAGGGTGGAAGCTTTGGCCATTTGCGCATCTTGTTACCTATGGTGTGATCCCTGTTGAACAACGGCTCTTATGGGTGGACTGTGTAGAGTTAGTCTGGGTGACTATACTCTCAACTTACTCAAATGAAAAATCAGAAGCAAGGATTTCTGAGGCACCAGCTGAAGATATTTCCAGTTCGTCGAACACAAGTCCTCTTGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

380

Amino Acids

42.24

Weight (kDa)

5.16

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52870 AT1G52870
fragaria_vesca	FvH4_3g20720
malus_domestica	MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica	Prupe.4G187300_v2.0.a1
pyrus_communis	pycom03g17100 pycom11g21150
rosa_chinensis	RchiOBHm_Chr5g0034871
rosa_laevigata	RLG00000033582
rosa_multiflora	Rmu_sc0002460.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045460
rosa_rugosa	Rorug05G0148900
rosa_samantha	Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana	Rw5G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	153
Acc16I	TGCGCA	1 cut(s)	960
Acc36I	ACCTGC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	1087
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	186, 486
AciI	CCGC	5 cut(s)	6, 75, 279, 312, 435
AclWI	GGATC	3 cut(s)	291, 517, 976
AcoI	YGGCCR	3 cut(s)	3, 920, 950
AcsI	RAATTY	2 cut(s)	175, 401
AcuI	CTGAAG	1 cut(s)	1116
AfaI	GTAC	3 cut(s)	232, 620, 682
AgsI	TTSAA	5 cut(s)	175, 347, 653, 878, 992
AjnI	CCWGG	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	7 cut(s)	23, 33, 222, 452, 763, 946, 1094
AluI	AGCT	7 cut(s)	23, 33, 222, 452, 763, 946, 1094
Alw21I	GWGCWC	1 cut(s)	224
AlwI	GGATC	3 cut(s)	291, 517, 976
AoxI	GGCC	3 cut(s)	3, 920, 950
ApeKI	GCWGC	3 cut(s)	23, 449, 827
ApoI	RAATTY	2 cut(s)	175, 401
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	4 cut(s)	310, 472, 613, 1045
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	2 cut(s)	922, 952
BanI	GGYRCC	1 cut(s)	1087
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	10, 461, 839
BccI	CCATC	2 cut(s)	98, 893
BceAI	ACGGC	1 cut(s)	1013
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	491
BclI	TGATCA	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	6 cut(s)	6, 24, 75, 435, 450, 828
BlsI	GCNGC	6 cut(s)	7, 25, 76, 436, 451, 829
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	3 cut(s)	727, 792, 1089
BmrFI	CCNGG	1 cut(s)	491
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	970
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	375, 571
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	721
BsaWI	WCCGGW	2 cut(s)	101, 211
Bse1I	ACTGG	7 cut(s)	503, 554, 584, 638, 748, 785, 1107
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	721
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	4 cut(s)	41, 541, 706, 1074
BseNI	ACTGG	7 cut(s)	503, 554, 584, 638, 748, 785, 1107
BseRI	GAGGAG	1 cut(s)	773
BseXI	GCAGC	3 cut(s)	10, 461, 839
Bsh1285I	CGRYCG	2 cut(s)	190, 229
BshFI	GGCC	3 cut(s)	5, 922, 952
BshNI	GGYRCC	1 cut(s)	1087
BsiEI	CGRYCG	2 cut(s)	190, 229
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	102, 212
BsiWI	CGTACG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	3 cut(s)	5, 922, 952
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	283, 477, 522, 981
Bsp19I	CCATGG	1 cut(s)	721
BspACI	CCGC	5 cut(s)	6, 75, 279, 312, 435
BspANI	GGCC	3 cut(s)	5, 922, 952
BspCNI	CTCAG	4 cut(s)	40, 540, 705, 1075
BspLI	GGNNCC	3 cut(s)	727, 792, 1089
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	3 cut(s)	291, 517, 976
BspT107I	GGYRCC	1 cut(s)	1087
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	7 cut(s)	503, 554, 584, 638, 748, 785, 1107
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	4 cut(s)	283, 477, 522, 981
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	7 cut(s)	230, 484, 645, 680, 820, 856, 1016
Bst6I	CTCTTC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	259, 447
BstDEI	CTNAG	5 cut(s)	27, 471, 527, 692, 1083
BstDSI	CCRYGG	1 cut(s)	721
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	4 cut(s)	286, 480, 525, 984
BstMBI	GATC	4 cut(s)	283, 477, 522, 981
BstMCI	CGRYCG	2 cut(s)	190, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 958
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	10, 461, 839
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	5, 922, 952
BtgI	CCRYGG	1 cut(s)	721
BtgZI	GCGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	650
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	259, 447
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	231, 619, 681
CspCI	CAANNNNNGTGG	2 cut(s)	764, 799
CviAII	CATG	2 cut(s)	503, 722
CviQI	GTAC	3 cut(s)	231, 619, 681
DdeI	CTNAG	5 cut(s)	27, 471, 527, 692, 1083
DpnI	GATC	4 cut(s)	285, 479, 524, 983
DpnII	GATC	4 cut(s)	283, 477, 522, 981
EaeI	YGGCCR	3 cut(s)	3, 920, 950
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	721
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	1116
EcoICRI	GAGCTC	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	2 cut(s)	506, 725
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	2 cut(s)	502, 721
FauI	CCCGC	2 cut(s)	272, 305
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	2 cut(s)	186, 486
Fnu4HI	GCNGC	6 cut(s)	6, 24, 75, 435, 450, 828
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	6 cut(s)	6, 24, 75, 435, 450, 828
FspI	TGCGCA	1 cut(s)	960
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	6 cut(s)	6, 24, 75, 435, 450, 828
GsuI	CTGGAG	2 cut(s)	375, 571
HaeIII	GGCC	3 cut(s)	5, 922, 952
HapII	CCGG	2 cut(s)	102, 212
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	2 cut(s)	506, 725
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HincII	GTYRAC	2 cut(s)	187, 487
HindII	GTYRAC	2 cut(s)	187, 487
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	4 cut(s)	208, 301, 511, 878
HpaII	CCGG	2 cut(s)	102, 212
HphI	GGTGA	4 cut(s)	310, 472, 613, 1045
Hpy166II	GTNNAC	6 cut(s)	187, 487, 619, 683, 902, 1012
Hpy188I	TCNGA	7 cut(s)	30, 219, 226, 320, 530, 1069, 1084
Hpy188III	TCNNGA	4 cut(s)	94, 142, 574, 1130
Hpy8I	GTNNAC	6 cut(s)	187, 487, 619, 683, 902, 1012
Hpy99I	CGWCG	2 cut(s)	488, 1117
HpyAV	CCTTC	6 cut(s)	239, 269, 341, 647, 781, 817
HpyCH4III	ACNGT	7 cut(s)	230, 484, 645, 680, 820, 856, 1016
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	449, 536, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 958
HpyF3I	CTNAG	5 cut(s)	27, 471, 527, 692, 1083
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	506, 725
HspAI	GCGC	1 cut(s)	959
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	283, 477, 522, 981
LmnI	GCTCC	3 cut(s)	227, 320, 760
Lsp1109I	GCAGC	3 cut(s)	10, 461, 839
LweI	GCATC	1 cut(s)	970
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	967, 1033
MalI	GATC	4 cut(s)	285, 479, 524, 983
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	4 cut(s)	283, 477, 522, 981
MboII	GAAGA	3 cut(s)	206, 360, 1109
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	2 cut(s)	922, 952
MluCI	AATT	3 cut(s)	175, 401, 831
MluNI	TGGCCA	2 cut(s)	922, 952
MlyI	GAGTC	2 cut(s)	310, 505
MmeI	TCCRAC	3 cut(s)	249, 358, 688
Mox20I	TGGCCA	2 cut(s)	922, 952
MscI	TGGCCA	2 cut(s)	922, 952
Msp20I	TGGCCA	2 cut(s)	922, 952
MspA1I	CMGCKG	2 cut(s)	452, 1094
MspI	CCGG	2 cut(s)	102, 212
MspR9I	CCNGG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	803, 958
NcoI	CCATGG	1 cut(s)	721
NdeII	GATC	4 cut(s)	283, 477, 522, 981
NlaIII	CATG	2 cut(s)	506, 725
NlaIV	GGNNCC	3 cut(s)	727, 792, 1089
NmuCI	GTSAC	1 cut(s)	1033
NsbI	TGCGCA	1 cut(s)	960
PaqCI	CACCTGC	1 cut(s)	153
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	208, 878
Pfl23II	CGTACG	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	7, 25, 76, 436, 451, 829
PleI	GAGTC	2 cut(s)	309, 505
PpsI	GAGTC	2 cut(s)	309, 505
Ppu21I	YACGTR	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspLI	CGTACG	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	727, 792, 1089
PspPI	GGNCC	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	830, 862
PsuI	RGATCY	1 cut(s)	522
PvuII	CAGCTG	2 cut(s)	452, 1094
RsaI	GTAC	3 cut(s)	232, 620, 682
RsaNI	GTAC	3 cut(s)	231, 619, 681
SacI	GAGCTC	1 cut(s)	224
SalI	GTCGAC	2 cut(s)	185, 485
SatI	GCNGC	6 cut(s)	6, 24, 75, 435, 450, 828
Sau3AI	GATC	4 cut(s)	283, 477, 522, 981
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	310, 505
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	970
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	2 cut(s)	572, 1130
SmoI	CTYRAG	2 cut(s)	572, 1130
Sse9I	AATT	3 cut(s)	175, 401, 831
SsiI	CCGC	5 cut(s)	6, 75, 279, 312, 435
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	7 cut(s)	230, 484, 645, 680, 820, 856, 1016
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	186, 486, 810, 1115
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	175, 401, 831
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	3 cut(s)	8, 77, 437
TfiI	GAWTC	2 cut(s)	208, 878
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	3 cut(s)	23, 449, 827
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	1 cut(s)	1074
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	175, 401
XmiI	GTMKAC	2 cut(s)	186, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.