Rroxscaffold_1G00045460

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012834
Physical Location & Seq
Forward (+)
64448954 .. 64452842
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045460.1

Sequence Viewer

Length: 1137 bp
ATGGCGTCCATCCACGCCATAGCTCCCCAGAGCTTCCCAAACCTCCCAAAACCCAATCCCAGAAAACCCATTACTTCCCACCCAAAACCCACCTCAAGCTCCAATCTTTACACCCCCAAACTCCCAAAGACCCAGTCTTTCCCCTTAAACAATAGGAAACCCACTTGGGTCCTCAATTCCGTGGCCCAAAACCAAGAATGTGACGTCATCCCAGTTCAGAGCTCCGACTCTGTTGACCAGCAGGAAGGGATGGTGGTGAGCAGGGCAGAGTGTGAAGGTGTGGAGAGCGAGTTGGTGAGTCAGGTCGGTGGGTTTGGAGCGAGTGAGGGGAGGCTTTCGTTTGAAGGGGCTGGTGGGTTTGGGTCTTCTGGGGTTGGAAATGAGAGAGGGAATGAGGAATTTTACAGGCTTGTGGATAGGAGTATTAATGCCACCATTGTGCTTGCAGCTGGTACTTTTGCTATTACCAAGTTGCTCACTATTGATCAGGATTATTGGCATGGATGGACTATGTATGAGATTGTAAGATATGCACCTCAACACAACTGGACTGCTTATGAGGAAGCTCTCAAGGCTAATCCAGTGTTAGCCAAAATGGTAATTAGTGGTGTTGTATACTCTGTCGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTTTATTTGAGTTTGACCGGGCACGAATGTTCAGATCTGGACTTGTTGGTTTTACTCTCCATGGTTCCCTATCACACTACTATTACCAGTTTTGTGAGGAGCTTTTTCCTTTCCAAGGGTGGTGGGTGGTTCCTGTAAAAGTAGTCTTCGACCAAACTATTTGGGCAGCAATTTGGAACAGCATTTACTTTACAGTTTTGGGATTTTTGCGTCTTGAATCTCCTATCAATATTTATAGTGAACTGAAAGCAACATTCTGGCCCATGCTGACTGCAGGGTGGAAGCTTTGGCCATTTGCTCATCTTATTACCTATGGTGTGATCCCCGTTGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTAATTTGGGTGACTATACTCTCAACTTATTCCAATGAAAAGTCGGAAGCAAGGATTTCTGACGCACCAGCTGAAGCAAGTTCCAGCTCTTCTAACATAAATCCTGTTGAGGAGTAA

Protein Analysis

378

Amino Acids

42.39

Weight (kDa)

5.29

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 288 - 348 7.6e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 615
AclWI GGATC 1 cut(s) 973
AcoI YGGCCR 1 cut(s) 947
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 1113
AcyI GRCGYC 2 cut(s) 5, 204
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 773
AgsI TTSAA 4 cut(s) 344, 650, 875, 989
AleI CACNNNNGTG 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 1 cut(s) 973
AoxI GGCC 3 cut(s) 183, 917, 947
ApeKI GCWGC 2 cut(s) 446, 824
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AseI ATTAAT 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 169, 184, 918
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 3 cut(s) 268, 307, 1042
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 682
BalI TGGCCA 1 cut(s) 949
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 357, 796
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 458, 836
BccI CCATC 3 cut(s) 17, 244, 498
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 930
BglII AGATCT 1 cut(s) 692
BisI GCNGC 2 cut(s) 447, 825
BlsI GCNGC 2 cut(s) 448, 826
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 169, 184, 918
BmiI GGNNCC 3 cut(s) 170, 724, 789
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 2 cut(s) 127, 206
BmuI ACTGGG 2 cut(s) 127, 206
BpiI GAAGAC 2 cut(s) 357, 796
BpuEI CTTGAG 2 cut(s) 79, 554
BpuMI CCSGG 1 cut(s) 677
BsaHI GRCGYC 2 cut(s) 5, 204
BsaJI CCNNGG 3 cut(s) 180, 718, 772
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 773
Bse1I ACTGG 6 cut(s) 133, 212, 551, 581, 635, 745
BseDI CCNNGG 3 cut(s) 180, 718, 772
BseGI GGATG 4 cut(s) 9, 207, 255, 509
BseLI CCNNNNNNNGG 1 cut(s) 773
BseNI ACTGG 6 cut(s) 133, 212, 551, 581, 635, 745
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 2 cut(s) 458, 836
BshFI GGCC 3 cut(s) 185, 919, 949
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 676
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 3 cut(s) 185, 919, 949
Bsp1286I GDGCHC 2 cut(s) 224, 682
Bsp143I GATC 3 cut(s) 484, 692, 978
Bsp19I CCATGG 1 cut(s) 718
BspANI GGCC 3 cut(s) 185, 919, 949
BspLI GGNNCC 3 cut(s) 170, 724, 789
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 1 cut(s) 973
BspQI GCTCTTC 1 cut(s) 1114
BsrI ACTGG 6 cut(s) 133, 212, 551, 581, 635, 745
BssECI CCNNGG 3 cut(s) 180, 718, 772
BssMI GATC 3 cut(s) 484, 692, 978
BssNAI GTATAC 1 cut(s) 616
BssNI GRCGYC 2 cut(s) 5, 204
BssT1I CCWWGG 2 cut(s) 718, 772
Bst1107I GTATAC 1 cut(s) 616
Bst4CI ACNGT 3 cut(s) 642, 853, 1013
Bst6I CTCTTC 1 cut(s) 1114
BstACI GRCGYC 2 cut(s) 5, 204
BstC8I GCNNGC 1 cut(s) 444
BstDSI CCRYGG 2 cut(s) 180, 718
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 4 cut(s) 9, 207, 255, 509
BstKTI GATC 3 cut(s) 487, 695, 981
BstMBI GATC 3 cut(s) 484, 692, 978
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 458, 836
BstV2I GAAGAC 2 cut(s) 357, 796
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BstZ17I GTATAC 1 cut(s) 616
BsuRI GGCC 3 cut(s) 185, 919, 949
BtgI CCRYGG 2 cut(s) 180, 718
BtsCI GGATG 4 cut(s) 9, 207, 255, 509
BtsIMutI CAGTG 2 cut(s) 588, 647
Cac8I GCNNGC 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 169, 184, 918
CseI GACGC 2 cut(s) 857, 1091
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 761, 796
CviAII CATG 3 cut(s) 500, 719, 922
CviQI GTAC 1 cut(s) 453
DpnI GATC 3 cut(s) 486, 694, 980
DpnII GATC 3 cut(s) 484, 692, 978
EaeI YGGCCR 1 cut(s) 947
Eam1104I CTCTTC 1 cut(s) 1114
EarI CTCTTC 1 cut(s) 1114
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 718, 772
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 1113
EcoICRI GAGCTC 1 cut(s) 222
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 718, 772
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 2 cut(s) 718, 772
FaeI CATG 3 cut(s) 503, 722, 925
FaqI GGGAC 1 cut(s) 641
FatI CATG 3 cut(s) 499, 718, 921
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 447, 825
FokI GGATG 3 cut(s) 194, 262, 516
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 447, 825
GluI GCNGC 2 cut(s) 447, 825
HaeIII GGCC 3 cut(s) 185, 919, 949
HapII CCGG 1 cut(s) 676
HgaI GACGC 2 cut(s) 857, 1091
Hin1I GRCGYC 2 cut(s) 5, 204
Hin1II CATG 3 cut(s) 503, 722, 925
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 941
HinfI GANTC 3 cut(s) 227, 298, 875
HpaII CCGG 1 cut(s) 676
HphI GGTGA 3 cut(s) 268, 307, 1042
Hpy166II GTNNAC 4 cut(s) 235, 616, 899, 1009
Hpy188I TCNGA 5 cut(s) 219, 226, 692, 1066, 1081
Hpy188III TCNNGA 3 cut(s) 488, 696, 872
Hpy8I GTNNAC 4 cut(s) 235, 616, 899, 1009
HpyAV CCTTC 4 cut(s) 239, 269, 338, 644
HpyCH4III ACNGT 3 cut(s) 642, 853, 1013
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 446, 533, 638, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 2 cut(s) 5, 204
Hsp92II CATG 3 cut(s) 503, 722, 925
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 3 cut(s) 484, 692, 978
LguI GCTCTTC 1 cut(s) 1114
LmnI GCTCC 5 cut(s) 28, 104, 227, 317, 757
Lsp1109I GCAGC 2 cut(s) 458, 836
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 200, 1030
MalI GATC 3 cut(s) 486, 694, 980
MboI GATC 3 cut(s) 484, 692, 978
MboII GAAGA 3 cut(s) 357, 796, 1101
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 2 cut(s) 224, 682
MlsI TGGCCA 1 cut(s) 949
MluCI AATT 5 cut(s) 175, 398, 600, 828, 1023
MluNI TGGCCA 1 cut(s) 949
MlyI GAGTC 2 cut(s) 221, 307
MmeI TCCRAC 3 cut(s) 249, 355, 1044
Mox20I TGGCCA 1 cut(s) 949
MscI TGGCCA 1 cut(s) 949
MseI TTAA 3 cut(s) 146, 426, 1022
MslI CAYNNNNRTG 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 949
MspA1I CMGCKG 2 cut(s) 449, 1091
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 677
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 677
NcoI CCATGG 1 cut(s) 718
NdeII GATC 3 cut(s) 484, 692, 978
NlaIII CATG 3 cut(s) 503, 722, 925
NlaIV GGNNCC 3 cut(s) 170, 724, 789
NmuCI GTSAC 2 cut(s) 200, 1030
OliI CACNNNNGTG 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 1114
PfeI GAWTC 1 cut(s) 875
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 448, 826
PleI GAGTC 2 cut(s) 221, 306
PpsI GAGTC 2 cut(s) 221, 306
PpuMI RGGWCCY 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 170, 724, 789
PspPI GGNCC 3 cut(s) 169, 184, 918
PspPPI RGGWCCY 1 cut(s) 169
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 2 cut(s) 449, 1091
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 1114
SaqAI TTAA 3 cut(s) 146, 426, 1022
SatI GCNGC 2 cut(s) 447, 825
Sau3AI GATC 3 cut(s) 484, 692, 978
Sau96I GGNCC 3 cut(s) 169, 184, 918
SchI GAGTC 2 cut(s) 221, 307
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 2 cut(s) 224, 682
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 94, 569
SmoI CTYRAG 2 cut(s) 94, 569
Sse9I AATT 5 cut(s) 175, 398, 600, 828, 1023
SspI AATATT 1 cut(s) 889
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 2 cut(s) 718, 772
TaaI ACNGT 3 cut(s) 642, 853, 1013
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 807
TasI AATT 5 cut(s) 175, 398, 600, 828, 1023
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 3 cut(s) 146, 426, 1022
Tru9I TTAA 3 cut(s) 146, 426, 1022
TscAI CASTG 2 cut(s) 588, 647
TseFI GTSAC 2 cut(s) 200, 1030
TseI GCWGC 2 cut(s) 446, 824
Tsp45I GTSAC 2 cut(s) 200, 1030
TspDTI ATGAA 1 cut(s) 1071
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 2 cut(s) 588, 647
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 169
VspI ATTAAT 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 771
XapI RAATTY 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 615
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.