Rh5CG272400

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012834
Physical Location & Seq
Reverse (-)
29364962 .. 29369134
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG272400.1

Sequence Viewer

Length: 828 bp
ATGGCGTCCATCCACGCCATAGCTCCCCAGAGCTTCCCAAACGTCCCAAAACCCAATCCCAGAAAACCCATTACTTCCCACCCAAAACCCACCTCAAGCTCCAATCTTTACACCCCCAAACTCCCAAAGACCCAATCTTTCCCCTTAAACAATAGGAAACCCACTTGGGTCCTCAACTCGGTGGCCCAACACCAAGAATGTGACGTCATCCCAGTTCAGAGCTCTGACTGTGTTGACCAGCAGGAAGGGATGGTGGTGAGCAGGGTAGAGTGTGAAGGTGTGGAGAGCGAGTTGGTGAGTCAGGTCGGTGGGTTTGCAGCGAGTGAGGGAAGGCTTTCGTTTGAAGGGGCTGGTGGGTTTGGGTCTTCTGGGGTTGGAAATGAGAGAGGGAATGAGGAATTTTACAGGCTTGTGGATAGGAGTATTAATGCCACCATTGTGCTTGCAGCTGGTACTTTTGCTATTACCAAGTTGCTCACTATTGATCAGGATTATTGGCATGGATGGACTATATATGAGATTGTAAGATATGCACCTCAACACAACTGGACTGCTTATGAGGAAGCTCTCAAGGCTAATCCAGTGTTAGCCAAAATGGTAATTAGTGGTGTTGTATACTCTGTCGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTTTATTTGAGTTTGACCGGGCACGAATGTTCAGATCTGGACTTGTTGGTTTTACTCTCCATGGTTCCCTATCACACTACTATTACCAGTTTTGTGAGGTTAATTTTTTCTTCTCTTGTTTATGTCAGAACATTTTTTTTATAATTCTTTTTATTTCTATGGTTCCTTAA

Protein Analysis

275

Amino Acids

30.67

Weight (kDa)

5.98

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AatII GACGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 615
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 2 cut(s) 5, 204
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 2 cut(s) 344, 650
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 6 cut(s) 23, 33, 99, 222, 449, 566
AluI AGCT 6 cut(s) 23, 33, 99, 222, 449, 566
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 317, 446
ApoI RAATTY 1 cut(s) 398
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 169, 184
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 268, 307
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 329, 458
BccI CCATC 3 cut(s) 17, 244, 498
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 677
BglII AGATCT 1 cut(s) 692
BisI GCNGC 2 cut(s) 318, 447
BlsI GCNGC 2 cut(s) 319, 448
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 169, 184
BmiI GGNNCC 3 cut(s) 170, 724, 822
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 79, 554
BpuMI CCSGG 1 cut(s) 677
BsaHI GRCGYC 2 cut(s) 5, 204
BsaJI CCNNGG 1 cut(s) 718
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 5 cut(s) 212, 551, 581, 635, 745
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 4 cut(s) 9, 207, 255, 509
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 5 cut(s) 212, 551, 581, 635, 745
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 2 cut(s) 329, 458
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 676
BslFI GGGAC 2 cut(s) 29, 641
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 29, 641
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 224, 682
Bsp143I GATC 2 cut(s) 484, 692
Bsp19I CCATGG 1 cut(s) 718
BspANI GGCC 1 cut(s) 185
BspLI GGNNCC 3 cut(s) 170, 724, 822
BsrI ACTGG 5 cut(s) 212, 551, 581, 635, 745
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 2 cut(s) 484, 692
BssNAI GTATAC 1 cut(s) 616
BssNI GRCGYC 2 cut(s) 5, 204
BssT1I CCWWGG 1 cut(s) 718
Bst1107I GTATAC 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 230, 642
BstACI GRCGYC 2 cut(s) 5, 204
BstC8I GCNNGC 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 718
BstF5I GGATG 4 cut(s) 9, 207, 255, 509
BstKTI GATC 2 cut(s) 487, 695
BstMBI GATC 2 cut(s) 484, 692
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 329, 458
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BstZ17I GTATAC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 718
BtsCI GGATG 4 cut(s) 9, 207, 255, 509
BtsIMutI CAGTG 2 cut(s) 588, 647
Cac8I GCNNGC 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 169, 184
Csp6I GTAC 1 cut(s) 453
CviAII CATG 2 cut(s) 500, 719
CviQI GTAC 1 cut(s) 453
DpnI GATC 2 cut(s) 486, 694
DpnII GATC 2 cut(s) 484, 692
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 2 cut(s) 503, 722
FaqI GGGAC 2 cut(s) 29, 641
FatI CATG 2 cut(s) 499, 718
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 318, 447
FokI GGATG 3 cut(s) 194, 262, 516
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 318, 447
GluI GCNGC 2 cut(s) 318, 447
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 676
Hin1I GRCGYC 2 cut(s) 5, 204
Hin1II CATG 2 cut(s) 503, 722
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 676
HphI GGTGA 2 cut(s) 268, 307
Hpy166II GTNNAC 2 cut(s) 235, 616
Hpy188I TCNGA 4 cut(s) 219, 226, 692, 786
Hpy188III TCNNGA 2 cut(s) 488, 696
Hpy8I GTNNAC 2 cut(s) 235, 616
HpyAV CCTTC 5 cut(s) 239, 269, 324, 338, 644
HpyCH4III ACNGT 2 cut(s) 230, 642
HpyCH4IV ACGT 2 cut(s) 42, 204
HpyCH4V TGCA 4 cut(s) 317, 446, 533, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpySE526I ACGT 2 cut(s) 42, 204
Hsp92I GRCGYC 2 cut(s) 5, 204
Hsp92II CATG 2 cut(s) 503, 722
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 484, 692
LmnI GCTCC 2 cut(s) 28, 104
Lsp1109I GCAGC 2 cut(s) 329, 458
MaeII ACGT 2 cut(s) 42, 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 486, 694
MboI GATC 2 cut(s) 484, 692
MboII GAAGA 2 cut(s) 357, 760
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 2 cut(s) 224, 682
MluCI AATT 4 cut(s) 398, 600, 760, 801
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 8 cut(s) 103, 182, 319, 380, 388, 546, 553, 748
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 4 cut(s) 146, 426, 759, 826
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 677
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 677
NcoI CCATGG 1 cut(s) 718
NdeII GATC 2 cut(s) 484, 692
NlaIII CATG 2 cut(s) 503, 722
NlaIV GGNNCC 3 cut(s) 170, 724, 822
NmuCI GTSAC 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 334
PkrI GCNGC 2 cut(s) 319, 448
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 426
PsiI TTATAA 1 cut(s) 800
Psp124BI GAGCTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 170, 724, 822
PspPI GGNCC 2 cut(s) 169, 184
PspPPI RGGWCCY 1 cut(s) 169
PsuI RGATCY 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 224
SaqAI TTAA 4 cut(s) 146, 426, 759, 826
SatI GCNGC 2 cut(s) 318, 447
Sau3AI GATC 2 cut(s) 484, 692
Sau96I GGNCC 2 cut(s) 169, 184
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 2 cut(s) 224, 682
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 94, 569
SmoI CTYRAG 2 cut(s) 94, 569
Sse9I AATT 4 cut(s) 398, 600, 760, 801
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 2 cut(s) 230, 642
TaiI ACGT 2 cut(s) 45, 207
TasI AATT 4 cut(s) 398, 600, 760, 801
Tru1I TTAA 4 cut(s) 146, 426, 759, 826
Tru9I TTAA 4 cut(s) 146, 426, 759, 826
TscAI CASTG 2 cut(s) 588, 647
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 317, 446
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 2 cut(s) 588, 647
VpaK11BI GGWCC 1 cut(s) 169
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 334
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.